Wall clock time and date at job start Tue Mar 31 2020 16:14:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52999 * 109.47285 * 2 1 4 4 C 1.53002 * 109.47130 * 180.02562 * 3 2 1 5 5 C 1.50699 * 109.47102 * 179.97438 * 4 3 2 6 6 O 1.21279 * 120.00371 * 359.97438 * 5 4 3 7 7 N 1.34777 * 120.00026 * 179.97438 * 5 4 3 8 8 C 1.46927 * 120.63110 * 359.97438 * 7 5 4 9 9 C 1.53187 * 108.77817 * 233.61106 * 8 7 5 10 10 C 1.53038 * 109.31507 * 305.36550 * 9 8 7 11 11 C 1.53040 * 109.53824 * 61.36194 * 10 9 8 12 12 H 1.09005 * 109.49371 * 58.61959 * 11 10 9 13 13 N 1.46496 * 109.50075 * 178.68225 * 11 10 9 14 14 C 1.34777 * 120.00266 * 274.94237 * 13 11 10 15 15 O 1.21274 * 120.00135 * 0.27234 * 14 13 11 16 16 C 1.50706 * 119.99766 * 179.97438 * 14 13 11 17 17 S 1.81003 * 109.46851 * 179.97438 * 16 14 13 18 18 C 1.76196 * 99.99843 * 180.02562 * 17 16 14 19 19 H 1.07998 * 120.00031 * 359.97438 * 18 17 16 20 20 C 1.38802 * 119.99637 * 180.02562 * 18 17 16 21 21 N 1.31628 * 120.00514 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 119.99567 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.46945 * 60.00520 * 22 20 18 24 24 H 1.48497 * 109.46774 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.47349 * 299.99969 * 22 20 18 26 26 C 1.46936 * 120.60721 * 180.02562 * 7 5 4 27 27 H 1.08992 * 109.47398 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47444 * 300.00876 * 1 2 3 29 29 H 1.09002 * 109.46761 * 59.99987 * 1 2 3 30 30 H 1.09001 * 109.47115 * 240.00018 * 2 1 3 31 31 H 1.08999 * 109.47051 * 119.99581 * 2 1 3 32 32 H 1.08996 * 109.47663 * 59.99640 * 3 2 1 33 33 H 1.09002 * 109.47231 * 299.99725 * 3 2 1 34 34 H 1.09001 * 109.47249 * 60.00030 * 4 3 2 35 35 H 1.08999 * 109.47071 * 299.99499 * 4 3 2 36 36 H 1.09000 * 109.58528 * 113.82410 * 8 7 5 37 37 H 1.09001 * 109.58781 * 353.40390 * 8 7 5 38 38 H 1.09000 * 109.49908 * 185.41263 * 9 8 7 39 39 H 1.09003 * 109.52601 * 65.33783 * 9 8 7 40 40 H 1.09004 * 109.45859 * 301.34545 * 10 9 8 41 41 H 1.08992 * 109.46173 * 181.38560 * 10 9 8 42 42 H 0.96999 * 119.99691 * 94.93222 * 13 11 10 43 43 H 1.09000 * 109.47161 * 299.99737 * 16 14 13 44 44 H 1.09001 * 109.46740 * 59.99879 * 16 14 13 45 45 H 0.96995 * 120.00407 * 179.97438 * 21 20 18 46 46 H 1.08996 * 109.61278 * 6.61487 * 26 7 5 47 47 H 1.09000 * 109.55721 * 246.19069 * 26 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 6 4.0724 2.8632 -0.0013 6 8 3.2843 3.7851 -0.0017 7 7 5.3974 3.1095 -0.0014 8 6 6.3644 2.0033 -0.0003 9 6 7.3367 2.1993 1.1671 10 6 7.9711 3.5886 1.0696 11 6 6.8800 4.6574 1.1650 12 1 6.3439 4.5469 2.1077 13 7 7.4913 5.9873 1.1032 14 6 7.9696 6.5619 2.2246 15 8 7.8984 5.9760 3.2840 16 6 8.5990 7.9298 2.1608 17 16 9.1381 8.4236 3.8166 18 6 9.8145 10.0104 3.4576 19 1 9.8026 10.3860 2.4451 20 6 10.3636 10.7773 4.4759 21 7 10.3795 10.3190 5.7097 22 14 11.0813 12.4594 4.0951 23 1 10.0244 13.3300 3.5204 24 1 11.5999 13.0708 5.3450 25 1 12.1896 12.3150 3.1173 26 6 5.9019 4.4895 -0.0014 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5140 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8932 -0.5138 0.8900 32 1 1.6767 1.9564 0.8899 33 1 1.6767 1.9563 -0.8900 34 1 3.9330 0.9287 -0.8909 35 1 3.9337 0.9285 0.8891 36 1 6.9173 2.0004 -0.9397 37 1 5.8369 1.0569 0.1184 38 1 8.1167 1.4393 1.1226 39 1 6.7965 2.1114 2.1098 40 1 8.4908 3.6844 0.1163 41 1 8.6818 3.7213 1.8853 42 1 7.5520 6.4542 0.2552 43 1 9.4587 7.9033 1.4912 44 1 7.8694 8.6483 1.7872 45 1 10.7635 10.8548 6.4212 46 1 5.0696 5.1833 0.1169 47 1 6.4165 4.6899 -0.9412 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001070436621.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:14:28 Heat of formation + Delta-G solvation = -98.119647 kcal Electronic energy + Delta-G solvation = -25263.349958 eV Core-core repulsion = 21571.278830 eV Total energy + Delta-G solvation = -3692.071129 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.68614 -39.30148 -37.57392 -35.70716 -34.58072 -32.56843 -32.42744 -31.38665 -30.33989 -28.39115 -26.19809 -25.48935 -24.52381 -23.15420 -21.68291 -21.02388 -20.39996 -19.11184 -17.89129 -17.46277 -16.54996 -16.45161 -15.99856 -15.93218 -15.13263 -15.01479 -14.80258 -14.54800 -14.32133 -14.08302 -13.98391 -13.79542 -13.67352 -13.20698 -13.02839 -12.88040 -12.68265 -12.53663 -12.07893 -11.75878 -11.71071 -11.63680 -11.36573 -11.28490 -11.14336 -11.07605 -11.04352 -11.02623 -10.95676 -10.76901 -10.07587 -9.82734 -9.42826 -9.12863 -9.05388 -8.82871 -8.24443 -6.50156 -6.21421 -3.92189 2.32252 2.51379 3.05701 3.09140 3.23802 3.28068 3.32498 3.71676 4.08932 4.20652 4.40999 4.47290 4.53075 4.59496 4.60398 4.66819 4.82674 4.89282 4.94258 5.05870 5.08356 5.12815 5.13670 5.23556 5.29553 5.40546 5.42519 5.44861 5.46117 5.55953 5.61017 5.67389 5.74355 5.77833 5.87590 5.88268 5.98770 6.01199 6.08686 6.10092 6.14117 6.61083 7.04043 7.59337 7.66845 7.87466 8.35105 8.58593 9.23744 10.85938 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.027607 B = 0.001919 C = 0.001875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.988700 B =14585.810441 C =14927.097082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C -0.107 4.107 4 C -0.139 4.139 5 C 0.514 3.486 6 O -0.537 6.537 7 N -0.611 5.611 8 C 0.105 3.895 9 C -0.133 4.133 10 C -0.132 4.132 11 C 0.135 3.865 12 H 0.091 0.909 13 N -0.734 5.734 14 C 0.535 3.465 15 O -0.515 6.515 16 C -0.154 4.154 17 S -0.059 6.059 18 C -0.537 4.537 19 H 0.072 0.928 20 C 0.074 3.926 21 N -0.868 5.868 22 Si 0.919 3.081 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.274 1.274 26 C 0.106 3.894 27 H 0.053 0.947 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.072 0.928 37 H 0.088 0.912 38 H 0.080 0.920 39 H 0.071 0.929 40 H 0.066 0.934 41 H 0.077 0.923 42 H 0.398 0.602 43 H 0.090 0.910 44 H 0.090 0.910 45 H 0.269 0.731 46 H 0.099 0.901 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.777 -22.478 -16.517 30.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.162 4.162 3 C -0.145 4.145 4 C -0.179 4.179 5 C 0.303 3.697 6 O -0.414 6.414 7 N -0.346 5.346 8 C -0.018 4.018 9 C -0.172 4.172 10 C -0.171 4.171 11 C 0.029 3.971 12 H 0.109 0.891 13 N -0.388 5.388 14 C 0.321 3.679 15 O -0.389 6.389 16 C -0.304 4.304 17 S 0.167 5.833 18 C -0.685 4.685 19 H 0.090 0.910 20 C -0.135 4.135 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.199 1.199 26 C -0.017 4.017 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.111 0.889 35 H 0.113 0.887 36 H 0.090 0.910 37 H 0.106 0.894 38 H 0.099 0.901 39 H 0.090 0.910 40 H 0.084 0.916 41 H 0.096 0.904 42 H 0.232 0.768 43 H 0.108 0.892 44 H 0.108 0.892 45 H 0.079 0.921 46 H 0.117 0.883 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -12.289 -22.922 -14.539 29.796 hybrid contribution 0.824 1.975 -1.867 2.840 sum -11.465 -20.947 -16.406 28.972 Atomic orbital electron populations 1.21760 0.95649 1.01553 1.02106 1.21542 0.96229 0.96490 1.01949 1.21404 0.92579 0.96713 1.03762 1.21736 0.98199 0.93674 1.04268 1.20814 0.81436 0.91988 0.75458 1.90717 1.54681 1.46603 1.49386 1.48050 1.05779 1.06860 1.73873 1.21849 0.91107 0.89523 0.99284 1.21901 0.98856 0.97687 0.98744 1.21950 0.98451 0.93605 1.03095 1.21142 0.93420 0.82771 0.99779 0.89099 1.45949 1.63222 1.18520 1.11109 1.20317 0.77175 0.87189 0.83195 1.90699 1.55023 1.64187 1.28994 1.23539 1.03052 0.95414 1.08417 1.85392 1.76284 1.20780 1.00834 1.22831 1.45422 1.03024 0.97219 0.90961 1.24988 0.95409 0.98709 0.94424 1.70003 1.42694 1.37693 0.99904 0.86224 0.79260 0.82187 0.77830 1.19934 1.20803 1.19943 1.21748 0.98414 0.83806 0.97778 0.92770 0.92574 0.92674 0.92036 0.91935 0.91078 0.91206 0.88908 0.88745 0.90987 0.89408 0.90114 0.91005 0.91566 0.90423 0.76779 0.89166 0.89156 0.92122 0.88279 0.91047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 9.91 37.15 0.37 -0.49 16 2 C -0.12 -0.67 5.93 -26.74 -0.16 -0.83 16 3 C -0.11 -0.78 4.50 -26.73 -0.12 -0.90 16 4 C -0.14 -0.89 4.05 -27.88 -0.11 -1.01 16 5 C 0.51 5.27 7.70 -10.99 -0.08 5.18 16 6 O -0.54 -7.75 15.39 5.56 0.09 -7.67 16 7 N -0.61 -5.43 2.97 -172.79 -0.51 -5.95 16 8 C 0.11 0.61 6.34 -3.71 -0.02 0.59 16 9 C -0.13 -0.97 6.08 -26.61 -0.16 -1.13 16 10 C -0.13 -1.33 5.46 -26.69 -0.15 -1.48 16 11 C 0.14 1.59 2.60 -67.84 -0.18 1.42 16 12 H 0.09 1.35 7.58 -51.93 -0.39 0.96 16 13 N -0.73 -9.62 5.08 -53.71 -0.27 -9.89 16 14 C 0.54 9.87 7.81 -10.98 -0.09 9.78 16 15 O -0.52 -11.59 15.53 5.56 0.09 -11.50 16 16 C -0.15 -3.08 6.16 36.01 0.22 -2.86 16 17 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 18 C -0.54 -15.32 9.50 30.94 0.29 -15.03 16 19 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 20 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 21 N -0.87 -26.23 13.22 55.49 0.73 -25.49 16 22 Si 0.92 21.45 29.55 -169.99 -5.02 16.42 16 23 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 25 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 26 C 0.11 1.05 5.90 -3.73 -0.02 1.03 16 27 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 32 H 0.07 0.63 8.10 -51.93 -0.42 0.21 16 33 H 0.07 0.58 8.10 -51.93 -0.42 0.16 16 34 H 0.09 0.40 7.95 -51.93 -0.41 -0.01 16 35 H 0.09 0.47 7.69 -51.93 -0.40 0.07 16 36 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.09 0.33 5.93 -51.93 -0.31 0.02 16 38 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 41 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.40 4.00 8.60 -40.82 -0.35 3.65 16 43 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 44 H 0.09 1.68 8.14 -51.91 -0.42 1.26 16 45 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 46 H 0.10 1.19 7.00 -51.93 -0.36 0.83 16 47 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 LS Contribution 394.00 15.07 5.94 5.94 Total: -1.00 -36.27 394.00 -9.59 -45.86 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: -8.11 Total: -0.21 kcal Atomic # 6 Polarization: -3.38 SS G_CDS: -0.30 Total: -3.69 kcal Atomic # 7 Polarization: -41.28 SS G_CDS: -0.05 Total: -41.33 kcal Atomic # 8 Polarization: -19.34 SS G_CDS: 0.17 Total: -19.17 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -36.27 -9.59 -45.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070436621.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.257 kcal (2) G-P(sol) polarization free energy of solvation -36.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds