Wall clock time and date at job start Tue Mar 31 2020 16:14:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.46741 * 2 1 4 4 C 1.53003 * 109.46741 * 180.02562 * 3 2 1 5 5 C 1.50707 * 109.46952 * 180.02562 * 4 3 2 6 6 O 1.21278 * 119.99924 * 359.97438 * 5 4 3 7 7 N 1.34780 * 119.99690 * 179.97438 * 5 4 3 8 8 C 1.47426 * 125.64645 * 179.97438 * 7 5 4 9 9 C 1.54912 * 104.83261 * 203.86243 * 8 7 5 10 10 H 1.08997 * 111.00012 * 81.06132 * 9 8 7 11 11 C 1.52996 * 111.00332 * 204.91674 * 9 8 7 12 12 C 1.55155 * 101.57968 * 322.99067 * 9 8 7 13 13 H 1.09005 * 110.72017 * 154.04262 * 12 9 8 14 14 N 1.46500 * 110.72249 * 277.13822 * 12 9 8 15 15 C 1.34773 * 120.00063 * 205.00258 * 14 12 9 16 16 O 1.21277 * 120.00108 * 359.97438 * 15 14 12 17 17 C 1.50701 * 119.99805 * 179.97438 * 15 14 12 18 18 S 1.81002 * 109.47189 * 179.97438 * 17 15 14 19 19 C 1.76199 * 100.00105 * 179.97438 * 18 17 15 20 20 H 1.07999 * 119.99997 * 0.02562 * 19 18 17 21 21 C 1.38798 * 119.99746 * 179.97438 * 19 18 17 22 22 N 1.31627 * 120.00301 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 119.99624 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47423 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.47317 * 120.00343 * 23 21 19 26 26 H 1.48507 * 109.46840 * 239.99835 * 23 21 19 27 27 C 1.47024 * 125.64847 * 359.68630 * 7 5 4 28 28 H 1.08997 * 109.47634 * 300.00143 * 1 2 3 29 29 H 1.09002 * 109.47212 * 60.00453 * 1 2 3 30 30 H 1.09005 * 109.47381 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.46936 * 239.99613 * 2 1 3 32 32 H 1.09000 * 109.46511 * 119.99784 * 2 1 3 33 33 H 1.09000 * 109.47675 * 59.99614 * 3 2 1 34 34 H 1.09000 * 109.47442 * 299.99214 * 3 2 1 35 35 H 1.08997 * 109.47634 * 59.99857 * 4 3 2 36 36 H 1.09002 * 109.47212 * 299.99546 * 4 3 2 37 37 H 1.09002 * 110.36518 * 322.69812 * 8 7 5 38 38 H 1.08997 * 110.36787 * 85.02191 * 8 7 5 39 39 H 1.09002 * 109.46921 * 58.54367 * 11 9 8 40 40 H 1.09003 * 109.47131 * 178.54888 * 11 9 8 41 41 H 1.09001 * 109.47089 * 298.54445 * 11 9 8 42 42 H 0.97005 * 119.99678 * 25.00069 * 14 12 9 43 43 H 1.09001 * 109.46859 * 300.00059 * 17 15 14 44 44 H 1.08996 * 109.47446 * 59.99873 * 17 15 14 45 45 H 0.96997 * 119.99879 * 179.97438 * 22 21 19 46 46 H 1.08995 * 109.88316 * 298.62177 * 27 7 5 47 47 H 1.09002 * 109.88101 * 59.79072 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0723 2.8634 0.0000 6 8 3.2841 3.7852 0.0004 7 7 5.3974 3.1096 0.0001 8 6 6.0232 4.4445 0.0002 9 6 7.4316 4.2222 -0.6055 10 1 7.3872 4.1847 -1.6940 11 6 8.4074 5.3027 -0.1354 12 6 7.8090 2.8374 -0.0163 13 1 8.5241 2.3259 -0.6607 14 7 8.3455 2.9797 1.3395 15 6 9.1760 2.0423 1.8375 16 8 9.4788 1.0807 1.1634 17 6 9.7283 2.1891 3.2319 18 16 10.8019 0.7809 3.6069 19 6 11.2947 1.1998 5.2459 20 1 10.9281 2.1060 5.7050 21 6 12.1530 0.3645 5.9474 22 7 12.5994 -0.7402 5.3880 23 14 12.6749 0.8083 7.6853 24 1 12.0397 2.0910 8.0806 25 1 12.2483 -0.2644 8.6194 26 1 14.1521 0.9513 7.7372 27 6 6.4581 2.0916 0.0062 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.6765 1.9564 0.8899 34 1 1.6767 1.9563 -0.8900 35 1 3.9330 0.9288 -0.8908 36 1 3.9337 0.9286 0.8892 37 1 5.4483 5.1330 -0.6192 38 1 6.1039 4.8256 1.0181 39 1 8.4661 5.2906 0.9529 40 1 9.3946 5.1081 -0.5548 41 1 8.0569 6.2792 -0.4696 42 1 8.1030 3.7487 1.8788 43 1 10.3029 3.1128 3.2997 44 1 8.9063 2.2193 3.9470 45 1 13.1995 -1.3237 5.8781 46 1 6.3847 1.4851 0.9088 47 1 6.3693 1.4584 -0.8766 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071617823.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:14:37 Heat of formation + Delta-G solvation = -92.846094 kcal Electronic energy + Delta-G solvation = -25519.267624 eV Core-core repulsion = 21827.425173 eV Total energy + Delta-G solvation = -3691.842450 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.74231 -39.32323 -37.79049 -35.59046 -34.17778 -32.65405 -32.46630 -30.77665 -30.09490 -28.16673 -27.09804 -25.52669 -24.63045 -23.11662 -21.39767 -21.02998 -20.18836 -19.31600 -17.98546 -17.25494 -16.86498 -16.37175 -16.24868 -15.60242 -15.33795 -14.93000 -14.83947 -14.63513 -14.08525 -14.03806 -13.87349 -13.62612 -13.36250 -13.11996 -12.89028 -12.70978 -12.61300 -12.54410 -12.44557 -12.03683 -11.72989 -11.61750 -11.46229 -11.28809 -11.26331 -11.10113 -11.06575 -11.02434 -10.85902 -10.78485 -10.06018 -9.84875 -9.53319 -9.14829 -9.09268 -8.88090 -8.29037 -6.54954 -6.25999 -3.96781 2.42021 2.68317 2.93548 2.95011 3.18833 3.25054 3.29338 3.61898 3.93269 4.16331 4.26451 4.39334 4.51449 4.56269 4.65015 4.87591 4.92435 4.97108 5.01690 5.09251 5.10056 5.10890 5.21043 5.24536 5.33675 5.39955 5.45451 5.48241 5.52686 5.55355 5.59327 5.66501 5.70415 5.77128 5.82042 5.83840 5.91928 5.97005 5.99891 6.07672 6.09473 6.49268 7.22935 7.55172 7.56972 7.93128 8.31402 8.48038 9.19826 10.81440 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.012601 B = 0.002461 C = 0.002194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2221.567348 B =11373.567922 C =12757.951212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C -0.104 4.104 4 C -0.138 4.138 5 C 0.529 3.471 6 O -0.544 6.544 7 N -0.620 5.620 8 C 0.107 3.893 9 C -0.112 4.112 10 H 0.098 0.902 11 C -0.141 4.141 12 C 0.140 3.860 13 H 0.114 0.886 14 N -0.729 5.729 15 C 0.535 3.465 16 O -0.514 6.514 17 C -0.154 4.154 18 S -0.059 6.059 19 C -0.535 4.535 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.272 1.272 25 H -0.280 1.280 26 H -0.280 1.280 27 C 0.087 3.913 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.093 0.907 36 H 0.094 0.906 37 H 0.080 0.920 38 H 0.068 0.932 39 H 0.061 0.939 40 H 0.067 0.933 41 H 0.062 0.938 42 H 0.399 0.601 43 H 0.090 0.910 44 H 0.089 0.911 45 H 0.268 0.732 46 H 0.079 0.921 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.107 8.354 -13.224 23.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.142 4.142 4 C -0.178 4.178 5 C 0.319 3.681 6 O -0.422 6.422 7 N -0.355 5.355 8 C -0.015 4.015 9 C -0.131 4.131 10 H 0.116 0.884 11 C -0.199 4.199 12 C 0.033 3.967 13 H 0.131 0.869 14 N -0.384 5.384 15 C 0.321 3.679 16 O -0.388 6.388 17 C -0.305 4.305 18 S 0.168 5.832 19 C -0.684 4.684 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.502 5.502 23 Si 0.745 3.255 24 H -0.196 1.196 25 H -0.205 1.205 26 H -0.205 1.205 27 C -0.037 4.037 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.111 0.889 36 H 0.113 0.887 37 H 0.099 0.901 38 H 0.086 0.914 39 H 0.080 0.920 40 H 0.086 0.914 41 H 0.081 0.919 42 H 0.234 0.766 43 H 0.108 0.892 44 H 0.108 0.892 45 H 0.078 0.922 46 H 0.097 0.903 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -16.997 7.043 -14.322 23.316 hybrid contribution -0.008 1.656 2.218 2.768 sum -17.005 8.699 -12.104 22.613 Atomic orbital electron populations 1.21757 0.95698 1.01574 1.01932 1.21555 0.96131 0.96499 1.02207 1.21377 0.92577 0.96732 1.03490 1.21712 0.98037 0.93442 1.04621 1.20471 0.80198 0.91939 0.75492 1.90697 1.54323 1.46830 1.50324 1.48553 1.05221 1.08013 1.73663 1.22320 0.92648 0.85375 1.01160 1.22688 0.94406 0.94814 1.01224 0.88383 1.21660 0.98952 0.97455 1.01792 1.21832 0.93942 0.95635 0.85266 0.86851 1.46075 1.49955 1.26765 1.15647 1.20350 0.77309 0.81785 0.88418 1.90707 1.57911 1.30096 1.60106 1.23537 1.04374 1.07597 0.94984 1.85383 1.55566 1.23907 1.18386 1.22900 1.33998 1.11416 1.00044 0.90872 1.24994 0.95209 0.94488 0.98901 1.70020 1.31300 1.11535 1.37393 0.86117 0.78425 0.78523 0.82438 1.19620 1.20544 1.20547 1.22641 0.86721 0.91362 1.03013 0.92667 0.92748 0.92729 0.91925 0.91797 0.91243 0.91320 0.88866 0.88742 0.90142 0.91361 0.92047 0.91445 0.91938 0.76552 0.89155 0.89240 0.92204 0.90301 0.90234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.91 37.16 0.37 -0.66 16 2 C -0.13 -0.90 5.93 -26.73 -0.16 -1.06 16 3 C -0.10 -0.90 4.50 -26.73 -0.12 -1.02 16 4 C -0.14 -1.19 4.89 -27.88 -0.14 -1.32 16 5 C 0.53 6.03 7.85 -10.98 -0.09 5.94 16 6 O -0.54 -8.02 16.24 5.56 0.09 -7.93 16 7 N -0.62 -6.19 3.33 -170.51 -0.57 -6.76 16 8 C 0.11 0.95 6.33 -2.53 -0.02 0.93 16 9 C -0.11 -0.83 3.51 -88.47 -0.31 -1.14 16 10 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 11 C -0.14 -0.96 8.98 37.16 0.33 -0.62 16 12 C 0.14 1.37 3.09 -66.10 -0.20 1.16 16 13 H 0.11 1.24 7.55 -51.93 -0.39 0.84 16 14 N -0.73 -8.41 4.41 -52.03 -0.23 -8.64 16 15 C 0.53 8.96 7.85 -10.99 -0.09 8.87 16 16 O -0.51 -10.54 15.51 5.56 0.09 -10.45 16 17 C -0.15 -2.92 6.16 36.01 0.22 -2.70 16 18 S -0.06 -1.54 20.57 -107.50 -2.21 -3.75 16 19 C -0.54 -14.89 9.50 30.94 0.29 -14.60 16 20 H 0.07 1.93 7.80 -52.49 -0.41 1.53 16 21 C 0.07 2.06 5.49 -17.43 -0.10 1.96 16 22 N -0.87 -25.68 13.22 55.49 0.73 -24.94 16 23 Si 0.92 21.07 29.55 -169.99 -5.02 16.05 16 24 H -0.27 -6.05 7.11 56.52 0.40 -5.64 16 25 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 26 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 27 C 0.09 0.82 6.23 -3.06 -0.02 0.80 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 29 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.07 0.68 8.10 -51.93 -0.42 0.26 16 34 H 0.07 0.64 8.10 -51.93 -0.42 0.22 16 35 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.08 0.74 8.04 -51.93 -0.42 0.32 16 38 H 0.07 0.60 8.04 -51.93 -0.42 0.18 16 39 H 0.06 0.42 6.27 -51.93 -0.33 0.10 16 40 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 41 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.40 3.79 7.05 -40.82 -0.29 3.50 16 43 H 0.09 1.58 8.14 -51.92 -0.42 1.15 16 44 H 0.09 1.58 8.14 -51.92 -0.42 1.16 16 45 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 46 H 0.08 0.86 8.04 -51.93 -0.42 0.44 16 47 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 397.54 15.07 5.99 5.99 Total: -1.00 -34.53 397.54 -9.29 -43.81 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -8.14 Total: 0.07 kcal Atomic # 6 Polarization: -3.43 SS G_CDS: -0.02 Total: -3.45 kcal Atomic # 7 Polarization: -40.28 SS G_CDS: -0.06 Total: -40.34 kcal Atomic # 8 Polarization: -18.56 SS G_CDS: 0.18 Total: -18.38 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Atomic # 16 Polarization: -1.54 SS G_CDS: -2.21 Total: -3.75 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -34.53 -9.29 -43.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071617823.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.034 kcal (2) G-P(sol) polarization free energy of solvation -34.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds