Wall clock time and date at job start Tue Mar 31 2020 16:14:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52999 * 109.47285 * 2 1 4 4 C 1.53002 * 109.47130 * 180.02562 * 3 2 1 5 5 C 1.50699 * 109.47102 * 179.97438 * 4 3 2 6 6 O 1.21279 * 120.00371 * 359.97438 * 5 4 3 7 7 N 1.34777 * 120.00026 * 179.97438 * 5 4 3 8 8 C 1.46927 * 120.63110 * 359.97438 * 7 5 4 9 9 C 1.53187 * 108.77817 * 233.61106 * 8 7 5 10 10 C 1.53038 * 109.31507 * 305.36550 * 9 8 7 11 11 C 1.53040 * 109.53824 * 61.36194 * 10 9 8 12 12 H 1.09005 * 109.49371 * 58.61959 * 11 10 9 13 13 N 1.46496 * 109.50075 * 178.68225 * 11 10 9 14 14 C 1.34777 * 120.00266 * 274.94237 * 13 11 10 15 15 O 1.21274 * 120.00135 * 0.27234 * 14 13 11 16 16 C 1.50706 * 119.99766 * 179.97438 * 14 13 11 17 17 S 1.81003 * 109.46851 * 179.97438 * 16 14 13 18 18 C 1.76196 * 99.99843 * 180.02562 * 17 16 14 19 19 H 1.07998 * 120.00031 * 359.97438 * 18 17 16 20 20 C 1.38802 * 119.99637 * 180.02562 * 18 17 16 21 21 N 1.31628 * 120.00514 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 119.99567 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.46945 * 60.00520 * 22 20 18 24 24 H 1.48497 * 109.46774 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.47349 * 299.99969 * 22 20 18 26 26 C 1.46936 * 120.60721 * 180.02562 * 7 5 4 27 27 H 1.08992 * 109.47398 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47444 * 300.00876 * 1 2 3 29 29 H 1.09002 * 109.46761 * 59.99987 * 1 2 3 30 30 H 1.09001 * 109.47115 * 240.00018 * 2 1 3 31 31 H 1.08999 * 109.47051 * 119.99581 * 2 1 3 32 32 H 1.08996 * 109.47663 * 59.99640 * 3 2 1 33 33 H 1.09002 * 109.47231 * 299.99725 * 3 2 1 34 34 H 1.09001 * 109.47249 * 60.00030 * 4 3 2 35 35 H 1.08999 * 109.47071 * 299.99499 * 4 3 2 36 36 H 1.09000 * 109.58528 * 113.82410 * 8 7 5 37 37 H 1.09001 * 109.58781 * 353.40390 * 8 7 5 38 38 H 1.09000 * 109.49908 * 185.41263 * 9 8 7 39 39 H 1.09003 * 109.52601 * 65.33783 * 9 8 7 40 40 H 1.09004 * 109.45859 * 301.34545 * 10 9 8 41 41 H 1.08992 * 109.46173 * 181.38560 * 10 9 8 42 42 H 0.96999 * 119.99691 * 94.93222 * 13 11 10 43 43 H 1.09000 * 109.47161 * 299.99737 * 16 14 13 44 44 H 1.09001 * 109.46740 * 59.99879 * 16 14 13 45 45 H 0.96995 * 120.00407 * 179.97438 * 21 20 18 46 46 H 1.08996 * 109.61278 * 6.61487 * 26 7 5 47 47 H 1.09000 * 109.55721 * 246.19069 * 26 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 6 4.0724 2.8632 -0.0013 6 8 3.2843 3.7851 -0.0017 7 7 5.3974 3.1095 -0.0014 8 6 6.3644 2.0033 -0.0003 9 6 7.3367 2.1993 1.1671 10 6 7.9711 3.5886 1.0696 11 6 6.8800 4.6574 1.1650 12 1 6.3439 4.5469 2.1077 13 7 7.4913 5.9873 1.1032 14 6 7.9696 6.5619 2.2246 15 8 7.8984 5.9760 3.2840 16 6 8.5990 7.9298 2.1608 17 16 9.1381 8.4236 3.8166 18 6 9.8145 10.0104 3.4576 19 1 9.8026 10.3860 2.4451 20 6 10.3636 10.7773 4.4759 21 7 10.3795 10.3190 5.7097 22 14 11.0813 12.4594 4.0951 23 1 10.0244 13.3300 3.5204 24 1 11.5999 13.0708 5.3450 25 1 12.1896 12.3150 3.1173 26 6 5.9019 4.4895 -0.0014 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5140 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8932 -0.5138 0.8900 32 1 1.6767 1.9564 0.8899 33 1 1.6767 1.9563 -0.8900 34 1 3.9330 0.9287 -0.8909 35 1 3.9337 0.9285 0.8891 36 1 6.9173 2.0004 -0.9397 37 1 5.8369 1.0569 0.1184 38 1 8.1167 1.4393 1.1226 39 1 6.7965 2.1114 2.1098 40 1 8.4908 3.6844 0.1163 41 1 8.6818 3.7213 1.8853 42 1 7.5520 6.4542 0.2552 43 1 9.4587 7.9033 1.4912 44 1 7.8694 8.6483 1.7872 45 1 10.7635 10.8548 6.4212 46 1 5.0696 5.1833 0.1169 47 1 6.4165 4.6899 -0.9412 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001070436621.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:14:27 Heat of formation + Delta-G solvation = -122.994725 kcal Electronic energy + Delta-G solvation = -25264.428623 eV Core-core repulsion = 21571.278830 eV Total energy + Delta-G solvation = -3693.149793 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.54084 -40.57589 -38.53125 -36.25380 -35.71486 -34.59412 -33.42473 -32.20905 -31.28274 -29.63794 -27.66800 -26.88591 -25.17210 -23.93135 -22.37796 -21.82180 -21.60708 -20.02489 -19.68341 -18.25749 -17.94112 -17.36543 -16.90066 -16.88125 -16.76118 -16.47774 -15.93219 -15.68365 -15.34048 -15.19778 -14.80596 -14.57871 -14.53865 -14.46090 -14.24297 -13.70037 -13.63418 -13.53947 -13.22233 -13.18250 -12.87518 -12.64484 -12.50445 -12.29690 -12.19125 -12.02634 -11.94385 -11.85048 -11.81100 -11.75161 -11.43567 -11.13782 -11.06322 -10.80178 -10.29820 -10.23251 -9.69838 -8.68303 -8.35397 -6.13975 1.23287 1.43256 1.43519 1.52474 1.56446 1.60618 1.84427 2.26481 2.38735 2.98664 3.30331 3.46387 3.63801 3.80119 3.90334 3.93052 3.97795 4.04325 4.06975 4.21482 4.28096 4.33357 4.46559 4.48274 4.48903 4.56550 4.62982 4.68998 4.73485 4.80319 4.88060 4.94338 5.00576 5.05793 5.12118 5.17174 5.22568 5.29626 5.37166 5.40200 5.40621 5.50815 5.54493 6.18645 6.34558 6.45797 7.05640 7.12816 7.20400 8.73593 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.027607 B = 0.001919 C = 0.001875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.988700 B =14585.810441 C =14927.097082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.118 4.118 3 C -0.106 4.106 4 C -0.131 4.131 5 C 0.505 3.495 6 O -0.591 6.591 7 N -0.610 5.610 8 C 0.104 3.896 9 C -0.129 4.129 10 C -0.128 4.128 11 C 0.137 3.863 12 H 0.052 0.948 13 N -0.709 5.709 14 C 0.537 3.463 15 O -0.564 6.564 16 C -0.129 4.129 17 S -0.151 6.151 18 C -0.548 4.548 19 H 0.083 0.917 20 C 0.014 3.986 21 N -0.911 5.911 22 Si 0.999 3.001 23 H -0.263 1.263 24 H -0.279 1.279 25 H -0.261 1.261 26 C 0.113 3.887 27 H 0.064 0.936 28 H 0.045 0.955 29 H 0.050 0.950 30 H 0.078 0.922 31 H 0.071 0.929 32 H 0.044 0.956 33 H 0.053 0.947 34 H 0.126 0.874 35 H 0.115 0.885 36 H 0.098 0.902 37 H 0.118 0.882 38 H 0.106 0.894 39 H 0.054 0.946 40 H 0.090 0.910 41 H 0.043 0.957 42 H 0.418 0.582 43 H 0.113 0.887 44 H 0.108 0.892 45 H 0.271 0.729 46 H 0.073 0.927 47 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.003 -23.882 -19.709 32.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.156 4.156 3 C -0.144 4.144 4 C -0.170 4.170 5 C 0.296 3.704 6 O -0.471 6.471 7 N -0.343 5.343 8 C -0.017 4.017 9 C -0.168 4.168 10 C -0.167 4.167 11 C 0.031 3.969 12 H 0.071 0.929 13 N -0.363 5.363 14 C 0.323 3.677 15 O -0.442 6.442 16 C -0.280 4.280 17 S 0.076 5.924 18 C -0.696 4.696 19 H 0.102 0.898 20 C -0.191 4.191 21 N -0.548 5.548 22 Si 0.820 3.180 23 H -0.188 1.188 24 H -0.204 1.204 25 H -0.185 1.185 26 C -0.011 4.011 27 H 0.083 0.917 28 H 0.064 0.936 29 H 0.069 0.931 30 H 0.097 0.903 31 H 0.090 0.910 32 H 0.063 0.937 33 H 0.072 0.928 34 H 0.144 0.856 35 H 0.133 0.867 36 H 0.116 0.884 37 H 0.136 0.864 38 H 0.124 0.876 39 H 0.072 0.928 40 H 0.108 0.892 41 H 0.062 0.938 42 H 0.255 0.745 43 H 0.132 0.868 44 H 0.126 0.874 45 H 0.080 0.920 46 H 0.092 0.908 47 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -11.506 -24.365 -17.796 32.292 hybrid contribution 0.523 2.332 -0.929 2.564 sum -10.984 -22.033 -18.725 30.931 Atomic orbital electron populations 1.21797 0.96162 1.02033 1.01463 1.21511 0.95798 0.95092 1.03176 1.21361 0.93578 0.97676 1.01772 1.21795 0.97216 0.91300 1.06723 1.21588 0.81401 0.93101 0.74322 1.90697 1.56083 1.48448 1.51899 1.48205 1.06106 1.07086 1.72922 1.22138 0.90482 0.89492 0.99561 1.21904 0.99676 0.96367 0.98823 1.21911 0.97215 0.94616 1.02938 1.21216 0.94282 0.82355 0.99032 0.92941 1.45676 1.61205 1.19003 1.10389 1.20071 0.77253 0.86623 0.83762 1.90689 1.57268 1.65137 1.31076 1.23375 1.04346 0.96670 1.03658 1.85582 1.77175 1.21858 1.07824 1.23183 1.45440 1.03095 0.97897 0.89850 1.26136 0.95597 1.03333 0.94044 1.70175 1.43819 1.39597 1.01173 0.84998 0.78730 0.76291 0.77939 1.18778 1.20371 1.18508 1.21597 0.97050 0.84588 0.97877 0.91677 0.93559 0.93089 0.90347 0.91003 0.93662 0.92801 0.85588 0.86670 0.88393 0.86398 0.87575 0.92763 0.89176 0.93768 0.74506 0.86834 0.87363 0.91979 0.90830 0.88049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.62 9.91 71.98 0.71 -0.90 16 2 C -0.12 -1.04 5.93 30.59 0.18 -0.86 16 3 C -0.11 -1.46 4.50 30.59 0.14 -1.32 16 4 C -0.13 -1.35 4.05 29.85 0.12 -1.23 16 5 C 0.51 9.81 7.70 87.66 0.67 10.48 16 6 O -0.59 -17.56 15.39 -3.03 -0.05 -17.61 16 7 N -0.61 -9.58 2.97 -818.98 -2.44 -12.02 16 8 C 0.10 0.80 6.34 86.36 0.55 1.35 16 9 C -0.13 -1.56 6.08 30.67 0.19 -1.38 16 10 C -0.13 -2.40 5.46 30.62 0.17 -2.23 16 11 C 0.14 3.19 2.60 45.06 0.12 3.31 16 12 H 0.05 1.65 7.58 -2.38 -0.02 1.64 16 13 N -0.71 -18.08 5.08 -442.24 -2.25 -20.32 16 14 C 0.54 20.08 7.81 87.66 0.68 20.76 16 15 O -0.56 -26.61 15.53 -3.01 -0.05 -26.65 16 16 C -0.13 -5.16 6.16 71.24 0.44 -4.72 16 17 S -0.15 -8.50 20.57 -56.49 -1.16 -9.67 16 18 C -0.55 -31.54 9.50 67.96 0.65 -30.90 16 19 H 0.08 4.43 7.80 -2.91 -0.02 4.41 16 20 C 0.01 0.78 5.49 84.86 0.47 1.25 16 21 N -0.91 -56.41 13.22 21.65 0.29 -56.12 16 22 Si 1.00 43.80 29.55 68.60 2.03 45.82 16 23 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 24 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 25 H -0.26 -10.77 7.11 99.48 0.71 -10.07 16 26 C 0.11 2.10 5.90 86.35 0.51 2.61 16 27 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 28 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.04 0.84 8.10 -2.39 -0.02 0.82 16 33 H 0.05 0.90 8.10 -2.39 -0.02 0.88 16 34 H 0.13 0.51 7.95 -2.39 -0.02 0.49 16 35 H 0.12 0.75 7.69 -2.39 -0.02 0.74 16 36 H 0.10 0.37 8.14 -2.39 -0.02 0.35 16 37 H 0.12 0.26 5.93 -2.39 -0.01 0.25 16 38 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.09 1.27 8.14 -2.38 -0.02 1.25 16 41 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.42 7.49 8.60 -92.71 -0.80 6.69 16 43 H 0.11 4.00 8.14 -2.39 -0.02 3.98 16 44 H 0.11 3.93 8.14 -2.39 -0.02 3.91 16 45 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 46 H 0.07 1.79 7.00 -2.39 -0.02 1.77 16 47 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 Total: -1.00 -85.43 394.00 2.12 -83.31 By element: Atomic # 1 Polarization: 16.88 SS G_CDS: 0.15 Total: 17.03 kcal Atomic # 6 Polarization: -9.37 SS G_CDS: 5.59 Total: -3.77 kcal Atomic # 7 Polarization: -84.07 SS G_CDS: -4.40 Total: -88.46 kcal Atomic # 8 Polarization: -44.17 SS G_CDS: -0.09 Total: -44.26 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.82 kcal Atomic # 16 Polarization: -8.50 SS G_CDS: -1.16 Total: -9.67 kcal Total: -85.43 2.12 -83.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070436621.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.681 kcal (2) G-P(sol) polarization free energy of solvation -85.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds