Wall clock time and date at job start Tue Mar 31 2020 16:14:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53007 * 109.46813 * 2 1 4 4 C 1.52999 * 109.46637 * 180.02562 * 3 2 1 5 5 C 1.50700 * 109.47054 * 180.02562 * 4 3 2 6 6 O 1.21282 * 119.99842 * 359.97438 * 5 4 3 7 7 N 1.34772 * 119.99978 * 180.02562 * 5 4 3 8 8 C 1.47426 * 125.64619 * 179.97438 * 7 5 4 9 9 C 1.54912 * 104.83401 * 155.84073 * 8 7 5 10 10 H 1.08996 * 111.03948 * 278.92309 * 9 8 7 11 11 C 1.53001 * 111.00645 * 155.08309 * 9 8 7 12 12 C 1.55159 * 101.57828 * 37.00900 * 9 8 7 13 13 H 1.09005 * 110.72065 * 205.95948 * 12 9 8 14 14 N 1.46499 * 110.72230 * 82.86175 * 12 9 8 15 15 C 1.34778 * 120.00278 * 157.43687 * 14 12 9 16 16 O 1.21278 * 119.99748 * 0.02562 * 15 14 12 17 17 C 1.50697 * 120.00209 * 180.02562 * 15 14 12 18 18 S 1.80999 * 109.47181 * 180.02562 * 17 15 14 19 19 C 1.76199 * 99.99825 * 179.97438 * 18 17 15 20 20 H 1.08002 * 120.00405 * 0.02562 * 19 18 17 21 21 C 1.38803 * 119.99855 * 179.72221 * 19 18 17 22 22 N 1.31634 * 119.99756 * 0.27728 * 21 19 18 23 23 Si 1.86803 * 120.00005 * 180.27923 * 21 19 18 24 24 H 1.48496 * 109.47141 * 59.99753 * 23 21 19 25 25 H 1.48497 * 109.46782 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.46993 * 300.00030 * 23 21 19 27 27 C 1.47482 * 125.59618 * 359.93723 * 7 5 4 28 28 H 1.09002 * 109.46924 * 299.99883 * 1 2 3 29 29 H 1.09003 * 109.47077 * 59.99993 * 1 2 3 30 30 H 1.08996 * 109.47010 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46924 * 240.00116 * 2 1 3 32 32 H 1.08991 * 109.46672 * 120.00034 * 2 1 3 33 33 H 1.08999 * 109.46931 * 59.99943 * 3 2 1 34 34 H 1.08995 * 109.47069 * 299.99698 * 3 2 1 35 35 H 1.09002 * 109.47130 * 60.00098 * 4 3 2 36 36 H 1.09003 * 109.47047 * 299.99881 * 4 3 2 37 37 H 1.09001 * 110.36851 * 37.00636 * 8 7 5 38 38 H 1.08999 * 110.46381 * 274.72717 * 8 7 5 39 39 H 1.09004 * 109.46913 * 307.80327 * 11 9 8 40 40 H 1.08995 * 109.47253 * 67.80307 * 11 9 8 41 41 H 1.08994 * 109.46855 * 187.80698 * 11 9 8 42 42 H 0.97000 * 119.99972 * 337.44043 * 14 12 9 43 43 H 1.08999 * 109.47278 * 59.99800 * 17 15 14 44 44 H 1.09002 * 109.46837 * 300.00183 * 17 15 14 45 45 H 0.97000 * 119.99219 * 179.97438 * 22 21 19 46 46 H 1.09008 * 110.03302 * 61.71318 * 27 7 5 47 47 H 1.09002 * 109.96713 * 300.40421 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0724 2.8633 0.0000 6 8 3.2842 3.7852 0.0004 7 7 5.3974 3.1096 -0.0009 8 6 6.0232 4.4444 -0.0010 9 6 7.4292 4.2233 0.6107 10 1 7.3812 4.1881 1.6991 11 6 8.4070 5.3030 0.1425 12 6 7.8090 2.8374 0.0256 13 1 8.5214 2.3272 0.6739 14 7 8.3509 2.9772 -1.3283 15 6 9.1439 2.0148 -1.8395 16 8 9.4085 1.0327 -1.1788 17 6 9.7018 2.1588 -3.2319 18 16 10.7192 0.7148 -3.6267 19 6 11.2271 1.1358 -5.2605 20 1 10.8968 2.0621 -5.7069 21 6 12.0568 0.2800 -5.9716 22 7 12.4599 -0.8488 -5.4273 23 14 12.6016 0.7299 -7.7008 24 1 13.3525 2.0106 -7.6657 25 1 13.4761 -0.3427 -8.2391 26 1 11.4086 0.8794 -8.5724 27 6 6.4605 2.0874 -0.0013 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 1.6766 1.9564 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 3.9330 0.9288 -0.8909 36 1 3.9337 0.9286 0.8891 37 1 5.4459 5.1341 0.6147 38 1 6.1080 4.8255 -1.0187 39 1 8.3857 5.3652 -0.9455 40 1 8.1176 6.2642 0.5672 41 1 9.4142 5.0485 0.4723 42 1 8.1390 3.7625 -1.8568 43 1 10.3124 3.0601 -3.2873 44 1 8.8816 2.2312 -3.9462 45 1 13.0394 -1.4470 -5.9244 46 1 6.3927 1.4784 -0.9029 47 1 6.3700 1.4559 0.8826 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071617824.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:14:40 Heat of formation + Delta-G solvation = -93.269187 kcal Electronic energy + Delta-G solvation = -25531.247580 eV Core-core repulsion = 21839.386783 eV Total energy + Delta-G solvation = -3691.860797 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.71913 -39.31540 -37.77625 -35.58218 -34.15850 -32.65230 -32.46153 -30.76975 -30.09535 -28.16076 -27.09415 -25.52014 -24.62162 -23.11838 -21.39156 -21.01620 -20.18942 -19.30609 -17.97863 -17.24726 -16.85423 -16.36366 -16.23809 -15.60167 -15.32879 -14.92682 -14.83441 -14.63947 -14.07873 -14.03372 -13.87116 -13.61761 -13.35147 -13.11975 -12.88887 -12.70811 -12.61013 -12.53652 -12.43634 -12.03166 -11.73324 -11.61115 -11.45884 -11.28670 -11.27878 -11.08678 -11.06649 -11.01973 -10.85201 -10.79494 -10.05250 -9.86550 -9.52996 -9.14017 -9.07851 -8.87999 -8.29724 -6.54743 -6.25383 -3.96388 2.42957 2.68352 2.93809 2.95368 3.21026 3.24797 3.27601 3.62051 3.92367 4.16935 4.26522 4.39525 4.50719 4.57087 4.65775 4.87557 4.92893 4.97698 5.01750 5.09493 5.10437 5.11071 5.21850 5.24596 5.34032 5.40209 5.45747 5.48757 5.53312 5.55996 5.59176 5.67173 5.70084 5.76940 5.82225 5.84312 5.90770 5.97709 5.99692 6.07808 6.10137 6.49579 7.23081 7.55162 7.57054 7.93989 8.31289 8.48281 9.20071 10.81929 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.012434 B = 0.002484 C = 0.002206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2251.341197 B =11271.064189 C =12690.467253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C -0.104 4.104 4 C -0.138 4.138 5 C 0.529 3.471 6 O -0.545 6.545 7 N -0.620 5.620 8 C 0.108 3.892 9 C -0.111 4.111 10 H 0.098 0.902 11 C -0.141 4.141 12 C 0.140 3.860 13 H 0.112 0.888 14 N -0.729 5.729 15 C 0.535 3.465 16 O -0.515 6.515 17 C -0.154 4.154 18 S -0.058 6.058 19 C -0.537 4.537 20 H 0.072 0.928 21 C 0.074 3.926 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.274 1.274 27 C 0.087 3.913 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.094 0.906 36 H 0.093 0.907 37 H 0.080 0.920 38 H 0.068 0.932 39 H 0.060 0.940 40 H 0.062 0.938 41 H 0.067 0.933 42 H 0.399 0.601 43 H 0.090 0.910 44 H 0.089 0.911 45 H 0.269 0.731 46 H 0.080 0.920 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.621 8.678 13.380 23.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.142 4.142 4 C -0.178 4.178 5 C 0.319 3.681 6 O -0.422 6.422 7 N -0.355 5.355 8 C -0.015 4.015 9 C -0.131 4.131 10 H 0.116 0.884 11 C -0.198 4.198 12 C 0.034 3.966 13 H 0.130 0.870 14 N -0.385 5.385 15 C 0.321 3.679 16 O -0.388 6.388 17 C -0.305 4.305 18 S 0.168 5.832 19 C -0.685 4.685 20 H 0.090 0.910 21 C -0.135 4.135 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.199 1.199 27 C -0.037 4.037 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.113 0.887 36 H 0.111 0.889 37 H 0.098 0.902 38 H 0.086 0.914 39 H 0.079 0.921 40 H 0.081 0.919 41 H 0.086 0.914 42 H 0.234 0.766 43 H 0.108 0.892 44 H 0.108 0.892 45 H 0.079 0.921 46 H 0.098 0.902 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -16.575 7.322 14.453 23.178 hybrid contribution 0.059 1.710 -2.195 2.783 sum -16.516 9.032 12.257 22.463 Atomic orbital electron populations 1.21758 0.95702 1.01571 1.01927 1.21558 0.96126 0.96503 1.02211 1.21377 0.92583 0.96728 1.03481 1.21710 0.98030 0.93449 1.04625 1.20471 0.80215 0.91938 0.75482 1.90697 1.54336 1.46828 1.50363 1.48662 1.05221 1.07973 1.73654 1.22311 0.92656 0.85367 1.01122 1.22682 0.94451 0.94717 1.01232 0.88353 1.21656 0.99049 0.97528 1.01601 1.21835 0.93902 0.95615 0.85293 0.87019 1.46073 1.52068 1.24382 1.15940 1.20349 0.77168 0.82088 0.88277 1.90707 1.57847 1.29488 1.60790 1.23538 1.04218 1.07734 0.95013 1.85375 1.58878 1.20427 1.18482 1.22821 1.35891 1.09316 1.00473 0.90978 1.24992 0.95192 0.94496 0.98865 1.70005 1.32820 1.09844 1.37591 0.86226 0.78641 0.78235 0.82421 1.19924 1.20790 1.19934 1.22729 0.86604 0.91284 1.03059 0.92746 0.92674 0.92729 0.91790 0.91927 0.91320 0.91254 0.88726 0.88883 0.90158 0.91350 0.92141 0.91908 0.91376 0.76563 0.89163 0.89246 0.92097 0.90210 0.90199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.91 37.16 0.37 -0.67 16 2 C -0.13 -0.91 5.93 -26.72 -0.16 -1.07 16 3 C -0.10 -0.91 4.50 -26.73 -0.12 -1.03 16 4 C -0.14 -1.20 4.89 -27.88 -0.14 -1.34 16 5 C 0.53 6.08 7.85 -10.99 -0.09 5.99 16 6 O -0.54 -8.07 16.24 5.56 0.09 -7.98 16 7 N -0.62 -6.25 3.34 -170.14 -0.57 -6.82 16 8 C 0.11 0.95 6.35 -2.53 -0.02 0.94 16 9 C -0.11 -0.82 3.51 -88.47 -0.31 -1.13 16 10 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 11 C -0.14 -0.94 8.85 37.16 0.33 -0.61 16 12 C 0.14 1.37 3.04 -66.10 -0.20 1.17 16 13 H 0.11 1.21 7.62 -51.93 -0.40 0.81 16 14 N -0.73 -8.42 4.51 -52.03 -0.23 -8.65 16 15 C 0.53 8.96 7.85 -10.99 -0.09 8.87 16 16 O -0.51 -10.53 15.55 5.56 0.09 -10.44 16 17 C -0.15 -2.92 6.16 36.00 0.22 -2.70 16 18 S -0.06 -1.52 20.57 -107.50 -2.21 -3.73 16 19 C -0.54 -14.94 9.50 30.94 0.29 -14.64 16 20 H 0.07 1.90 7.80 -52.49 -0.41 1.49 16 21 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 22 N -0.87 -25.70 13.22 55.49 0.73 -24.96 16 23 Si 0.92 21.07 29.55 -169.99 -5.02 16.04 16 24 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 25 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 26 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 27 C 0.09 0.84 6.26 -2.81 -0.02 0.82 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 0.65 8.10 -51.93 -0.42 0.22 16 34 H 0.07 0.68 8.10 -51.93 -0.42 0.26 16 35 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.08 0.74 8.04 -51.93 -0.42 0.33 16 38 H 0.07 0.60 7.98 -51.93 -0.41 0.18 16 39 H 0.06 0.40 6.43 -51.93 -0.33 0.07 16 40 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.40 3.79 7.01 -40.82 -0.29 3.50 16 43 H 0.09 1.58 8.14 -51.92 -0.42 1.15 16 44 H 0.09 1.58 8.14 -51.91 -0.42 1.16 16 45 H 0.27 7.43 8.31 -40.82 -0.34 7.10 16 46 H 0.08 0.88 8.04 -51.92 -0.42 0.47 16 47 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 397.68 15.07 5.99 5.99 Total: -1.00 -34.50 397.68 -9.30 -43.80 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -8.15 Total: 0.18 kcal Atomic # 6 Polarization: -3.41 SS G_CDS: -0.02 Total: -3.42 kcal Atomic # 7 Polarization: -40.37 SS G_CDS: -0.07 Total: -40.43 kcal Atomic # 8 Polarization: -18.60 SS G_CDS: 0.18 Total: -18.43 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.04 kcal Atomic # 16 Polarization: -1.52 SS G_CDS: -2.21 Total: -3.73 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -34.50 -9.30 -43.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071617824.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.472 kcal (2) G-P(sol) polarization free energy of solvation -34.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds