Wall clock time and date at job start Tue Mar 31 2020 16:14:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47167 * 2 1 4 4 C 1.52995 * 109.46916 * 179.97438 * 3 2 1 5 5 C 1.50703 * 109.47384 * 179.97438 * 4 3 2 6 6 O 1.21286 * 119.99705 * 0.02562 * 5 4 3 7 7 N 1.34772 * 120.00412 * 179.97438 * 5 4 3 8 8 C 1.47428 * 125.64639 * 0.03007 * 7 5 4 9 9 C 1.54914 * 104.83076 * 155.83267 * 8 7 5 10 10 H 1.09002 * 111.00432 * 278.89931 * 9 8 7 11 11 N 1.46497 * 111.00275 * 155.07912 * 9 8 7 12 12 C 1.34780 * 119.99566 * 86.45745 * 11 9 8 13 13 O 1.21280 * 120.00423 * 359.97438 * 12 11 9 14 14 C 1.50701 * 119.99795 * 180.02562 * 12 11 9 15 15 S 1.81002 * 109.47156 * 179.97438 * 14 12 11 16 16 C 1.76193 * 100.00049 * 180.02562 * 15 14 12 17 17 H 1.08005 * 120.00026 * 359.97438 * 16 15 14 18 18 C 1.38806 * 120.00056 * 180.02562 * 16 15 14 19 19 N 1.31623 * 119.99640 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00053 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47361 * 89.99587 * 20 18 16 22 22 H 1.48497 * 109.47059 * 210.00081 * 20 18 16 23 23 H 1.48507 * 109.47001 * 329.99878 * 20 18 16 24 24 C 1.55159 * 101.57987 * 37.00691 * 9 8 7 25 25 H 1.09000 * 110.71885 * 82.86756 * 24 9 8 26 26 C 1.53003 * 110.71832 * 206.13391 * 24 9 8 27 27 C 1.47024 * 125.65113 * 179.97438 * 7 5 4 28 28 H 1.08997 * 109.47443 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47572 * 300.00645 * 1 2 3 30 30 H 1.09009 * 109.46915 * 60.00266 * 1 2 3 31 31 H 1.08997 * 109.46705 * 239.99651 * 2 1 3 32 32 H 1.09000 * 109.46995 * 119.99951 * 2 1 3 33 33 H 1.08997 * 109.47110 * 59.99976 * 3 2 1 34 34 H 1.09000 * 109.47123 * 299.99873 * 3 2 1 35 35 H 1.09004 * 109.47467 * 59.99770 * 4 3 2 36 36 H 1.09000 * 109.47134 * 299.99883 * 4 3 2 37 37 H 1.08997 * 110.36747 * 36.99235 * 8 7 5 38 38 H 1.08997 * 110.36478 * 274.66897 * 8 7 5 39 39 H 0.96995 * 120.00423 * 266.45050 * 11 9 8 40 40 H 1.09002 * 109.47060 * 299.99722 * 14 12 11 41 41 H 1.09001 * 109.47380 * 59.99809 * 14 12 11 42 42 H 0.97010 * 119.99946 * 180.02562 * 19 18 16 43 43 H 1.08996 * 109.47299 * 60.00013 * 26 24 9 44 44 H 1.09001 * 109.47167 * 180.02562 * 26 24 9 45 45 H 1.09002 * 109.47053 * 300.00051 * 26 24 9 46 46 H 1.09008 * 109.88044 * 300.51801 * 27 7 5 47 47 H 1.08998 * 109.88120 * 61.52287 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0725 2.8632 0.0000 6 8 3.2843 3.7851 -0.0004 7 7 5.3975 3.1095 0.0009 8 6 6.4611 2.0886 0.0020 9 6 7.6937 2.7995 -0.6104 10 1 7.6360 2.8136 -1.6988 11 7 8.9388 2.1717 -0.1613 12 6 9.4377 1.1119 -0.8282 13 8 8.8557 0.6779 -1.7996 14 6 10.7182 0.4656 -0.3660 15 16 11.1227 -0.9204 -1.4575 16 6 12.6174 -1.4747 -0.7072 17 1 13.0034 -0.9689 0.1656 18 6 13.2995 -2.5607 -1.2383 19 7 12.8293 -3.1767 -2.3022 20 14 14.8845 -3.1479 -0.4432 21 1 14.5717 -4.1665 0.5912 22 1 15.7648 -3.7473 -1.4780 23 1 15.5771 -1.9966 0.1894 24 6 7.5502 4.2299 -0.0265 25 1 7.9639 4.2786 0.9807 26 6 8.2224 5.2572 -0.9396 27 6 6.0217 4.4406 -0.0001 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 3.9337 0.9284 -0.8891 36 1 3.9329 0.9287 0.8909 37 1 6.1701 1.2369 -0.6129 38 1 6.6764 1.7661 1.0207 39 1 9.4042 2.5186 0.6157 40 1 11.5253 1.1978 -0.3935 41 1 10.5936 0.1004 0.6534 42 1 13.3057 -3.9360 -2.6732 43 1 7.7544 5.2300 -1.9236 44 1 8.1100 6.2530 -0.5108 45 1 9.2821 5.0205 -1.0347 46 1 5.7086 4.9962 -0.8841 47 1 5.7358 4.9848 0.9000 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071617825.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:14:42 Heat of formation + Delta-G solvation = -119.151399 kcal Electronic energy + Delta-G solvation = -25324.177121 eV Core-core repulsion = 21631.193987 eV Total energy + Delta-G solvation = -3692.983134 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.55385 -40.47555 -38.83143 -36.27662 -35.31811 -34.56019 -33.75241 -31.47911 -31.27546 -29.08196 -27.77855 -27.61682 -25.28541 -24.00895 -22.04704 -21.80809 -21.41946 -20.28957 -19.76618 -18.24104 -17.96992 -17.53004 -16.93248 -16.86400 -16.85239 -16.30981 -16.05264 -15.66647 -15.10896 -14.83066 -14.64307 -14.61082 -14.51684 -14.33666 -14.29003 -13.71059 -13.55965 -13.38075 -13.19917 -13.13914 -13.07399 -12.87888 -12.60321 -12.36503 -12.26332 -12.19829 -12.08031 -11.89547 -11.75733 -11.65467 -11.48715 -11.12241 -11.02440 -10.92249 -10.23752 -10.22161 -9.75833 -8.63004 -8.32739 -6.09616 1.27963 1.43790 1.46985 1.51547 1.57653 1.61280 1.82315 2.28186 2.33613 3.01776 3.20408 3.36449 3.45067 3.64097 3.81039 3.88750 3.96972 3.99946 4.14815 4.18711 4.29480 4.36184 4.39296 4.43158 4.55367 4.57186 4.60902 4.68980 4.70978 4.76075 4.84764 4.90295 4.95608 4.96843 5.06988 5.09404 5.16019 5.27207 5.33918 5.35204 5.44614 5.46384 5.47479 6.22060 6.34584 6.50750 7.03419 7.09283 7.25165 8.76163 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.013202 B = 0.002374 C = 0.002070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2120.414465 B =11790.063858 C =13523.901720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.124 4.124 3 C -0.099 4.099 4 C -0.136 4.136 5 C 0.524 3.476 6 O -0.581 6.581 7 N -0.618 5.618 8 C 0.089 3.911 9 C 0.139 3.861 10 H 0.083 0.917 11 N -0.698 5.698 12 C 0.539 3.461 13 O -0.559 6.559 14 C -0.130 4.130 15 S -0.151 6.151 16 C -0.544 4.544 17 H 0.084 0.916 18 C 0.013 3.987 19 N -0.911 5.911 20 Si 0.996 3.004 21 H -0.268 1.268 22 H -0.280 1.280 23 H -0.258 1.258 24 C -0.091 4.091 25 H 0.119 0.881 26 C -0.142 4.142 27 C 0.109 3.891 28 H 0.062 0.938 29 H 0.054 0.946 30 H 0.051 0.949 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.060 0.940 34 H 0.054 0.946 35 H 0.101 0.899 36 H 0.111 0.889 37 H 0.076 0.924 38 H 0.093 0.907 39 H 0.421 0.579 40 H 0.111 0.889 41 H 0.113 0.887 42 H 0.270 0.730 43 H 0.051 0.949 44 H 0.079 0.921 45 H 0.065 0.935 46 H 0.065 0.935 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.887 14.452 10.056 23.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.161 4.161 3 C -0.137 4.137 4 C -0.175 4.175 5 C 0.315 3.685 6 O -0.461 6.461 7 N -0.352 5.352 8 C -0.035 4.035 9 C 0.033 3.967 10 H 0.101 0.899 11 N -0.353 5.353 12 C 0.326 3.674 13 O -0.437 6.437 14 C -0.281 4.281 15 S 0.076 5.924 16 C -0.692 4.692 17 H 0.102 0.898 18 C -0.192 4.192 19 N -0.548 5.548 20 Si 0.818 3.182 21 H -0.194 1.194 22 H -0.206 1.206 23 H -0.182 1.182 24 C -0.111 4.111 25 H 0.137 0.863 26 C -0.200 4.200 27 C -0.013 4.013 28 H 0.081 0.919 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.078 0.922 34 H 0.073 0.927 35 H 0.120 0.880 36 H 0.129 0.871 37 H 0.094 0.906 38 H 0.111 0.889 39 H 0.259 0.741 40 H 0.129 0.871 41 H 0.131 0.869 42 H 0.079 0.921 43 H 0.070 0.930 44 H 0.098 0.902 45 H 0.084 0.916 46 H 0.083 0.917 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -16.330 14.094 8.326 23.122 hybrid contribution 1.684 0.042 1.322 2.142 sum -14.646 14.136 9.648 22.526 Atomic orbital electron populations 1.21768 0.95348 1.02096 1.01827 1.21544 0.96451 0.95412 1.02735 1.21318 0.92545 0.97508 1.02329 1.21759 0.98032 0.91930 1.05779 1.20946 0.80198 0.92590 0.74759 1.90676 1.55208 1.48073 1.52160 1.48494 1.05066 1.08687 1.72923 1.22795 0.86767 0.91465 1.02476 1.22051 0.82802 0.92399 0.99488 0.89913 1.45528 1.25075 1.31522 1.33175 1.20049 0.85246 0.79845 0.82309 1.90714 1.61406 1.63392 1.28153 1.23376 0.98209 1.01810 1.04740 1.85583 1.31287 1.34694 1.40813 1.23207 1.09791 1.19049 1.17161 0.89824 1.26098 1.02097 0.95623 0.95378 1.70179 1.40817 1.21259 1.22525 0.84987 0.76676 0.78700 0.77842 1.19369 1.20563 1.18158 1.22470 0.93712 0.92719 1.02152 0.86342 1.21773 1.00783 0.98716 0.98680 1.22115 0.91938 0.84618 1.02674 0.91885 0.92656 0.92997 0.91619 0.91061 0.92155 0.92711 0.88035 0.87085 0.90563 0.88934 0.74087 0.87120 0.86886 0.92080 0.93035 0.90218 0.91578 0.91694 0.90356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 9.91 71.98 0.71 -1.33 16 2 C -0.12 -1.77 5.93 30.59 0.18 -1.59 16 3 C -0.10 -1.76 4.50 30.59 0.14 -1.62 16 4 C -0.14 -2.36 4.71 29.85 0.14 -2.22 16 5 C 0.52 12.06 7.85 87.66 0.69 12.75 16 6 O -0.58 -17.46 16.31 -3.05 -0.05 -17.51 16 7 N -0.62 -12.06 3.33 -811.79 -2.70 -14.76 16 8 C 0.09 1.61 6.39 86.86 0.55 2.17 16 9 C 0.14 2.56 2.76 46.39 0.13 2.69 16 10 H 0.08 1.99 7.64 -2.39 -0.02 1.97 16 11 N -0.70 -13.67 5.23 -435.95 -2.28 -15.95 16 12 C 0.54 17.12 7.85 87.66 0.69 17.80 16 13 O -0.56 -23.19 15.61 -3.03 -0.05 -23.23 16 14 C -0.13 -4.60 6.16 71.24 0.44 -4.16 16 15 S -0.15 -7.94 20.57 -56.49 -1.16 -9.11 16 16 C -0.54 -29.84 9.50 67.96 0.65 -29.20 16 17 H 0.08 4.23 7.80 -2.91 -0.02 4.21 16 18 C 0.01 0.71 5.49 84.86 0.47 1.17 16 19 N -0.91 -54.73 13.22 21.65 0.29 -54.44 16 20 Si 1.00 42.35 29.55 68.60 2.03 44.38 16 21 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 22 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 23 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 24 C -0.09 -1.11 3.17 -9.61 -0.03 -1.14 16 25 H 0.12 0.90 8.00 -2.39 -0.02 0.88 16 26 C -0.14 -1.64 9.16 71.98 0.66 -0.98 16 27 C 0.11 1.77 6.46 86.72 0.56 2.33 16 28 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.05 0.71 8.14 -2.38 -0.02 0.69 16 31 H 0.07 0.92 8.14 -2.39 -0.02 0.91 16 32 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.06 1.16 8.10 -2.39 -0.02 1.14 16 34 H 0.05 1.12 8.10 -2.39 -0.02 1.10 16 35 H 0.10 1.67 7.85 -2.38 -0.02 1.65 16 36 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.08 1.60 7.48 -2.39 -0.02 1.58 16 38 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.42 5.16 8.51 -92.71 -0.79 4.37 16 40 H 0.11 3.49 8.14 -2.39 -0.02 3.47 16 41 H 0.11 3.51 8.14 -2.40 -0.02 3.49 16 42 H 0.27 15.11 8.31 -92.70 -0.77 14.34 16 43 H 0.05 0.71 8.06 -2.39 -0.02 0.69 16 44 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 45 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 46 H 0.06 1.17 7.77 -2.38 -0.02 1.15 16 47 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 Total: -1.00 -77.49 400.30 2.20 -75.29 By element: Atomic # 1 Polarization: 18.49 SS G_CDS: 0.15 Total: 18.65 kcal Atomic # 6 Polarization: -9.29 SS G_CDS: 5.97 Total: -3.32 kcal Atomic # 7 Polarization: -80.46 SS G_CDS: -4.69 Total: -85.15 kcal Atomic # 8 Polarization: -40.64 SS G_CDS: -0.10 Total: -40.74 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 2.03 Total: 44.38 kcal Atomic # 16 Polarization: -7.94 SS G_CDS: -1.16 Total: -9.11 kcal Total: -77.49 2.20 -75.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071617825.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.861 kcal (2) G-P(sol) polarization free energy of solvation -77.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds