Wall clock time and date at job start Tue Mar 31 2020 16:14:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53006 * 109.47035 * 2 1 4 4 C 1.53003 * 109.47217 * 120.00130 * 2 1 3 5 5 C 1.50700 * 109.46831 * 65.00248 * 4 2 1 6 6 O 1.21276 * 120.00163 * 359.97438 * 5 4 2 7 7 N 1.34780 * 119.99663 * 180.02562 * 5 4 2 8 8 C 1.46921 * 120.63095 * 359.97438 * 7 5 4 9 9 C 1.53190 * 108.77400 * 233.61227 * 8 7 5 10 10 C 1.53038 * 109.31482 * 305.36195 * 9 8 7 11 11 C 1.53045 * 109.53600 * 61.36520 * 10 9 8 12 12 H 1.09001 * 109.49329 * 58.61877 * 11 10 9 13 13 N 1.46496 * 109.50086 * 178.68194 * 11 10 9 14 14 C 1.34777 * 120.00266 * 275.00599 * 13 11 10 15 15 O 1.21274 * 120.00135 * 0.27234 * 14 13 11 16 16 C 1.50706 * 119.99766 * 179.97438 * 14 13 11 17 17 S 1.81003 * 109.46851 * 179.97438 * 16 14 13 18 18 C 1.76196 * 99.99843 * 180.02562 * 17 16 14 19 19 H 1.07998 * 120.00031 * 359.97438 * 18 17 16 20 20 C 1.38802 * 119.99637 * 180.02562 * 18 17 16 21 21 N 1.31628 * 120.00514 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 119.99567 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.46941 * 90.00284 * 22 20 18 24 24 H 1.48505 * 109.46872 * 209.99797 * 22 20 18 25 25 H 1.48493 * 109.47194 * 329.99916 * 22 20 18 26 26 C 1.46930 * 120.62746 * 180.02562 * 7 5 4 27 27 H 1.09004 * 109.46674 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46741 * 299.99630 * 1 2 3 29 29 H 1.08993 * 109.47249 * 59.99594 * 1 2 3 30 30 H 1.08998 * 109.46741 * 240.00370 * 2 1 3 31 31 H 1.08998 * 109.46839 * 179.97438 * 3 2 1 32 32 H 1.08993 * 109.47433 * 300.00292 * 3 2 1 33 33 H 1.09002 * 109.46397 * 60.00247 * 3 2 1 34 34 H 1.09000 * 109.47148 * 305.00221 * 4 2 1 35 35 H 1.08999 * 109.46933 * 185.00221 * 4 2 1 36 36 H 1.08993 * 109.58752 * 113.82538 * 8 7 5 37 37 H 1.09004 * 109.70778 * 353.46430 * 8 7 5 38 38 H 1.09005 * 109.50042 * 185.41109 * 9 8 7 39 39 H 1.09002 * 109.52814 * 65.33026 * 9 8 7 40 40 H 1.08998 * 109.46079 * 301.34982 * 10 9 8 41 41 H 1.09002 * 109.46540 * 181.38136 * 10 9 8 42 42 H 0.96999 * 119.99691 * 94.99585 * 13 11 10 43 43 H 1.09000 * 109.47161 * 299.99737 * 16 14 13 44 44 H 1.09001 * 109.46740 * 59.99879 * 16 14 13 45 45 H 0.96995 * 120.00407 * 179.97438 * 21 20 18 46 46 H 1.08997 * 109.58890 * 6.59562 * 26 7 5 47 47 H 1.09000 * 109.58077 * 246.17489 * 26 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.6414 -2.1733 1.1888 6 8 1.0111 -2.5901 0.2402 7 7 1.9846 -3.0086 2.1894 8 6 2.7476 -2.5183 3.3452 9 6 3.9914 -3.3948 3.5227 10 6 3.5665 -4.8614 3.6264 11 6 2.8593 -5.2818 2.3358 12 1 3.5306 -5.1369 1.4894 13 7 2.4808 -6.6943 2.4235 14 6 3.3704 -7.6520 2.0951 15 8 4.4859 -7.3447 1.7317 16 6 2.9812 -9.1051 2.1858 17 16 4.3802 -10.1371 1.6819 18 6 3.6669 -11.7363 1.8776 19 1 2.6476 -11.8346 2.2206 20 6 4.4154 -12.8697 1.5918 21 7 5.6583 -12.7499 1.1752 22 14 3.6594 -14.5652 1.8000 23 1 3.0100 -14.9769 0.5296 24 1 4.7220 -15.5412 2.1516 25 1 2.6454 -14.5253 2.8840 26 6 1.6037 -4.4269 2.1444 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9564 -0.8899 33 1 1.6767 1.9563 0.8901 34 1 1.6054 -0.2618 2.1370 35 1 3.1264 -0.6443 1.2951 36 1 2.1299 -2.5748 4.2414 37 1 3.0502 -1.4851 3.1745 38 1 4.5156 -3.1028 4.4327 39 1 4.6523 -3.2674 2.6653 40 1 2.8864 -4.9837 4.4694 41 1 4.4476 -5.4851 3.7773 42 1 1.5900 -6.9403 2.7180 43 1 2.7045 -9.3437 3.2127 44 1 2.1336 -9.2959 1.5274 45 1 6.1815 -13.5420 0.9758 46 1 1.1513 -4.6534 1.1789 47 1 0.8922 -4.6396 2.9424 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001070372558.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:14:25 Heat of formation + Delta-G solvation = -118.045865 kcal Electronic energy + Delta-G solvation = -25606.731115 eV Core-core repulsion = 21913.795921 eV Total energy + Delta-G solvation = -3692.935195 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.57495 -40.61835 -38.62925 -36.45261 -35.72018 -34.59662 -33.41312 -32.02746 -30.23874 -28.80427 -27.93295 -27.66048 -26.20576 -24.05864 -22.52367 -21.68279 -21.18000 -19.96832 -19.65019 -18.31212 -17.93732 -17.35989 -16.96093 -16.88927 -16.55677 -16.42231 -15.85481 -15.58193 -15.31489 -15.13545 -14.76935 -14.70463 -14.57296 -14.50285 -14.07254 -13.72005 -13.59337 -13.19353 -13.17981 -13.01368 -12.90469 -12.73493 -12.62896 -12.48910 -12.27660 -12.01223 -11.98927 -11.82551 -11.74206 -11.68820 -11.53747 -11.15528 -11.03117 -10.68645 -10.29534 -10.22322 -9.66962 -8.68438 -8.35833 -6.14180 1.23367 1.41704 1.43520 1.53720 1.56865 1.62908 1.85513 2.26001 2.39448 2.98290 3.30204 3.48624 3.64690 3.79340 3.87747 3.93584 3.97048 4.04068 4.04591 4.21875 4.28192 4.33950 4.48520 4.49265 4.57141 4.66528 4.68933 4.72636 4.74722 4.79943 4.86236 4.87752 5.02236 5.07039 5.12561 5.18126 5.22896 5.32789 5.36666 5.40751 5.46786 5.52925 5.56688 6.18692 6.36927 6.46237 7.05370 7.16656 7.20872 8.73402 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.028082 B = 0.002024 C = 0.001975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.851780 B =13829.015974 C =14170.268566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.085 4.085 3 C -0.142 4.142 4 C -0.129 4.129 5 C 0.506 3.494 6 O -0.581 6.581 7 N -0.611 5.611 8 C 0.104 3.896 9 C -0.129 4.129 10 C -0.128 4.128 11 C 0.137 3.863 12 H 0.052 0.948 13 N -0.709 5.709 14 C 0.537 3.463 15 O -0.563 6.563 16 C -0.129 4.129 17 S -0.152 6.152 18 C -0.546 4.546 19 H 0.083 0.917 20 C 0.012 3.988 21 N -0.911 5.911 22 Si 0.999 3.001 23 H -0.269 1.269 24 H -0.277 1.277 25 H -0.257 1.257 26 C 0.114 3.886 27 H 0.045 0.955 28 H 0.064 0.936 29 H 0.051 0.949 30 H 0.050 0.950 31 H 0.062 0.938 32 H 0.055 0.945 33 H 0.070 0.930 34 H 0.124 0.876 35 H 0.114 0.886 36 H 0.097 0.903 37 H 0.117 0.883 38 H 0.105 0.895 39 H 0.053 0.947 40 H 0.089 0.911 41 H 0.043 0.957 42 H 0.417 0.583 43 H 0.113 0.887 44 H 0.108 0.892 45 H 0.271 0.729 46 H 0.074 0.926 47 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.408 29.333 8.352 32.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.104 4.104 3 C -0.199 4.199 4 C -0.168 4.168 5 C 0.297 3.703 6 O -0.461 6.461 7 N -0.344 5.344 8 C -0.017 4.017 9 C -0.167 4.167 10 C -0.167 4.167 11 C 0.031 3.969 12 H 0.071 0.929 13 N -0.363 5.363 14 C 0.323 3.677 15 O -0.441 6.441 16 C -0.280 4.280 17 S 0.075 5.925 18 C -0.694 4.694 19 H 0.101 0.899 20 C -0.192 4.192 21 N -0.548 5.548 22 Si 0.821 3.179 23 H -0.194 1.194 24 H -0.202 1.202 25 H -0.181 1.181 26 C -0.010 4.010 27 H 0.064 0.936 28 H 0.083 0.917 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.081 0.919 32 H 0.074 0.926 33 H 0.089 0.911 34 H 0.142 0.858 35 H 0.132 0.868 36 H 0.115 0.885 37 H 0.135 0.865 38 H 0.124 0.876 39 H 0.072 0.928 40 H 0.108 0.892 41 H 0.062 0.938 42 H 0.255 0.745 43 H 0.131 0.869 44 H 0.126 0.874 45 H 0.080 0.920 46 H 0.093 0.907 47 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -9.753 29.578 7.203 31.966 hybrid contribution -1.513 -2.043 0.110 2.544 sum -11.266 27.535 7.313 30.636 Atomic orbital electron populations 1.21911 0.95364 1.01688 1.01802 1.20884 0.96167 0.96651 0.96702 1.21810 1.01371 0.94072 1.02654 1.21873 1.04148 0.89165 1.01615 1.21498 0.78190 0.89889 0.80717 1.90671 1.42034 1.78810 1.34581 1.48198 1.55750 1.08241 1.22215 1.22108 0.92045 0.99465 0.88060 1.21901 0.97965 0.93212 1.03668 1.21911 1.00428 0.97427 0.96907 1.21209 0.96922 0.79749 0.98996 0.92930 1.45678 1.16790 1.05052 1.68764 1.20067 0.84599 0.87299 0.75753 1.90689 1.22652 1.83454 1.47328 1.23373 1.04008 0.94016 1.06632 1.85586 1.18281 1.00742 1.87886 1.23206 1.02169 0.91685 1.52356 0.89853 1.26146 0.95139 1.04103 0.93845 1.70181 1.09672 1.31584 1.43338 0.84941 0.78027 0.75814 0.79117 1.19420 1.20230 1.18094 1.21573 0.94969 0.80547 1.03923 0.93571 0.91707 0.93032 0.93178 0.91865 0.92636 0.91077 0.85845 0.86828 0.88502 0.86533 0.87647 0.92769 0.89223 0.93796 0.74528 0.86864 0.87358 0.91986 0.90735 0.88163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.33 8.93 71.98 0.64 -1.69 16 2 C -0.09 -1.17 2.57 -10.79 -0.03 -1.20 16 3 C -0.14 -1.22 9.19 71.98 0.66 -0.56 16 4 C -0.13 -1.36 3.52 29.85 0.11 -1.25 16 5 C 0.51 9.61 7.42 87.66 0.65 10.26 16 6 O -0.58 -16.50 13.38 -3.02 -0.04 -16.54 16 7 N -0.61 -9.50 2.97 -819.08 -2.44 -11.94 16 8 C 0.10 0.82 6.34 86.36 0.55 1.37 16 9 C -0.13 -1.58 6.08 30.67 0.19 -1.39 16 10 C -0.13 -2.40 5.46 30.62 0.17 -2.24 16 11 C 0.14 3.18 2.60 45.04 0.12 3.30 16 12 H 0.05 1.65 7.58 -2.39 -0.02 1.63 16 13 N -0.71 -18.05 5.08 -442.30 -2.25 -20.30 16 14 C 0.54 20.04 7.81 87.66 0.68 20.73 16 15 O -0.56 -26.53 15.53 -3.01 -0.05 -26.58 16 16 C -0.13 -5.14 6.16 71.24 0.44 -4.71 16 17 S -0.15 -8.53 20.57 -56.49 -1.16 -9.70 16 18 C -0.55 -31.42 9.50 67.96 0.65 -30.77 16 19 H 0.08 4.44 7.80 -2.91 -0.02 4.41 16 20 C 0.01 0.71 5.49 84.86 0.47 1.18 16 21 N -0.91 -56.42 13.22 21.65 0.29 -56.13 16 22 Si 1.00 43.86 29.55 68.60 2.03 45.89 16 23 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 24 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 25 H -0.26 -10.54 7.11 99.48 0.71 -9.84 16 26 C 0.11 2.10 5.90 86.33 0.51 2.61 16 27 H 0.05 1.00 5.95 -2.39 -0.01 0.98 16 28 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.05 0.96 7.96 -2.39 -0.02 0.94 16 31 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.07 0.40 8.14 -2.39 -0.02 0.39 16 34 H 0.12 0.59 7.94 -2.39 -0.02 0.57 16 35 H 0.11 0.79 7.70 -2.39 -0.02 0.77 16 36 H 0.10 0.39 8.14 -2.39 -0.02 0.37 16 37 H 0.12 0.30 5.95 -2.38 -0.01 0.29 16 38 H 0.11 0.83 8.14 -2.38 -0.02 0.81 16 39 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.42 7.49 8.60 -92.71 -0.80 6.69 16 43 H 0.11 3.99 8.14 -2.39 -0.02 3.97 16 44 H 0.11 3.93 8.14 -2.39 -0.02 3.91 16 45 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 46 H 0.07 1.78 7.01 -2.39 -0.02 1.77 16 47 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 Total: -1.00 -84.42 389.24 2.33 -82.08 By element: Atomic # 1 Polarization: 17.42 SS G_CDS: 0.16 Total: 17.57 kcal Atomic # 6 Polarization: -10.16 SS G_CDS: 5.79 Total: -4.37 kcal Atomic # 7 Polarization: -83.97 SS G_CDS: -4.40 Total: -88.37 kcal Atomic # 8 Polarization: -43.03 SS G_CDS: -0.09 Total: -43.12 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Atomic # 16 Polarization: -8.53 SS G_CDS: -1.16 Total: -9.70 kcal Total: -84.42 2.33 -82.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070372558.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.961 kcal (2) G-P(sol) polarization free energy of solvation -84.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds