Wall clock time and date at job start Tue Mar 31 2020 16:14:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46886 * 2 1 4 4 C 1.52997 * 109.47060 * 180.02562 * 3 2 1 5 5 C 1.50697 * 109.47466 * 180.02562 * 4 3 2 6 6 O 1.21288 * 120.00038 * 0.02562 * 5 4 3 7 7 N 1.34777 * 120.00369 * 180.02562 * 5 4 3 8 8 C 1.47019 * 125.64846 * 179.71752 * 7 5 4 9 9 C 1.54341 * 107.26297 * 178.84906 * 8 7 5 10 10 H 1.08994 * 110.51140 * 96.45472 * 9 8 7 11 11 C 1.53007 * 110.99964 * 219.60162 * 9 8 7 12 12 C 1.55154 * 103.02206 * 338.13870 * 9 8 7 13 13 H 1.08991 * 111.00734 * 277.23586 * 12 9 8 14 14 N 1.46500 * 111.00362 * 153.38079 * 12 9 8 15 15 C 1.34772 * 120.00094 * 161.35194 * 14 12 9 16 16 O 1.21284 * 120.00224 * 0.02562 * 15 14 12 17 17 C 1.50697 * 120.00201 * 179.97438 * 15 14 12 18 18 S 1.81000 * 109.47369 * 179.97438 * 17 15 14 19 19 C 1.76204 * 100.00212 * 179.97438 * 18 17 15 20 20 H 1.08007 * 119.99654 * 0.02562 * 19 18 17 21 21 C 1.38794 * 120.00025 * 179.97438 * 19 18 17 22 22 N 1.31632 * 119.99710 * 180.02562 * 21 19 18 23 23 Si 1.86798 * 119.99997 * 0.02562 * 21 19 18 24 24 H 1.48493 * 109.47471 * 89.99647 * 23 21 19 25 25 H 1.48499 * 109.46944 * 209.99629 * 23 21 19 26 26 H 1.48500 * 109.47005 * 329.99278 * 23 21 19 27 27 C 1.47423 * 125.64803 * 0.02562 * 7 5 4 28 28 H 1.09002 * 109.47508 * 59.99571 * 1 2 3 29 29 H 1.09000 * 109.47437 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47109 * 299.99380 * 1 2 3 31 31 H 1.09001 * 109.46652 * 240.00345 * 2 1 3 32 32 H 1.08992 * 109.47514 * 120.00434 * 2 1 3 33 33 H 1.09002 * 109.47398 * 300.00496 * 3 2 1 34 34 H 1.09001 * 109.47194 * 60.00677 * 3 2 1 35 35 H 1.09002 * 109.47153 * 300.00319 * 4 3 2 36 36 H 1.08998 * 109.47533 * 59.99948 * 4 3 2 37 37 H 1.09000 * 109.88251 * 298.39485 * 8 7 5 38 38 H 1.09004 * 109.88041 * 59.56299 * 8 7 5 39 39 H 1.08999 * 109.46996 * 173.78316 * 11 9 8 40 40 H 1.08998 * 109.46838 * 293.78023 * 11 9 8 41 41 H 1.08994 * 109.46825 * 53.78166 * 11 9 8 42 42 H 0.97007 * 119.99867 * 341.35181 * 14 12 9 43 43 H 1.09005 * 109.47361 * 300.00224 * 17 15 14 44 44 H 1.09001 * 109.47089 * 60.00035 * 17 15 14 45 45 H 0.96999 * 119.99388 * 180.02562 * 22 21 19 46 46 H 1.09002 * 110.37084 * 322.93436 * 27 7 5 47 47 H 1.09002 * 110.36380 * 85.14554 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 6 4.0723 2.8633 0.0000 6 8 3.2842 3.7852 0.0013 7 7 5.3974 3.1097 -0.0009 8 6 6.0214 4.4408 -0.0064 9 6 7.5501 4.2301 0.0242 10 1 7.9625 4.2789 -0.9835 11 6 8.2270 5.2570 0.9344 12 6 7.6943 2.7998 0.6079 13 1 7.6373 2.8144 1.6962 14 7 8.9389 2.1719 0.1576 15 6 9.4386 1.1123 0.8238 16 8 8.8575 0.6781 1.7959 17 6 10.7186 0.4660 0.3603 18 16 11.1251 -0.9191 1.4523 19 6 12.6190 -1.4735 0.7002 20 1 13.0035 -0.9682 -0.1735 21 6 13.3020 -2.5588 1.2311 22 7 14.4183 -2.9727 0.6695 23 14 12.6372 -3.4322 2.7426 24 1 11.7272 -4.5274 2.3213 25 1 13.7661 -3.9993 3.5231 26 1 11.8899 -2.4642 3.5850 27 6 6.4610 2.0889 -0.0031 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5137 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.6765 1.9564 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 3.9337 0.9286 0.8891 36 1 3.9330 0.9289 -0.8908 37 1 5.7375 4.9797 -0.9103 38 1 5.7085 5.0005 0.8751 39 1 9.2868 5.0191 1.0253 40 1 8.1136 6.2528 0.5059 41 1 7.7628 5.2306 1.9201 42 1 9.4035 2.5189 -0.6201 43 1 10.5929 0.1008 -0.6590 44 1 11.5256 1.1982 0.3870 45 1 14.8954 -3.7314 1.0403 46 1 6.1708 1.2371 0.6120 47 1 6.6739 1.7651 -1.0220 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071617826.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:14:46 Heat of formation + Delta-G solvation = -96.281316 kcal Electronic energy + Delta-G solvation = -25384.796563 eV Core-core repulsion = 21692.805150 eV Total energy + Delta-G solvation = -3691.991413 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.69639 -39.40714 -37.90244 -35.60581 -34.31872 -32.97537 -32.48520 -30.80463 -30.17652 -28.07916 -27.13691 -25.66360 -24.62894 -23.18586 -21.42228 -20.96520 -20.43718 -19.48780 -17.92827 -17.37374 -17.01396 -16.45754 -16.09603 -15.92474 -15.21665 -15.06362 -14.96036 -14.47420 -14.09358 -14.03844 -13.83625 -13.71545 -13.60999 -13.39569 -12.99367 -12.84161 -12.71803 -12.50153 -12.46554 -12.21952 -11.67155 -11.63395 -11.55469 -11.43121 -11.31200 -11.28526 -11.05675 -11.04796 -10.86432 -10.65951 -10.11306 -9.90865 -9.67118 -9.26105 -9.04889 -8.92531 -8.56749 -6.97971 -6.33538 -4.06026 2.37372 2.48706 2.74951 2.81264 3.22794 3.29480 3.46079 3.56190 3.94259 4.19121 4.28438 4.36792 4.44123 4.54879 4.64199 4.65752 4.79432 4.89548 4.91314 4.98965 5.01304 5.05573 5.19190 5.20055 5.24494 5.32880 5.37246 5.43736 5.51119 5.52301 5.54091 5.59678 5.66238 5.67287 5.73113 5.82190 5.88345 5.92718 5.93690 5.96260 6.08256 6.36334 7.16838 7.43617 7.88810 7.89418 8.32942 8.36895 9.12461 10.75625 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.012337 B = 0.002549 C = 0.002181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2269.029400 B =10981.410698 C =12837.463031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.127 4.127 3 C -0.104 4.104 4 C -0.139 4.139 5 C 0.530 3.470 6 O -0.542 6.542 7 N -0.620 5.620 8 C 0.114 3.886 9 C -0.110 4.110 10 H 0.092 0.908 11 C -0.143 4.143 12 C 0.142 3.858 13 H 0.106 0.894 14 N -0.726 5.726 15 C 0.533 3.467 16 O -0.515 6.515 17 C -0.125 4.125 18 S -0.141 6.141 19 C -0.522 4.522 20 H 0.088 0.912 21 C 0.095 3.905 22 N -0.879 5.879 23 Si 0.857 3.143 24 H -0.267 1.267 25 H -0.274 1.274 26 H -0.235 1.235 27 C 0.086 3.914 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.096 0.904 36 H 0.093 0.907 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.066 0.934 40 H 0.062 0.938 41 H 0.061 0.939 42 H 0.403 0.597 43 H 0.098 0.902 44 H 0.098 0.902 45 H 0.271 0.729 46 H 0.087 0.913 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.814 13.522 -3.998 24.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.164 4.164 3 C -0.142 4.142 4 C -0.179 4.179 5 C 0.320 3.680 6 O -0.420 6.420 7 N -0.355 5.355 8 C -0.009 4.009 9 C -0.130 4.130 10 H 0.110 0.890 11 C -0.200 4.200 12 C 0.035 3.965 13 H 0.124 0.876 14 N -0.381 5.381 15 C 0.319 3.681 16 O -0.389 6.389 17 C -0.275 4.275 18 S 0.086 5.914 19 C -0.670 4.670 20 H 0.106 0.894 21 C -0.113 4.113 22 N -0.516 5.516 23 Si 0.682 3.318 24 H -0.192 1.192 25 H -0.199 1.199 26 H -0.159 1.159 27 C -0.039 4.039 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.114 0.886 36 H 0.112 0.888 37 H 0.089 0.911 38 H 0.091 0.909 39 H 0.085 0.915 40 H 0.081 0.919 41 H 0.080 0.920 42 H 0.238 0.762 43 H 0.116 0.884 44 H 0.117 0.883 45 H 0.081 0.919 46 H 0.105 0.895 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -21.134 13.139 -2.363 24.998 hybrid contribution 1.071 0.050 -1.057 1.505 sum -20.063 13.189 -3.420 24.252 Atomic orbital electron populations 1.21756 0.95687 1.01592 1.01915 1.21557 0.96134 0.96471 1.02265 1.21379 0.92512 0.96774 1.03494 1.21721 0.98086 0.93337 1.04722 1.20495 0.80066 0.91996 0.75445 1.90701 1.54265 1.46829 1.50161 1.48443 1.05238 1.07907 1.73865 1.21986 0.91089 0.85204 1.02648 1.22517 0.94750 0.94727 1.00962 0.88999 1.21764 1.01103 0.98001 0.99161 1.22032 0.83314 0.90705 1.00443 0.87632 1.45859 1.25224 1.33432 1.33541 1.20357 0.85927 0.79115 0.82666 1.90714 1.60409 1.61767 1.25993 1.23281 0.96750 1.02643 1.04867 1.84804 1.32366 1.34563 1.39705 1.22302 1.07687 1.19417 1.17575 0.89360 1.24720 0.93940 0.95690 0.96990 1.69938 1.15483 1.25919 1.40232 0.86734 0.79700 0.81766 0.83641 1.19199 1.19927 1.15924 1.22815 0.87224 0.92016 1.01835 0.92732 0.92713 0.92693 0.91882 0.91783 0.91302 0.91228 0.88621 0.88825 0.91065 0.90887 0.91486 0.91912 0.92018 0.76247 0.88372 0.88344 0.91901 0.89473 0.90649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.91 37.16 0.37 -0.65 16 2 C -0.13 -0.91 5.93 -26.73 -0.16 -1.07 16 3 C -0.10 -0.89 4.50 -26.73 -0.12 -1.01 16 4 C -0.14 -1.19 4.71 -27.89 -0.13 -1.33 16 5 C 0.53 5.99 7.85 -10.99 -0.09 5.90 16 6 O -0.54 -7.89 16.31 5.55 0.09 -7.79 16 7 N -0.62 -6.12 3.33 -170.51 -0.57 -6.69 16 8 C 0.11 0.97 6.48 -3.06 -0.02 0.95 16 9 C -0.11 -0.77 3.15 -88.77 -0.28 -1.05 16 10 H 0.09 0.52 8.00 -51.93 -0.42 0.11 16 11 C -0.14 -0.93 9.17 37.16 0.34 -0.59 16 12 C 0.14 1.34 2.76 -65.78 -0.18 1.16 16 13 H 0.11 1.21 7.64 -51.93 -0.40 0.82 16 14 N -0.73 -7.52 5.23 -51.73 -0.27 -7.79 16 15 C 0.53 8.27 7.85 -10.99 -0.09 8.18 16 16 O -0.52 -9.94 15.61 5.55 0.09 -9.86 16 17 C -0.12 -2.19 6.16 36.00 0.22 -1.97 16 18 S -0.14 -3.39 18.55 -107.50 -1.99 -5.38 16 19 C -0.52 -14.55 10.04 30.94 0.31 -14.24 16 20 H 0.09 2.56 8.03 -52.48 -0.42 2.14 16 21 C 0.10 2.72 5.50 -17.43 -0.10 2.63 16 22 N -0.88 -25.98 13.97 55.49 0.78 -25.21 16 23 Si 0.86 21.23 27.74 -169.99 -4.72 16.52 16 24 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 25 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 26 H -0.24 -5.80 6.74 56.52 0.38 -5.42 16 27 C 0.09 0.80 6.38 -2.53 -0.02 0.78 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.07 0.64 8.10 -51.93 -0.42 0.22 16 34 H 0.07 0.66 8.10 -51.93 -0.42 0.24 16 35 H 0.10 0.76 7.85 -51.93 -0.41 0.35 16 36 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.07 0.66 7.78 -51.93 -0.40 0.25 16 39 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.06 0.43 8.08 -51.93 -0.42 0.01 16 42 H 0.40 3.04 8.52 -40.82 -0.35 2.70 16 43 H 0.10 1.59 8.14 -51.91 -0.42 1.17 16 44 H 0.10 1.61 8.14 -51.91 -0.42 1.19 16 45 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 46 H 0.09 0.88 7.48 -51.93 -0.39 0.50 16 47 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 397.66 15.07 5.99 5.99 Total: -1.00 -34.21 397.66 -8.81 -43.02 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: -8.27 Total: -0.49 kcal Atomic # 6 Polarization: -2.37 SS G_CDS: 0.07 Total: -2.31 kcal Atomic # 7 Polarization: -39.63 SS G_CDS: -0.06 Total: -39.69 kcal Atomic # 8 Polarization: -17.83 SS G_CDS: 0.18 Total: -17.65 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -4.72 Total: 16.52 kcal Atomic # 16 Polarization: -3.39 SS G_CDS: -1.99 Total: -5.38 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -34.21 -8.81 -43.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071617826.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.264 kcal (2) G-P(sol) polarization free energy of solvation -34.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds