Wall clock time and date at job start Tue Mar 31 2020 16:14:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.46741 * 2 1 4 4 C 1.53003 * 109.46741 * 180.02562 * 3 2 1 5 5 C 1.50707 * 109.46952 * 180.02562 * 4 3 2 6 6 O 1.21278 * 119.99924 * 359.97438 * 5 4 3 7 7 N 1.34780 * 119.99690 * 179.97438 * 5 4 3 8 8 C 1.47426 * 125.64645 * 179.97438 * 7 5 4 9 9 C 1.54912 * 104.83261 * 203.86243 * 8 7 5 10 10 H 1.08997 * 111.00012 * 81.06132 * 9 8 7 11 11 C 1.52996 * 111.00332 * 204.91674 * 9 8 7 12 12 C 1.55155 * 101.57968 * 322.99067 * 9 8 7 13 13 H 1.09005 * 110.72017 * 154.04262 * 12 9 8 14 14 N 1.46500 * 110.72249 * 277.13822 * 12 9 8 15 15 C 1.34773 * 120.00063 * 205.00258 * 14 12 9 16 16 O 1.21277 * 120.00108 * 359.97438 * 15 14 12 17 17 C 1.50701 * 119.99805 * 179.97438 * 15 14 12 18 18 S 1.81002 * 109.47189 * 179.97438 * 17 15 14 19 19 C 1.76199 * 100.00105 * 179.97438 * 18 17 15 20 20 H 1.07999 * 119.99997 * 0.02562 * 19 18 17 21 21 C 1.38798 * 119.99746 * 179.97438 * 19 18 17 22 22 N 1.31627 * 120.00301 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 119.99624 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47423 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.47317 * 120.00343 * 23 21 19 26 26 H 1.48507 * 109.46840 * 239.99835 * 23 21 19 27 27 C 1.47024 * 125.64847 * 359.68630 * 7 5 4 28 28 H 1.08997 * 109.47634 * 300.00143 * 1 2 3 29 29 H 1.09002 * 109.47212 * 60.00453 * 1 2 3 30 30 H 1.09005 * 109.47381 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.46936 * 239.99613 * 2 1 3 32 32 H 1.09000 * 109.46511 * 119.99784 * 2 1 3 33 33 H 1.09000 * 109.47675 * 59.99614 * 3 2 1 34 34 H 1.09000 * 109.47442 * 299.99214 * 3 2 1 35 35 H 1.08997 * 109.47634 * 59.99857 * 4 3 2 36 36 H 1.09002 * 109.47212 * 299.99546 * 4 3 2 37 37 H 1.09002 * 110.36518 * 322.69812 * 8 7 5 38 38 H 1.08997 * 110.36787 * 85.02191 * 8 7 5 39 39 H 1.09002 * 109.46921 * 58.54367 * 11 9 8 40 40 H 1.09003 * 109.47131 * 178.54888 * 11 9 8 41 41 H 1.09001 * 109.47089 * 298.54445 * 11 9 8 42 42 H 0.97005 * 119.99678 * 25.00069 * 14 12 9 43 43 H 1.09001 * 109.46859 * 300.00059 * 17 15 14 44 44 H 1.08996 * 109.47446 * 59.99873 * 17 15 14 45 45 H 0.96997 * 119.99879 * 179.97438 * 22 21 19 46 46 H 1.08995 * 109.88316 * 298.62177 * 27 7 5 47 47 H 1.09002 * 109.88101 * 59.79072 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0723 2.8634 0.0000 6 8 3.2841 3.7852 0.0004 7 7 5.3974 3.1096 0.0001 8 6 6.0232 4.4445 0.0002 9 6 7.4316 4.2222 -0.6055 10 1 7.3872 4.1847 -1.6940 11 6 8.4074 5.3027 -0.1354 12 6 7.8090 2.8374 -0.0163 13 1 8.5241 2.3259 -0.6607 14 7 8.3455 2.9797 1.3395 15 6 9.1760 2.0423 1.8375 16 8 9.4788 1.0807 1.1634 17 6 9.7283 2.1891 3.2319 18 16 10.8019 0.7809 3.6069 19 6 11.2947 1.1998 5.2459 20 1 10.9281 2.1060 5.7050 21 6 12.1530 0.3645 5.9474 22 7 12.5994 -0.7402 5.3880 23 14 12.6749 0.8083 7.6853 24 1 12.0397 2.0910 8.0806 25 1 12.2483 -0.2644 8.6194 26 1 14.1521 0.9513 7.7372 27 6 6.4581 2.0916 0.0062 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.6765 1.9564 0.8899 34 1 1.6767 1.9563 -0.8900 35 1 3.9330 0.9288 -0.8908 36 1 3.9337 0.9286 0.8892 37 1 5.4483 5.1330 -0.6192 38 1 6.1039 4.8256 1.0181 39 1 8.4661 5.2906 0.9529 40 1 9.3946 5.1081 -0.5548 41 1 8.0569 6.2792 -0.4696 42 1 8.1030 3.7487 1.8788 43 1 10.3029 3.1128 3.2997 44 1 8.9063 2.2193 3.9470 45 1 13.1995 -1.3237 5.8781 46 1 6.3847 1.4851 0.9088 47 1 6.3693 1.4584 -0.8766 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071617823.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:14:36 Heat of formation + Delta-G solvation = -114.843248 kcal Electronic energy + Delta-G solvation = -25520.221492 eV Core-core repulsion = 21827.425173 eV Total energy + Delta-G solvation = -3692.796319 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.64953 -40.44886 -38.81792 -36.26345 -35.21277 -34.57644 -33.53304 -31.45373 -31.27168 -29.29939 -27.76800 -27.63869 -25.30406 -23.93726 -22.24297 -21.93207 -21.05580 -20.14815 -19.86477 -18.27394 -17.81954 -17.55508 -17.10889 -16.87345 -16.63885 -16.32136 -16.03242 -15.72152 -15.39090 -14.83105 -14.71903 -14.55919 -14.50699 -14.32966 -13.87496 -13.63168 -13.50818 -13.43073 -13.23003 -13.14944 -13.11399 -12.91450 -12.61878 -12.43939 -12.25156 -12.10471 -11.95478 -11.89942 -11.76076 -11.65650 -11.48138 -11.15317 -10.99260 -10.92488 -10.25938 -10.20747 -9.73868 -8.64241 -8.34468 -6.11173 1.27738 1.41217 1.47420 1.54876 1.58257 1.60744 1.90416 2.24020 2.29382 2.99964 3.20001 3.32707 3.48475 3.65753 3.83021 3.90371 3.96746 4.01027 4.19033 4.26306 4.31101 4.32609 4.42957 4.45719 4.52935 4.56271 4.59683 4.68335 4.72224 4.77913 4.78644 4.90930 4.96643 5.03128 5.08338 5.12102 5.17772 5.27930 5.35805 5.38582 5.43223 5.47011 5.47557 6.20682 6.39146 6.46000 7.06888 7.07693 7.22575 8.74702 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.012601 B = 0.002461 C = 0.002194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2221.567348 B =11373.567922 C =12757.951212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.123 4.123 3 C -0.100 4.100 4 C -0.135 4.135 5 C 0.524 3.476 6 O -0.584 6.584 7 N -0.617 5.617 8 C 0.103 3.897 9 C -0.093 4.093 10 H 0.114 0.886 11 C -0.141 4.141 12 C 0.136 3.864 13 H 0.107 0.893 14 N -0.704 5.704 15 C 0.541 3.459 16 O -0.556 6.556 17 C -0.133 4.133 18 S -0.145 6.145 19 C -0.546 4.546 20 H 0.081 0.919 21 C 0.014 3.986 22 N -0.910 5.910 23 Si 0.996 3.004 24 H -0.258 1.258 25 H -0.275 1.275 26 H -0.274 1.274 27 C 0.091 3.909 28 H 0.050 0.950 29 H 0.054 0.946 30 H 0.062 0.938 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.052 0.948 34 H 0.059 0.941 35 H 0.113 0.887 36 H 0.102 0.898 37 H 0.078 0.922 38 H 0.070 0.930 39 H 0.060 0.940 40 H 0.063 0.937 41 H 0.077 0.923 42 H 0.412 0.588 43 H 0.109 0.891 44 H 0.105 0.895 45 H 0.271 0.729 46 H 0.067 0.933 47 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.589 9.658 -13.081 23.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.160 4.160 3 C -0.138 4.138 4 C -0.174 4.174 5 C 0.314 3.686 6 O -0.464 6.464 7 N -0.351 5.351 8 C -0.019 4.019 9 C -0.113 4.113 10 H 0.132 0.868 11 C -0.199 4.199 12 C 0.030 3.970 13 H 0.125 0.875 14 N -0.359 5.359 15 C 0.327 3.673 16 O -0.433 6.433 17 C -0.284 4.284 18 S 0.083 5.917 19 C -0.693 4.693 20 H 0.099 0.901 21 C -0.191 4.191 22 N -0.546 5.546 23 Si 0.818 3.182 24 H -0.182 1.182 25 H -0.200 1.200 26 H -0.200 1.200 27 C -0.033 4.033 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.081 0.919 31 H 0.091 0.909 32 H 0.084 0.916 33 H 0.071 0.929 34 H 0.077 0.923 35 H 0.131 0.869 36 H 0.120 0.880 37 H 0.096 0.904 38 H 0.089 0.911 39 H 0.079 0.921 40 H 0.082 0.918 41 H 0.096 0.904 42 H 0.250 0.750 43 H 0.127 0.873 44 H 0.124 0.876 45 H 0.080 0.920 46 H 0.085 0.915 47 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -17.494 8.388 -14.190 24.037 hybrid contribution 0.065 1.334 2.085 2.476 sum -17.430 9.722 -12.105 23.342 Atomic orbital electron populations 1.21774 0.95493 1.02084 1.01766 1.21537 0.96334 0.95392 1.02780 1.21319 0.92743 0.97498 1.02212 1.21751 0.97860 0.91936 1.05854 1.20947 0.80267 0.92588 0.74758 1.90678 1.55281 1.48140 1.52315 1.48604 1.05031 1.08674 1.72780 1.22435 0.93174 0.84872 1.01439 1.22632 0.93458 0.93300 1.01882 0.86810 1.21677 0.98530 0.97921 1.01740 1.21984 0.93793 0.97401 0.83827 0.87495 1.45800 1.47988 1.25645 1.16453 1.19936 0.77846 0.82103 0.87373 1.90701 1.59797 1.32033 1.60796 1.23387 1.03481 1.04544 0.96972 1.85508 1.58199 1.29108 1.18921 1.23232 1.34059 1.11683 1.00368 0.90077 1.26081 0.95130 0.94249 1.03632 1.70173 1.32194 1.12863 1.39411 0.84947 0.78079 0.78718 0.76472 1.18174 1.20016 1.19965 1.22610 0.86167 0.91181 1.03376 0.93105 0.92713 0.91859 0.90926 0.91573 0.92900 0.92263 0.86883 0.87999 0.90386 0.91131 0.92107 0.91761 0.90442 0.74964 0.87278 0.87632 0.92013 0.91460 0.88389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 9.91 71.98 0.71 -1.22 16 2 C -0.12 -1.61 5.93 30.59 0.18 -1.42 16 3 C -0.10 -1.67 4.50 30.59 0.14 -1.53 16 4 C -0.13 -2.14 4.89 29.85 0.15 -1.99 16 5 C 0.52 11.43 7.85 87.66 0.69 12.12 16 6 O -0.58 -17.11 16.24 -3.02 -0.05 -17.16 16 7 N -0.62 -11.31 3.33 -811.77 -2.70 -14.01 16 8 C 0.10 1.61 6.33 86.86 0.55 2.15 16 9 C -0.09 -1.14 3.51 -9.40 -0.03 -1.18 16 10 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 11 C -0.14 -1.53 8.98 71.98 0.65 -0.89 16 12 C 0.14 2.38 3.09 46.18 0.14 2.52 16 13 H 0.11 2.15 7.55 -2.38 -0.02 2.14 16 14 N -0.70 -14.87 4.41 -436.92 -1.93 -16.80 16 15 C 0.54 17.58 7.85 87.66 0.69 18.26 16 16 O -0.56 -22.78 15.51 -3.02 -0.05 -22.83 16 17 C -0.13 -4.88 6.16 71.24 0.44 -4.44 16 18 S -0.14 -7.68 20.57 -56.49 -1.16 -8.84 16 19 C -0.55 -30.36 9.50 67.95 0.65 -29.72 16 20 H 0.08 4.21 7.80 -2.91 -0.02 4.19 16 21 C 0.01 0.78 5.49 84.86 0.47 1.24 16 22 N -0.91 -54.79 13.22 21.65 0.29 -54.50 16 23 Si 1.00 42.89 29.55 68.60 2.03 44.92 16 24 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 25 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 26 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 27 C 0.09 1.55 6.23 86.73 0.54 2.09 16 28 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.06 0.68 8.14 -2.38 -0.02 0.66 16 31 H 0.07 0.81 8.14 -2.39 -0.02 0.80 16 32 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.05 1.05 8.10 -2.39 -0.02 1.03 16 34 H 0.06 1.09 8.10 -2.39 -0.02 1.08 16 35 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.08 1.31 8.04 -2.39 -0.02 1.29 16 38 H 0.07 1.08 8.04 -2.39 -0.02 1.06 16 39 H 0.06 0.67 6.27 -2.39 -0.01 0.65 16 40 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 41 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 42 H 0.41 6.74 7.05 -92.70 -0.65 6.08 16 43 H 0.11 3.61 8.14 -2.39 -0.02 3.59 16 44 H 0.11 3.55 8.14 -2.40 -0.02 3.53 16 45 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 46 H 0.07 1.36 8.04 -2.39 -0.02 1.34 16 47 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 Total: -1.00 -76.61 397.54 2.67 -73.94 By element: Atomic # 1 Polarization: 18.99 SS G_CDS: 0.29 Total: 19.28 kcal Atomic # 6 Polarization: -9.95 SS G_CDS: 5.95 Total: -4.00 kcal Atomic # 7 Polarization: -80.97 SS G_CDS: -4.34 Total: -85.31 kcal Atomic # 8 Polarization: -39.89 SS G_CDS: -0.10 Total: -39.99 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.92 kcal Atomic # 16 Polarization: -7.68 SS G_CDS: -1.16 Total: -8.84 kcal Total: -76.61 2.67 -73.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071617823.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.899 kcal (2) G-P(sol) polarization free energy of solvation -76.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds