Wall clock time and date at job start Tue Mar 31 2020 16:19:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47127 * 2 1 4 4 C 1.52996 * 109.47131 * 179.97438 * 3 2 1 5 5 C 1.50698 * 109.47188 * 179.97438 * 4 3 2 6 6 O 1.21282 * 120.00025 * 0.02562 * 5 4 3 7 7 N 1.34776 * 120.00035 * 179.97438 * 5 4 3 8 8 C 1.46499 * 120.00217 * 180.02562 * 7 5 4 9 9 H 1.09005 * 109.49559 * 325.00177 * 8 7 5 10 10 C 1.53042 * 109.50145 * 204.93768 * 8 7 5 11 11 C 1.53037 * 109.53937 * 178.68307 * 10 8 7 12 12 C 1.53192 * 109.31289 * 61.36588 * 11 10 8 13 13 N 1.46925 * 108.77237 * 305.36391 * 12 11 10 14 14 C 1.34780 * 120.62738 * 233.60453 * 13 12 11 15 15 O 1.21282 * 119.99890 * 179.97438 * 14 13 12 16 16 C 1.50696 * 120.00334 * 0.02562 * 14 13 12 17 17 S 1.80998 * 109.47468 * 179.97438 * 16 14 13 18 18 C 1.76199 * 100.00177 * 180.02562 * 17 16 14 19 19 H 1.07998 * 120.00064 * 359.97438 * 18 17 16 20 20 C 1.38799 * 119.99861 * 180.02562 * 18 17 16 21 21 N 1.31625 * 120.00034 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99763 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47359 * 59.99731 * 22 20 18 24 24 H 1.48498 * 109.46993 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.47215 * 299.99639 * 22 20 18 26 26 C 1.46927 * 118.76784 * 53.59253 * 13 12 11 27 27 H 1.09001 * 109.47002 * 299.99574 * 1 2 3 28 28 H 1.08993 * 109.46955 * 60.00011 * 1 2 3 29 29 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46801 * 120.00272 * 2 1 3 31 31 H 1.09001 * 109.46998 * 239.99868 * 2 1 3 32 32 H 1.08996 * 109.46952 * 300.00302 * 3 2 1 33 33 H 1.09001 * 109.46832 * 60.00321 * 3 2 1 34 34 H 1.09000 * 109.47380 * 300.00763 * 4 3 2 35 35 H 1.09001 * 109.46997 * 60.00426 * 4 3 2 36 36 H 0.97002 * 119.99767 * 0.02562 * 7 5 4 37 37 H 1.09000 * 109.45596 * 298.70659 * 10 8 7 38 38 H 1.09002 * 109.45707 * 58.67476 * 10 8 7 39 39 H 1.09003 * 109.49584 * 181.31940 * 11 10 8 40 40 H 1.09003 * 109.49892 * 301.37642 * 11 10 8 41 41 H 1.09001 * 109.58778 * 65.15221 * 12 11 10 42 42 H 1.09001 * 109.58537 * 185.58008 * 12 11 10 43 43 H 1.09004 * 109.47034 * 299.99819 * 16 14 13 44 44 H 1.09012 * 109.47225 * 59.99272 * 16 14 13 45 45 H 0.97008 * 119.99922 * 180.02562 * 21 20 18 46 46 H 1.09004 * 109.62024 * 186.64076 * 26 13 12 47 47 H 1.09004 * 109.56520 * 66.20677 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0724 2.8633 0.0000 6 8 3.2842 3.7851 -0.0004 7 7 5.3974 3.1095 0.0009 8 6 5.8858 4.4907 0.0009 9 1 5.2140 5.1141 -0.5892 10 6 7.2899 4.5361 -0.6063 11 6 7.7878 5.9829 -0.6369 12 6 7.8624 6.5234 0.7945 13 7 6.5512 6.3499 1.4344 14 6 5.9222 7.3960 2.0060 15 8 4.8400 7.2399 2.5306 16 6 6.5632 8.7598 1.9921 17 16 5.4808 9.9437 2.8306 18 6 6.4472 11.4083 2.6705 19 1 7.4019 11.3730 2.1669 20 6 5.9819 12.6072 3.1926 21 7 4.8185 12.6501 3.8068 22 14 7.0067 14.1598 3.0236 23 1 7.2239 14.4554 1.5846 24 1 6.2926 15.2959 3.6595 25 1 8.3181 13.9625 3.6918 26 6 5.9381 5.0146 1.4395 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5139 0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.6767 1.9563 -0.8899 33 1 1.6767 1.9562 0.8900 34 1 3.9330 0.9287 0.8908 35 1 3.9337 0.9286 -0.8892 36 1 6.0277 2.3722 0.0016 37 1 7.9665 3.9319 -0.0020 38 1 7.2592 4.1412 -1.6218 39 1 8.7782 6.0173 -1.0909 40 1 7.0985 6.5926 -1.2211 41 1 8.6180 5.9723 1.3543 42 1 8.1209 7.5821 0.7723 43 1 7.5225 8.7156 2.5078 44 1 6.7192 9.0775 0.9611 45 1 4.4931 13.4882 4.1714 46 1 4.9272 5.0776 1.8424 47 1 6.5366 4.3405 2.0523 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001070452503.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:19:30 Heat of formation + Delta-G solvation = -97.216512 kcal Electronic energy + Delta-G solvation = -25493.321681 eV Core-core repulsion = 21801.289715 eV Total energy + Delta-G solvation = -3692.031966 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.46626 -39.42187 -37.32804 -35.65394 -34.68923 -32.42638 -32.36953 -31.31840 -30.23753 -28.60021 -25.57130 -25.25179 -24.96169 -23.06055 -21.47882 -21.12508 -20.44346 -19.03349 -17.70340 -17.19089 -16.75814 -16.33139 -16.18665 -15.71226 -15.20648 -14.81645 -14.78354 -14.53019 -14.22539 -14.06231 -13.90101 -13.73162 -13.30847 -13.16026 -13.01832 -12.77884 -12.62785 -12.50895 -11.93256 -11.79281 -11.62478 -11.52878 -11.31183 -11.29529 -11.20839 -11.02260 -11.01708 -10.88679 -10.82410 -10.73713 -9.98900 -9.79787 -9.50167 -9.28148 -9.03717 -8.45972 -8.19193 -6.47209 -6.18775 -3.89462 2.46154 2.71672 3.07812 3.12104 3.24884 3.28457 3.31365 3.63668 4.22362 4.35952 4.46618 4.51376 4.58041 4.62862 4.68739 4.82973 4.93001 4.95919 5.01246 5.12316 5.13335 5.15929 5.24735 5.30969 5.34805 5.51008 5.51969 5.53578 5.56420 5.62509 5.67044 5.69709 5.78191 5.85833 5.89522 5.95150 5.97721 6.00943 6.09165 6.12919 6.20511 6.65908 7.25437 7.57324 7.61482 8.05672 8.37206 8.60289 9.25934 10.88543 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.017941 B = 0.002287 C = 0.002073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.312866 B =12238.452424 C =13501.019393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.124 4.124 3 C -0.108 4.108 4 C -0.139 4.139 5 C 0.507 3.493 6 O -0.527 6.527 7 N -0.729 5.729 8 C 0.130 3.870 9 H 0.093 0.907 10 C -0.124 4.124 11 C -0.133 4.133 12 C 0.105 3.895 13 N -0.619 5.619 14 C 0.534 3.466 15 O -0.511 6.511 16 C -0.149 4.149 17 S -0.060 6.060 18 C -0.536 4.536 19 H 0.072 0.928 20 C 0.073 3.927 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.274 1.274 26 C 0.106 3.894 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.053 0.947 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.093 0.907 35 H 0.091 0.909 36 H 0.399 0.601 37 H 0.069 0.931 38 H 0.071 0.929 39 H 0.081 0.919 40 H 0.073 0.927 41 H 0.068 0.932 42 H 0.093 0.907 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.269 0.731 46 H 0.097 0.903 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.307 -26.777 -11.181 29.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.161 4.161 3 C -0.146 4.146 4 C -0.179 4.179 5 C 0.294 3.706 6 O -0.401 6.401 7 N -0.381 5.381 8 C 0.025 3.975 9 H 0.111 0.889 10 C -0.162 4.162 11 C -0.171 4.171 12 C -0.018 4.018 13 N -0.356 5.356 14 C 0.322 3.678 15 O -0.384 6.384 16 C -0.300 4.300 17 S 0.167 5.833 18 C -0.684 4.684 19 H 0.090 0.910 20 C -0.136 4.136 21 N -0.502 5.502 22 Si 0.745 3.255 23 H -0.200 1.200 24 H -0.208 1.208 25 H -0.200 1.200 26 C -0.019 4.019 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.111 0.889 35 H 0.110 0.890 36 H 0.233 0.767 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.100 0.900 40 H 0.091 0.909 41 H 0.086 0.914 42 H 0.111 0.889 43 H 0.107 0.893 44 H 0.108 0.892 45 H 0.079 0.921 46 H 0.116 0.884 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.952 -26.201 -10.288 28.303 hybrid contribution 2.407 0.772 -0.753 2.637 sum 5.359 -25.429 -11.041 28.236 Atomic orbital electron populations 1.21767 0.95644 1.01492 1.02216 1.21540 0.96254 0.96532 1.01819 1.21400 0.92581 0.96645 1.03947 1.21697 0.98358 0.93617 1.04220 1.20857 0.82129 0.91939 0.75710 1.90794 1.55040 1.46420 1.47887 1.46025 1.07268 1.08300 1.76529 1.21329 0.95890 0.83054 0.97262 0.88893 1.21786 0.95171 0.97906 1.01352 1.21900 1.02319 0.95589 0.97332 1.21759 0.84656 1.02846 0.92538 1.48037 1.20451 1.08415 1.58692 1.20369 0.85018 0.85324 0.77103 1.90714 1.20437 1.84114 1.43165 1.23551 1.04852 0.96022 1.05575 1.85461 1.25716 0.99771 1.72401 1.22817 1.07528 0.94563 1.43492 0.90999 1.24994 0.95356 0.98713 0.94542 1.70013 1.18070 1.27280 1.34860 0.86227 0.79758 0.81001 0.78515 1.19952 1.20820 1.19956 1.21825 1.00867 0.83411 0.95753 0.92508 0.92630 0.92829 0.92017 0.92118 0.91144 0.90957 0.88904 0.89049 0.76679 0.91184 0.91057 0.90038 0.90868 0.91397 0.88893 0.89262 0.89233 0.92133 0.88428 0.91962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.91 37.16 0.37 -0.64 16 2 C -0.12 -0.77 5.93 -26.73 -0.16 -0.93 16 3 C -0.11 -0.89 4.50 -26.73 -0.12 -1.01 16 4 C -0.14 -0.94 5.70 -27.89 -0.16 -1.10 16 5 C 0.51 5.43 7.80 -10.99 -0.09 5.34 16 6 O -0.53 -8.51 15.65 5.56 0.09 -8.42 16 7 N -0.73 -6.05 5.08 -53.69 -0.27 -6.32 16 8 C 0.13 1.38 2.60 -67.81 -0.18 1.20 16 9 H 0.09 1.29 7.58 -51.93 -0.39 0.90 16 10 C -0.12 -0.90 5.35 -26.69 -0.14 -1.05 16 11 C -0.13 -1.09 6.08 -26.61 -0.16 -1.25 16 12 C 0.11 1.11 6.34 -3.71 -0.02 1.09 16 13 N -0.62 -9.17 2.97 -172.76 -0.51 -9.68 16 14 C 0.53 10.72 7.72 -10.99 -0.08 10.64 16 15 O -0.51 -12.51 15.27 5.56 0.08 -12.43 16 16 C -0.15 -3.12 4.50 36.00 0.16 -2.95 16 17 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 18 C -0.54 -15.43 9.50 30.94 0.29 -15.14 16 19 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 20 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 21 N -0.87 -26.53 13.22 55.49 0.73 -25.80 16 22 Si 0.92 21.58 29.55 -169.99 -5.02 16.56 16 23 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 24 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 25 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 26 C 0.11 1.42 6.01 -3.71 -0.02 1.39 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.07 0.67 8.10 -51.93 -0.42 0.25 16 33 H 0.07 0.73 8.10 -51.93 -0.42 0.31 16 34 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.40 1.86 8.60 -40.82 -0.35 1.51 16 37 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 41 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.09 1.01 5.93 -51.93 -0.31 0.70 16 43 H 0.09 1.70 7.94 -51.91 -0.41 1.29 16 44 H 0.09 1.72 7.69 -51.91 -0.40 1.32 16 45 H 0.27 7.65 8.31 -40.82 -0.34 7.31 16 46 H 0.10 1.70 7.01 -51.93 -0.36 1.34 16 47 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 LS Contribution 394.00 15.07 5.94 5.94 Total: -1.00 -37.68 394.00 -9.70 -47.38 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: -8.11 Total: -0.95 kcal Atomic # 6 Polarization: -1.98 SS G_CDS: -0.41 Total: -2.39 kcal Atomic # 7 Polarization: -41.75 SS G_CDS: -0.05 Total: -41.80 kcal Atomic # 8 Polarization: -21.02 SS G_CDS: 0.17 Total: -20.85 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -37.68 -9.70 -47.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070452503.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.839 kcal (2) G-P(sol) polarization free energy of solvation -37.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds