Wall clock time and date at job start Tue Mar 31 2020 16:14:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53007 * 109.46813 * 2 1 4 4 C 1.52999 * 109.46637 * 180.02562 * 3 2 1 5 5 C 1.50700 * 109.47054 * 180.02562 * 4 3 2 6 6 O 1.21282 * 119.99842 * 359.97438 * 5 4 3 7 7 N 1.34772 * 119.99978 * 180.02562 * 5 4 3 8 8 C 1.47426 * 125.64619 * 179.97438 * 7 5 4 9 9 C 1.54912 * 104.83401 * 155.84073 * 8 7 5 10 10 H 1.08996 * 111.03948 * 278.92309 * 9 8 7 11 11 C 1.53001 * 111.00645 * 155.08309 * 9 8 7 12 12 C 1.55159 * 101.57828 * 37.00900 * 9 8 7 13 13 H 1.09005 * 110.72065 * 205.95948 * 12 9 8 14 14 N 1.46499 * 110.72230 * 82.86175 * 12 9 8 15 15 C 1.34778 * 120.00278 * 157.43687 * 14 12 9 16 16 O 1.21278 * 119.99748 * 0.02562 * 15 14 12 17 17 C 1.50697 * 120.00209 * 180.02562 * 15 14 12 18 18 S 1.80999 * 109.47181 * 180.02562 * 17 15 14 19 19 C 1.76199 * 99.99825 * 179.97438 * 18 17 15 20 20 H 1.08002 * 120.00405 * 0.02562 * 19 18 17 21 21 C 1.38803 * 119.99855 * 179.72221 * 19 18 17 22 22 N 1.31634 * 119.99756 * 0.27728 * 21 19 18 23 23 Si 1.86803 * 120.00005 * 180.27923 * 21 19 18 24 24 H 1.48496 * 109.47141 * 59.99753 * 23 21 19 25 25 H 1.48497 * 109.46782 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.46993 * 300.00030 * 23 21 19 27 27 C 1.47482 * 125.59618 * 359.93723 * 7 5 4 28 28 H 1.09002 * 109.46924 * 299.99883 * 1 2 3 29 29 H 1.09003 * 109.47077 * 59.99993 * 1 2 3 30 30 H 1.08996 * 109.47010 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46924 * 240.00116 * 2 1 3 32 32 H 1.08991 * 109.46672 * 120.00034 * 2 1 3 33 33 H 1.08999 * 109.46931 * 59.99943 * 3 2 1 34 34 H 1.08995 * 109.47069 * 299.99698 * 3 2 1 35 35 H 1.09002 * 109.47130 * 60.00098 * 4 3 2 36 36 H 1.09003 * 109.47047 * 299.99881 * 4 3 2 37 37 H 1.09001 * 110.36851 * 37.00636 * 8 7 5 38 38 H 1.08999 * 110.46381 * 274.72717 * 8 7 5 39 39 H 1.09004 * 109.46913 * 307.80327 * 11 9 8 40 40 H 1.08995 * 109.47253 * 67.80307 * 11 9 8 41 41 H 1.08994 * 109.46855 * 187.80698 * 11 9 8 42 42 H 0.97000 * 119.99972 * 337.44043 * 14 12 9 43 43 H 1.08999 * 109.47278 * 59.99800 * 17 15 14 44 44 H 1.09002 * 109.46837 * 300.00183 * 17 15 14 45 45 H 0.97000 * 119.99219 * 179.97438 * 22 21 19 46 46 H 1.09008 * 110.03302 * 61.71318 * 27 7 5 47 47 H 1.09002 * 109.96713 * 300.40421 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0724 2.8633 0.0000 6 8 3.2842 3.7852 0.0004 7 7 5.3974 3.1096 -0.0009 8 6 6.0232 4.4444 -0.0010 9 6 7.4292 4.2233 0.6107 10 1 7.3812 4.1881 1.6991 11 6 8.4070 5.3030 0.1425 12 6 7.8090 2.8374 0.0256 13 1 8.5214 2.3272 0.6739 14 7 8.3509 2.9772 -1.3283 15 6 9.1439 2.0148 -1.8395 16 8 9.4085 1.0327 -1.1788 17 6 9.7018 2.1588 -3.2319 18 16 10.7192 0.7148 -3.6267 19 6 11.2271 1.1358 -5.2605 20 1 10.8968 2.0621 -5.7069 21 6 12.0568 0.2800 -5.9716 22 7 12.4599 -0.8488 -5.4273 23 14 12.6016 0.7299 -7.7008 24 1 13.3525 2.0106 -7.6657 25 1 13.4761 -0.3427 -8.2391 26 1 11.4086 0.8794 -8.5724 27 6 6.4605 2.0874 -0.0013 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 1.6766 1.9564 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 3.9330 0.9288 -0.8909 36 1 3.9337 0.9286 0.8891 37 1 5.4459 5.1341 0.6147 38 1 6.1080 4.8255 -1.0187 39 1 8.3857 5.3652 -0.9455 40 1 8.1176 6.2642 0.5672 41 1 9.4142 5.0485 0.4723 42 1 8.1390 3.7625 -1.8568 43 1 10.3124 3.0601 -3.2873 44 1 8.8816 2.2312 -3.9462 45 1 13.0394 -1.4470 -5.9244 46 1 6.3927 1.4784 -0.9029 47 1 6.3700 1.4559 0.8826 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071617824.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:14:39 Heat of formation + Delta-G solvation = -115.293638 kcal Electronic energy + Delta-G solvation = -25532.202632 eV Core-core repulsion = 21839.386783 eV Total energy + Delta-G solvation = -3692.815849 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.63227 -40.44317 -38.80549 -36.26386 -35.19686 -34.57195 -33.52919 -31.45435 -31.27325 -29.29695 -27.76416 -27.63157 -25.29942 -23.94463 -22.23070 -21.92929 -21.05953 -20.14753 -19.85699 -18.26824 -17.81337 -17.54923 -17.10568 -16.86690 -16.63818 -16.32701 -16.02420 -15.72026 -15.39470 -14.83310 -14.71796 -14.55147 -14.50579 -14.32332 -13.87350 -13.62999 -13.50368 -13.43477 -13.22464 -13.15699 -13.10734 -12.86613 -12.64280 -12.44461 -12.25361 -12.10693 -11.97441 -11.90019 -11.77357 -11.66826 -11.48345 -11.12185 -10.99208 -10.92182 -10.26593 -10.20731 -9.74415 -8.64135 -8.33886 -6.10849 1.27629 1.43836 1.47152 1.54802 1.56844 1.60996 1.89790 2.24485 2.29886 3.00286 3.18931 3.32945 3.48595 3.65265 3.82796 3.90265 3.97131 4.00939 4.18968 4.26159 4.30820 4.32735 4.42778 4.45565 4.53021 4.56236 4.59561 4.68135 4.72152 4.77719 4.79033 4.90779 4.96438 5.03507 5.08215 5.12052 5.17169 5.27746 5.35649 5.38317 5.42801 5.47077 5.47544 6.20440 6.38583 6.46338 7.06901 7.07887 7.22804 8.74764 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.012434 B = 0.002484 C = 0.002206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2251.341197 B =11271.064189 C =12690.467253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.123 4.123 3 C -0.099 4.099 4 C -0.135 4.135 5 C 0.523 3.477 6 O -0.584 6.584 7 N -0.618 5.618 8 C 0.103 3.897 9 C -0.093 4.093 10 H 0.114 0.886 11 C -0.141 4.141 12 C 0.136 3.864 13 H 0.106 0.894 14 N -0.704 5.704 15 C 0.541 3.459 16 O -0.556 6.556 17 C -0.133 4.133 18 S -0.144 6.144 19 C -0.548 4.548 20 H 0.081 0.919 21 C 0.014 3.986 22 N -0.910 5.910 23 Si 0.995 3.005 24 H -0.262 1.262 25 H -0.279 1.279 26 H -0.264 1.264 27 C 0.091 3.909 28 H 0.054 0.946 29 H 0.050 0.950 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.072 0.928 33 H 0.059 0.941 34 H 0.052 0.948 35 H 0.101 0.899 36 H 0.113 0.887 37 H 0.078 0.922 38 H 0.070 0.930 39 H 0.061 0.939 40 H 0.077 0.923 41 H 0.063 0.937 42 H 0.412 0.588 43 H 0.109 0.891 44 H 0.105 0.895 45 H 0.271 0.729 46 H 0.066 0.934 47 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.012 10.065 13.271 23.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.161 4.161 3 C -0.138 4.138 4 C -0.174 4.174 5 C 0.314 3.686 6 O -0.464 6.464 7 N -0.352 5.352 8 C -0.019 4.019 9 C -0.112 4.112 10 H 0.132 0.868 11 C -0.198 4.198 12 C 0.030 3.970 13 H 0.124 0.876 14 N -0.359 5.359 15 C 0.327 3.673 16 O -0.433 6.433 17 C -0.284 4.284 18 S 0.083 5.917 19 C -0.695 4.695 20 H 0.099 0.901 21 C -0.191 4.191 22 N -0.546 5.546 23 Si 0.817 3.183 24 H -0.187 1.187 25 H -0.204 1.204 26 H -0.188 1.188 27 C -0.033 4.033 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.091 0.909 33 H 0.078 0.922 34 H 0.071 0.929 35 H 0.119 0.881 36 H 0.131 0.869 37 H 0.096 0.904 38 H 0.089 0.911 39 H 0.080 0.920 40 H 0.096 0.904 41 H 0.082 0.918 42 H 0.250 0.750 43 H 0.127 0.873 44 H 0.123 0.877 45 H 0.080 0.920 46 H 0.085 0.915 47 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -16.979 8.753 14.355 23.895 hybrid contribution 0.104 1.364 -2.072 2.483 sum -16.875 10.117 12.283 23.195 Atomic orbital electron populations 1.21774 0.95473 1.02088 1.01772 1.21541 0.96351 0.95393 1.02771 1.21319 0.92726 0.97498 1.02214 1.21749 0.97876 0.91966 1.05823 1.20942 0.80299 0.92576 0.74762 1.90678 1.55291 1.48127 1.52346 1.48715 1.05023 1.08658 1.72759 1.22432 0.93230 0.84828 1.01410 1.22629 0.93471 0.93198 1.01898 0.86757 1.21674 0.98481 0.97916 1.01775 1.21993 0.93705 0.97409 0.83867 0.87571 1.45798 1.50098 1.23301 1.16709 1.19938 0.77657 0.82438 0.87264 1.90701 1.59744 1.31394 1.61476 1.23386 1.03599 1.04435 0.96968 1.85501 1.61247 1.25886 1.19053 1.23173 1.35917 1.09655 1.00802 0.90066 1.26084 0.95143 0.94260 1.03566 1.70167 1.33733 1.11170 1.39545 0.85053 0.78449 0.78242 0.76577 1.18696 1.20446 1.18824 1.22698 0.86136 0.91114 1.03342 0.92688 0.93112 0.91855 0.91600 0.90925 0.92232 0.92914 0.88050 0.86904 0.90396 0.91132 0.92019 0.90403 0.91772 0.74971 0.87275 0.87653 0.92010 0.91518 0.88370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 9.91 71.98 0.71 -1.25 16 2 C -0.12 -1.64 5.93 30.60 0.18 -1.46 16 3 C -0.10 -1.69 4.50 30.60 0.14 -1.55 16 4 C -0.13 -2.19 4.89 29.85 0.15 -2.04 16 5 C 0.52 11.56 7.85 87.66 0.69 12.25 16 6 O -0.58 -17.23 16.24 -3.04 -0.05 -17.28 16 7 N -0.62 -11.47 3.34 -810.61 -2.70 -14.17 16 8 C 0.10 1.62 6.35 86.86 0.55 2.17 16 9 C -0.09 -1.12 3.51 -9.40 -0.03 -1.16 16 10 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 11 C -0.14 -1.48 8.85 71.98 0.64 -0.85 16 12 C 0.14 2.39 3.04 46.18 0.14 2.53 16 13 H 0.11 2.12 7.62 -2.38 -0.02 2.10 16 14 N -0.70 -14.88 4.51 -436.92 -1.97 -16.85 16 15 C 0.54 17.57 7.85 87.66 0.69 18.26 16 16 O -0.56 -22.76 15.55 -3.02 -0.05 -22.81 16 17 C -0.13 -4.88 6.16 71.23 0.44 -4.45 16 18 S -0.14 -7.66 20.57 -56.49 -1.16 -8.82 16 19 C -0.55 -30.49 9.50 67.96 0.65 -29.84 16 20 H 0.08 4.20 7.80 -2.91 -0.02 4.17 16 21 C 0.01 0.81 5.49 84.86 0.47 1.27 16 22 N -0.91 -54.83 13.22 21.65 0.29 -54.54 16 23 Si 0.99 42.83 29.55 68.60 2.03 44.85 16 24 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 25 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 26 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 27 C 0.09 1.58 6.26 86.64 0.54 2.12 16 28 H 0.05 0.68 8.14 -2.39 -0.02 0.67 16 29 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.06 1.11 8.10 -2.39 -0.02 1.09 16 34 H 0.05 1.06 8.10 -2.39 -0.02 1.04 16 35 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.08 1.31 8.04 -2.39 -0.02 1.29 16 38 H 0.07 1.09 7.98 -2.39 -0.02 1.07 16 39 H 0.06 0.64 6.43 -2.39 -0.02 0.62 16 40 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 41 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 42 H 0.41 6.72 7.01 -92.71 -0.65 6.07 16 43 H 0.11 3.61 8.14 -2.39 -0.02 3.59 16 44 H 0.11 3.55 8.14 -2.39 -0.02 3.53 16 45 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 46 H 0.07 1.38 8.04 -2.38 -0.02 1.36 16 47 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -76.62 397.68 2.62 -74.00 By element: Atomic # 1 Polarization: 19.31 SS G_CDS: 0.29 Total: 19.61 kcal Atomic # 6 Polarization: -9.93 SS G_CDS: 5.94 Total: -3.98 kcal Atomic # 7 Polarization: -81.17 SS G_CDS: -4.39 Total: -85.56 kcal Atomic # 8 Polarization: -39.99 SS G_CDS: -0.10 Total: -40.09 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.85 kcal Atomic # 16 Polarization: -7.66 SS G_CDS: -1.16 Total: -8.82 kcal Total: -76.62 2.62 -74.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071617824.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.294 kcal (2) G-P(sol) polarization free energy of solvation -76.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds