Wall clock time and date at job start Tue Mar 31 2020 16:19:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47127 * 2 1 4 4 C 1.52996 * 109.47131 * 179.97438 * 3 2 1 5 5 C 1.50698 * 109.47188 * 179.97438 * 4 3 2 6 6 O 1.21282 * 120.00025 * 0.02562 * 5 4 3 7 7 N 1.34776 * 120.00035 * 179.97438 * 5 4 3 8 8 C 1.46499 * 120.00217 * 180.02562 * 7 5 4 9 9 H 1.09005 * 109.49559 * 325.00177 * 8 7 5 10 10 C 1.53042 * 109.50145 * 204.93768 * 8 7 5 11 11 C 1.53037 * 109.53937 * 178.68307 * 10 8 7 12 12 C 1.53192 * 109.31289 * 61.36588 * 11 10 8 13 13 N 1.46925 * 108.77237 * 305.36391 * 12 11 10 14 14 C 1.34780 * 120.62738 * 233.60453 * 13 12 11 15 15 O 1.21282 * 119.99890 * 179.97438 * 14 13 12 16 16 C 1.50696 * 120.00334 * 0.02562 * 14 13 12 17 17 S 1.80998 * 109.47468 * 179.97438 * 16 14 13 18 18 C 1.76199 * 100.00177 * 180.02562 * 17 16 14 19 19 H 1.07998 * 120.00064 * 359.97438 * 18 17 16 20 20 C 1.38799 * 119.99861 * 180.02562 * 18 17 16 21 21 N 1.31625 * 120.00034 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99763 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47359 * 59.99731 * 22 20 18 24 24 H 1.48498 * 109.46993 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.47215 * 299.99639 * 22 20 18 26 26 C 1.46927 * 118.76784 * 53.59253 * 13 12 11 27 27 H 1.09001 * 109.47002 * 299.99574 * 1 2 3 28 28 H 1.08993 * 109.46955 * 60.00011 * 1 2 3 29 29 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46801 * 120.00272 * 2 1 3 31 31 H 1.09001 * 109.46998 * 239.99868 * 2 1 3 32 32 H 1.08996 * 109.46952 * 300.00302 * 3 2 1 33 33 H 1.09001 * 109.46832 * 60.00321 * 3 2 1 34 34 H 1.09000 * 109.47380 * 300.00763 * 4 3 2 35 35 H 1.09001 * 109.46997 * 60.00426 * 4 3 2 36 36 H 0.97002 * 119.99767 * 0.02562 * 7 5 4 37 37 H 1.09000 * 109.45596 * 298.70659 * 10 8 7 38 38 H 1.09002 * 109.45707 * 58.67476 * 10 8 7 39 39 H 1.09003 * 109.49584 * 181.31940 * 11 10 8 40 40 H 1.09003 * 109.49892 * 301.37642 * 11 10 8 41 41 H 1.09001 * 109.58778 * 65.15221 * 12 11 10 42 42 H 1.09001 * 109.58537 * 185.58008 * 12 11 10 43 43 H 1.09004 * 109.47034 * 299.99819 * 16 14 13 44 44 H 1.09012 * 109.47225 * 59.99272 * 16 14 13 45 45 H 0.97008 * 119.99922 * 180.02562 * 21 20 18 46 46 H 1.09004 * 109.62024 * 186.64076 * 26 13 12 47 47 H 1.09004 * 109.56520 * 66.20677 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0724 2.8633 0.0000 6 8 3.2842 3.7851 -0.0004 7 7 5.3974 3.1095 0.0009 8 6 5.8858 4.4907 0.0009 9 1 5.2140 5.1141 -0.5892 10 6 7.2899 4.5361 -0.6063 11 6 7.7878 5.9829 -0.6369 12 6 7.8624 6.5234 0.7945 13 7 6.5512 6.3499 1.4344 14 6 5.9222 7.3960 2.0060 15 8 4.8400 7.2399 2.5306 16 6 6.5632 8.7598 1.9921 17 16 5.4808 9.9437 2.8306 18 6 6.4472 11.4083 2.6705 19 1 7.4019 11.3730 2.1669 20 6 5.9819 12.6072 3.1926 21 7 4.8185 12.6501 3.8068 22 14 7.0067 14.1598 3.0236 23 1 7.2239 14.4554 1.5846 24 1 6.2926 15.2959 3.6595 25 1 8.3181 13.9625 3.6918 26 6 5.9381 5.0146 1.4395 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5139 0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.6767 1.9563 -0.8899 33 1 1.6767 1.9562 0.8900 34 1 3.9330 0.9287 0.8908 35 1 3.9337 0.9286 -0.8892 36 1 6.0277 2.3722 0.0016 37 1 7.9665 3.9319 -0.0020 38 1 7.2592 4.1412 -1.6218 39 1 8.7782 6.0173 -1.0909 40 1 7.0985 6.5926 -1.2211 41 1 8.6180 5.9723 1.3543 42 1 8.1209 7.5821 0.7723 43 1 7.5225 8.7156 2.5078 44 1 6.7192 9.0775 0.9611 45 1 4.4931 13.4882 4.1714 46 1 4.9272 5.0776 1.8424 47 1 6.5366 4.3405 2.0523 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001070452503.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:19:29 Heat of formation + Delta-G solvation = -124.221340 kcal Electronic energy + Delta-G solvation = -25494.492698 eV Core-core repulsion = 21801.289715 eV Total energy + Delta-G solvation = -3693.202983 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.52054 -40.59467 -38.52270 -36.30804 -35.72438 -34.59929 -33.38448 -32.20537 -31.27778 -29.79792 -27.71031 -26.24825 -25.82524 -23.87150 -22.24988 -21.96448 -21.27991 -20.40395 -19.50383 -18.29569 -17.93944 -17.20920 -17.19725 -16.89680 -16.81360 -16.47605 -15.87168 -15.70672 -15.29456 -15.13012 -14.86542 -14.59591 -14.51735 -14.34140 -14.22791 -13.83146 -13.63082 -13.49674 -13.25737 -13.18730 -12.86837 -12.68162 -12.64443 -12.20683 -12.14937 -12.05640 -12.00303 -11.88076 -11.74542 -11.65986 -11.46034 -11.13796 -11.04186 -10.82107 -10.39376 -10.28095 -9.63133 -8.70730 -8.35176 -6.15093 1.21563 1.42517 1.43835 1.50064 1.54522 1.65077 1.92186 2.26085 2.33373 2.98646 3.22647 3.56568 3.71159 3.78977 3.87017 3.90718 3.96159 4.04325 4.07006 4.17642 4.22274 4.36913 4.39132 4.47353 4.52527 4.55220 4.63741 4.72197 4.75919 4.81053 4.90897 4.93304 5.00734 5.04872 5.10051 5.12761 5.26118 5.28760 5.38043 5.38302 5.39935 5.49624 5.58440 6.18314 6.23255 6.57368 7.05059 7.09313 7.31109 8.74033 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.017941 B = 0.002287 C = 0.002073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.312866 B =12238.452424 C =13501.019393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.116 4.116 3 C -0.109 4.109 4 C -0.128 4.128 5 C 0.499 3.501 6 O -0.594 6.594 7 N -0.709 5.709 8 C 0.137 3.863 9 H 0.050 0.950 10 C -0.113 4.113 11 C -0.129 4.129 12 C 0.093 3.907 13 N -0.605 5.605 14 C 0.527 3.473 15 O -0.571 6.571 16 C -0.119 4.119 17 S -0.161 6.161 18 C -0.544 4.544 19 H 0.086 0.914 20 C 0.010 3.990 21 N -0.913 5.913 22 Si 1.002 2.998 23 H -0.261 1.261 24 H -0.280 1.280 25 H -0.259 1.259 26 C 0.106 3.894 27 H 0.044 0.956 28 H 0.048 0.952 29 H 0.067 0.933 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.048 0.952 33 H 0.041 0.959 34 H 0.121 0.879 35 H 0.127 0.873 36 H 0.423 0.577 37 H 0.102 0.898 38 H 0.092 0.908 39 H 0.119 0.881 40 H 0.051 0.949 41 H 0.102 0.898 42 H 0.090 0.910 43 H 0.113 0.887 44 H 0.108 0.892 45 H 0.271 0.729 46 H 0.046 0.954 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.688 -29.053 -12.927 33.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.154 4.154 3 C -0.148 4.148 4 C -0.167 4.167 5 C 0.288 3.712 6 O -0.473 6.473 7 N -0.362 5.362 8 C 0.030 3.970 9 H 0.068 0.932 10 C -0.151 4.151 11 C -0.167 4.167 12 C -0.028 4.028 13 N -0.340 5.340 14 C 0.315 3.685 15 O -0.450 6.450 16 C -0.270 4.270 17 S 0.067 5.933 18 C -0.692 4.692 19 H 0.104 0.896 20 C -0.194 4.194 21 N -0.549 5.549 22 Si 0.823 3.177 23 H -0.186 1.186 24 H -0.205 1.205 25 H -0.184 1.184 26 C -0.018 4.018 27 H 0.063 0.937 28 H 0.067 0.933 29 H 0.086 0.914 30 H 0.093 0.907 31 H 0.097 0.903 32 H 0.067 0.933 33 H 0.060 0.940 34 H 0.139 0.861 35 H 0.145 0.855 36 H 0.262 0.738 37 H 0.121 0.879 38 H 0.110 0.890 39 H 0.137 0.863 40 H 0.070 0.930 41 H 0.120 0.880 42 H 0.108 0.892 43 H 0.131 0.869 44 H 0.126 0.874 45 H 0.080 0.920 46 H 0.064 0.936 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 7.428 -28.562 -12.076 31.888 hybrid contribution 1.059 1.343 -0.250 1.728 sum 8.487 -27.220 -12.326 31.063 Atomic orbital electron populations 1.21812 0.96332 1.02084 1.01346 1.21505 0.95674 0.94914 1.03293 1.21372 0.94148 0.97734 1.01501 1.21732 0.96832 0.91040 1.07111 1.21704 0.82327 0.93002 0.74210 1.90781 1.56840 1.48728 1.50986 1.45841 1.07078 1.08187 1.75104 1.21126 0.97637 0.83500 0.94702 0.93172 1.21782 0.92585 0.97908 1.02785 1.21919 1.03903 0.95643 0.95272 1.22216 0.82605 1.03679 0.94286 1.48064 1.21537 1.07559 1.56844 1.20309 0.84524 0.86229 0.77414 1.90695 1.23018 1.84977 1.46293 1.23344 1.03608 0.94425 1.05599 1.85728 1.29976 1.03203 1.74441 1.23158 1.07809 0.94579 1.43671 0.89600 1.26205 0.96638 1.02814 0.93749 1.70200 1.20295 1.28360 1.36081 0.84953 0.77998 0.75563 0.79151 1.18551 1.20487 1.18354 1.21926 0.98603 0.83146 0.98170 0.93704 0.93314 0.91424 0.90714 0.90254 0.93292 0.93972 0.86131 0.85535 0.73817 0.87928 0.88993 0.86315 0.92983 0.87989 0.89214 0.86872 0.87378 0.92008 0.93552 0.88822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.05 9.91 71.98 0.71 -1.34 16 2 C -0.12 -1.28 5.93 30.60 0.18 -1.10 16 3 C -0.11 -1.85 4.50 30.59 0.14 -1.71 16 4 C -0.13 -1.49 5.70 29.85 0.17 -1.32 16 5 C 0.50 10.67 7.80 87.66 0.68 11.35 16 6 O -0.59 -20.89 15.65 -3.04 -0.05 -20.93 16 7 N -0.71 -10.44 5.08 -442.15 -2.25 -12.68 16 8 C 0.14 2.76 2.60 45.07 0.12 2.87 16 9 H 0.05 1.47 7.58 -2.38 -0.02 1.45 16 10 C -0.11 -1.16 5.35 30.62 0.16 -1.00 16 11 C -0.13 -1.63 6.08 30.67 0.19 -1.45 16 12 C 0.09 1.67 6.34 86.36 0.55 2.22 16 13 N -0.61 -17.65 2.97 -818.88 -2.43 -20.08 16 14 C 0.53 21.96 7.72 87.66 0.68 22.64 16 15 O -0.57 -30.16 15.27 -3.04 -0.05 -30.21 16 16 C -0.12 -5.01 4.50 71.23 0.32 -4.69 16 17 S -0.16 -9.38 20.57 -56.49 -1.16 -10.54 16 18 C -0.54 -31.77 9.50 67.95 0.65 -31.13 16 19 H 0.09 4.58 7.80 -2.91 -0.02 4.56 16 20 C 0.01 0.61 5.49 84.86 0.47 1.07 16 21 N -0.91 -57.63 13.22 21.65 0.29 -57.34 16 22 Si 1.00 44.17 29.55 68.60 2.03 46.20 16 23 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 24 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 25 H -0.26 -10.71 7.11 99.48 0.71 -10.01 16 26 C 0.11 2.82 6.01 86.36 0.52 3.34 16 27 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.07 0.65 8.14 -2.39 -0.02 0.64 16 31 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.05 1.01 8.10 -2.39 -0.02 0.99 16 33 H 0.04 0.94 8.10 -2.39 -0.02 0.93 16 34 H 0.12 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.13 0.65 8.14 -2.39 -0.02 0.63 16 36 H 0.42 2.18 8.60 -92.71 -0.80 1.38 16 37 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 38 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 39 H 0.12 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 42 H 0.09 1.69 5.93 -2.39 -0.01 1.68 16 43 H 0.11 4.20 7.94 -2.39 -0.02 4.18 16 44 H 0.11 4.12 7.69 -2.39 -0.02 4.10 16 45 H 0.27 15.89 8.31 -92.70 -0.77 15.12 16 46 H 0.05 1.74 7.01 -2.39 -0.02 1.73 16 47 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 Total: -1.00 -92.80 394.00 2.06 -90.74 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: 0.15 Total: 15.08 kcal Atomic # 6 Polarization: -5.76 SS G_CDS: 5.53 Total: -0.23 kcal Atomic # 7 Polarization: -85.71 SS G_CDS: -4.39 Total: -90.10 kcal Atomic # 8 Polarization: -51.05 SS G_CDS: -0.09 Total: -51.14 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.20 kcal Atomic # 16 Polarization: -9.38 SS G_CDS: -1.16 Total: -10.54 kcal Total: -92.80 2.06 -90.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070452503.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.480 kcal (2) G-P(sol) polarization free energy of solvation -92.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds