Wall clock time and date at job start Tue Mar 31 2020 16:14:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53006 * 109.47035 * 2 1 4 4 C 1.53003 * 109.47217 * 120.00130 * 2 1 3 5 5 C 1.50700 * 109.46831 * 65.00248 * 4 2 1 6 6 O 1.21276 * 120.00163 * 359.97438 * 5 4 2 7 7 N 1.34780 * 119.99663 * 180.02562 * 5 4 2 8 8 C 1.46921 * 120.63095 * 359.97438 * 7 5 4 9 9 C 1.53190 * 108.77400 * 233.61227 * 8 7 5 10 10 C 1.53038 * 109.31482 * 305.36195 * 9 8 7 11 11 C 1.53045 * 109.53600 * 61.36520 * 10 9 8 12 12 H 1.09001 * 109.49329 * 58.61877 * 11 10 9 13 13 N 1.46496 * 109.50086 * 178.68194 * 11 10 9 14 14 C 1.34777 * 120.00266 * 275.00599 * 13 11 10 15 15 O 1.21274 * 120.00135 * 0.27234 * 14 13 11 16 16 C 1.50706 * 119.99766 * 179.97438 * 14 13 11 17 17 S 1.81003 * 109.46851 * 179.97438 * 16 14 13 18 18 C 1.76196 * 99.99843 * 180.02562 * 17 16 14 19 19 H 1.07998 * 120.00031 * 359.97438 * 18 17 16 20 20 C 1.38802 * 119.99637 * 180.02562 * 18 17 16 21 21 N 1.31628 * 120.00514 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 119.99567 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.46941 * 90.00284 * 22 20 18 24 24 H 1.48505 * 109.46872 * 209.99797 * 22 20 18 25 25 H 1.48493 * 109.47194 * 329.99916 * 22 20 18 26 26 C 1.46930 * 120.62746 * 180.02562 * 7 5 4 27 27 H 1.09004 * 109.46674 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46741 * 299.99630 * 1 2 3 29 29 H 1.08993 * 109.47249 * 59.99594 * 1 2 3 30 30 H 1.08998 * 109.46741 * 240.00370 * 2 1 3 31 31 H 1.08998 * 109.46839 * 179.97438 * 3 2 1 32 32 H 1.08993 * 109.47433 * 300.00292 * 3 2 1 33 33 H 1.09002 * 109.46397 * 60.00247 * 3 2 1 34 34 H 1.09000 * 109.47148 * 305.00221 * 4 2 1 35 35 H 1.08999 * 109.46933 * 185.00221 * 4 2 1 36 36 H 1.08993 * 109.58752 * 113.82538 * 8 7 5 37 37 H 1.09004 * 109.70778 * 353.46430 * 8 7 5 38 38 H 1.09005 * 109.50042 * 185.41109 * 9 8 7 39 39 H 1.09002 * 109.52814 * 65.33026 * 9 8 7 40 40 H 1.08998 * 109.46079 * 301.34982 * 10 9 8 41 41 H 1.09002 * 109.46540 * 181.38136 * 10 9 8 42 42 H 0.96999 * 119.99691 * 94.99585 * 13 11 10 43 43 H 1.09000 * 109.47161 * 299.99737 * 16 14 13 44 44 H 1.09001 * 109.46740 * 59.99879 * 16 14 13 45 45 H 0.96995 * 120.00407 * 179.97438 * 21 20 18 46 46 H 1.08997 * 109.58890 * 6.59562 * 26 7 5 47 47 H 1.09000 * 109.58077 * 246.17489 * 26 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.6414 -2.1733 1.1888 6 8 1.0111 -2.5901 0.2402 7 7 1.9846 -3.0086 2.1894 8 6 2.7476 -2.5183 3.3452 9 6 3.9914 -3.3948 3.5227 10 6 3.5665 -4.8614 3.6264 11 6 2.8593 -5.2818 2.3358 12 1 3.5306 -5.1369 1.4894 13 7 2.4808 -6.6943 2.4235 14 6 3.3704 -7.6520 2.0951 15 8 4.4859 -7.3447 1.7317 16 6 2.9812 -9.1051 2.1858 17 16 4.3802 -10.1371 1.6819 18 6 3.6669 -11.7363 1.8776 19 1 2.6476 -11.8346 2.2206 20 6 4.4154 -12.8697 1.5918 21 7 5.6583 -12.7499 1.1752 22 14 3.6594 -14.5652 1.8000 23 1 3.0100 -14.9769 0.5296 24 1 4.7220 -15.5412 2.1516 25 1 2.6454 -14.5253 2.8840 26 6 1.6037 -4.4269 2.1444 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9564 -0.8899 33 1 1.6767 1.9563 0.8901 34 1 1.6054 -0.2618 2.1370 35 1 3.1264 -0.6443 1.2951 36 1 2.1299 -2.5748 4.2414 37 1 3.0502 -1.4851 3.1745 38 1 4.5156 -3.1028 4.4327 39 1 4.6523 -3.2674 2.6653 40 1 2.8864 -4.9837 4.4694 41 1 4.4476 -5.4851 3.7773 42 1 1.5900 -6.9403 2.7180 43 1 2.7045 -9.3437 3.2127 44 1 2.1336 -9.2959 1.5274 45 1 6.1815 -13.5420 0.9758 46 1 1.1513 -4.6534 1.1789 47 1 0.8922 -4.6396 2.9424 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001070372558.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:14:26 Heat of formation + Delta-G solvation = -93.414940 kcal Electronic energy + Delta-G solvation = -25605.663038 eV Core-core repulsion = 21913.795921 eV Total energy + Delta-G solvation = -3691.867117 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.75232 -39.35738 -37.69348 -35.83049 -34.58740 -32.56875 -32.42993 -30.94194 -29.11045 -27.92593 -27.40702 -25.53004 -25.45718 -23.23791 -21.68343 -20.51063 -20.37825 -19.06470 -17.89868 -17.53283 -16.58134 -16.30888 -16.10536 -15.64802 -15.11787 -14.82234 -14.80383 -14.54730 -14.25310 -14.17345 -13.98516 -13.86574 -13.41391 -13.18150 -13.05041 -12.63051 -12.55021 -12.47545 -12.24767 -12.07060 -11.72075 -11.56614 -11.31592 -11.17087 -11.13240 -11.08265 -11.04116 -11.02588 -10.98025 -10.76455 -9.96612 -9.81888 -9.42420 -9.12028 -9.06119 -8.82317 -8.24213 -6.50343 -6.21839 -3.92443 2.32904 2.51689 3.05664 3.09183 3.22458 3.28396 3.33092 3.71672 4.12083 4.20247 4.36420 4.48425 4.53647 4.59779 4.60937 4.67627 4.87976 4.95618 5.07580 5.10476 5.13347 5.15400 5.19658 5.26324 5.29350 5.35729 5.40644 5.45319 5.56861 5.60851 5.64468 5.66569 5.74348 5.81883 5.88181 5.99415 6.02437 6.08027 6.09579 6.13734 6.16855 6.61148 7.05200 7.59434 7.66784 7.89213 8.35075 8.58575 9.23504 10.85573 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.028082 B = 0.002024 C = 0.001975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.851780 B =13829.015974 C =14170.268566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.083 4.083 3 C -0.148 4.148 4 C -0.135 4.135 5 C 0.515 3.485 6 O -0.533 6.533 7 N -0.611 5.611 8 C 0.105 3.895 9 C -0.133 4.133 10 C -0.132 4.132 11 C 0.135 3.865 12 H 0.091 0.909 13 N -0.734 5.734 14 C 0.535 3.465 15 O -0.515 6.515 16 C -0.153 4.153 17 S -0.060 6.060 18 C -0.536 4.536 19 H 0.073 0.927 20 C 0.073 3.927 21 N -0.868 5.868 22 Si 0.919 3.081 23 H -0.277 1.277 24 H -0.282 1.282 25 H -0.272 1.272 26 C 0.106 3.894 27 H 0.074 0.926 28 H 0.046 0.954 29 H 0.052 0.948 30 H 0.078 0.922 31 H 0.055 0.945 32 H 0.058 0.942 33 H 0.054 0.946 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.071 0.929 37 H 0.087 0.913 38 H 0.080 0.920 39 H 0.071 0.929 40 H 0.066 0.934 41 H 0.077 0.923 42 H 0.398 0.602 43 H 0.090 0.910 44 H 0.090 0.910 45 H 0.268 0.732 46 H 0.099 0.901 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.450 27.708 5.837 29.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.102 4.102 3 C -0.205 4.205 4 C -0.175 4.175 5 C 0.304 3.696 6 O -0.410 6.410 7 N -0.345 5.345 8 C -0.018 4.018 9 C -0.172 4.172 10 C -0.171 4.171 11 C 0.029 3.971 12 H 0.109 0.891 13 N -0.388 5.388 14 C 0.321 3.679 15 O -0.389 6.389 16 C -0.304 4.304 17 S 0.167 5.833 18 C -0.684 4.684 19 H 0.091 0.909 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.203 1.203 24 H -0.208 1.208 25 H -0.197 1.197 26 C -0.017 4.017 27 H 0.093 0.907 28 H 0.066 0.934 29 H 0.071 0.929 30 H 0.097 0.903 31 H 0.074 0.926 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.111 0.889 35 H 0.112 0.888 36 H 0.090 0.910 37 H 0.106 0.894 38 H 0.099 0.901 39 H 0.090 0.910 40 H 0.084 0.916 41 H 0.096 0.904 42 H 0.232 0.768 43 H 0.108 0.892 44 H 0.108 0.892 45 H 0.078 0.922 46 H 0.117 0.883 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -7.756 27.909 4.644 29.336 hybrid contribution -2.082 -1.644 0.893 2.799 sum -9.838 26.265 5.537 28.588 Atomic orbital electron populations 1.21958 0.94705 1.03381 1.00999 1.20894 0.96682 0.95376 0.97218 1.21861 1.00930 0.95730 1.01985 1.21814 1.02873 0.91860 1.00971 1.20781 0.78971 0.88409 0.81407 1.90683 1.39797 1.77780 1.32726 1.48050 1.55908 1.09053 1.21532 1.21837 0.92948 0.98568 0.88431 1.21901 0.97157 0.94969 1.03151 1.21952 1.01620 0.95976 0.97554 1.21134 0.96218 0.80629 0.99126 0.89105 1.45950 1.16912 1.05101 1.70844 1.20316 0.84652 0.87137 0.75777 1.90700 1.20466 1.82964 1.44749 1.23537 1.07152 0.94450 1.05268 1.85396 1.12763 0.98310 1.86872 1.22867 1.01719 0.91445 1.52350 0.90912 1.24996 0.94751 0.99304 0.94552 1.70014 1.07901 1.30208 1.42160 0.86165 0.78738 0.81961 0.78615 1.20262 1.20750 1.19703 1.21733 0.95969 0.79836 1.04178 0.90726 0.93448 0.92908 0.90317 0.92625 0.92331 0.92692 0.88911 0.88779 0.91022 0.89437 0.90130 0.91010 0.91576 0.90432 0.76788 0.89170 0.89161 0.92180 0.88266 0.91078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 8.93 37.16 0.33 -0.90 16 2 C -0.08 -0.62 2.57 -90.61 -0.23 -0.85 16 3 C -0.15 -0.80 9.19 37.16 0.34 -0.46 16 4 C -0.14 -0.89 3.52 -27.88 -0.10 -0.99 16 5 C 0.52 5.15 7.42 -10.98 -0.08 5.07 16 6 O -0.53 -7.33 13.38 5.56 0.07 -7.25 16 7 N -0.61 -5.35 2.97 -172.82 -0.51 -5.87 16 8 C 0.10 0.62 6.34 -3.71 -0.02 0.59 16 9 C -0.13 -0.97 6.08 -26.61 -0.16 -1.13 16 10 C -0.13 -1.33 5.46 -26.69 -0.15 -1.47 16 11 C 0.14 1.58 2.60 -67.85 -0.18 1.41 16 12 H 0.09 1.34 7.58 -51.93 -0.39 0.95 16 13 N -0.73 -9.58 5.08 -53.73 -0.27 -9.85 16 14 C 0.53 9.84 7.81 -10.98 -0.09 9.76 16 15 O -0.52 -11.55 15.53 5.56 0.09 -11.47 16 16 C -0.15 -3.07 6.16 36.01 0.22 -2.85 16 17 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 18 C -0.54 -15.28 9.50 30.94 0.29 -14.98 16 19 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 20 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 21 N -0.87 -26.22 13.22 55.49 0.73 -25.48 16 22 Si 0.92 21.46 29.55 -169.99 -5.02 16.43 16 23 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 24 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 25 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 26 C 0.11 1.04 5.90 -3.75 -0.02 1.02 16 27 H 0.07 0.78 5.95 -51.93 -0.31 0.48 16 28 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.08 0.73 7.96 -51.93 -0.41 0.31 16 31 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 33 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 34 H 0.09 0.43 7.94 -51.93 -0.41 0.02 16 35 H 0.09 0.49 7.70 -51.93 -0.40 0.09 16 36 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.09 0.33 5.95 -51.93 -0.31 0.02 16 38 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 41 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 42 H 0.40 3.99 8.60 -40.82 -0.35 3.64 16 43 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 44 H 0.09 1.68 8.14 -51.91 -0.42 1.26 16 45 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 46 H 0.10 1.17 7.01 -51.93 -0.36 0.81 16 47 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 389.24 15.07 5.87 5.87 Total: -1.00 -35.84 389.24 -9.19 -45.03 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: -7.99 Total: 0.22 kcal Atomic # 6 Polarization: -3.86 SS G_CDS: 0.07 Total: -3.79 kcal Atomic # 7 Polarization: -41.15 SS G_CDS: -0.05 Total: -41.20 kcal Atomic # 8 Polarization: -18.88 SS G_CDS: 0.16 Total: -18.72 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.43 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -35.84 -9.19 -45.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070372558.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.387 kcal (2) G-P(sol) polarization free energy of solvation -35.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds