Wall clock time and date at job start Tue Mar 31 2020 16:14:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46886 * 2 1 4 4 C 1.52997 * 109.47060 * 180.02562 * 3 2 1 5 5 C 1.50697 * 109.47466 * 180.02562 * 4 3 2 6 6 O 1.21288 * 120.00038 * 0.02562 * 5 4 3 7 7 N 1.34777 * 120.00369 * 180.02562 * 5 4 3 8 8 C 1.47019 * 125.64846 * 179.71752 * 7 5 4 9 9 C 1.54341 * 107.26297 * 178.84906 * 8 7 5 10 10 H 1.08994 * 110.51140 * 96.45472 * 9 8 7 11 11 C 1.53007 * 110.99964 * 219.60162 * 9 8 7 12 12 C 1.55154 * 103.02206 * 338.13870 * 9 8 7 13 13 H 1.08991 * 111.00734 * 277.23586 * 12 9 8 14 14 N 1.46500 * 111.00362 * 153.38079 * 12 9 8 15 15 C 1.34772 * 120.00094 * 161.35194 * 14 12 9 16 16 O 1.21284 * 120.00224 * 0.02562 * 15 14 12 17 17 C 1.50697 * 120.00201 * 179.97438 * 15 14 12 18 18 S 1.81000 * 109.47369 * 179.97438 * 17 15 14 19 19 C 1.76204 * 100.00212 * 179.97438 * 18 17 15 20 20 H 1.08007 * 119.99654 * 0.02562 * 19 18 17 21 21 C 1.38794 * 120.00025 * 179.97438 * 19 18 17 22 22 N 1.31632 * 119.99710 * 180.02562 * 21 19 18 23 23 Si 1.86798 * 119.99997 * 0.02562 * 21 19 18 24 24 H 1.48493 * 109.47471 * 89.99647 * 23 21 19 25 25 H 1.48499 * 109.46944 * 209.99629 * 23 21 19 26 26 H 1.48500 * 109.47005 * 329.99278 * 23 21 19 27 27 C 1.47423 * 125.64803 * 0.02562 * 7 5 4 28 28 H 1.09002 * 109.47508 * 59.99571 * 1 2 3 29 29 H 1.09000 * 109.47437 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47109 * 299.99380 * 1 2 3 31 31 H 1.09001 * 109.46652 * 240.00345 * 2 1 3 32 32 H 1.08992 * 109.47514 * 120.00434 * 2 1 3 33 33 H 1.09002 * 109.47398 * 300.00496 * 3 2 1 34 34 H 1.09001 * 109.47194 * 60.00677 * 3 2 1 35 35 H 1.09002 * 109.47153 * 300.00319 * 4 3 2 36 36 H 1.08998 * 109.47533 * 59.99948 * 4 3 2 37 37 H 1.09000 * 109.88251 * 298.39485 * 8 7 5 38 38 H 1.09004 * 109.88041 * 59.56299 * 8 7 5 39 39 H 1.08999 * 109.46996 * 173.78316 * 11 9 8 40 40 H 1.08998 * 109.46838 * 293.78023 * 11 9 8 41 41 H 1.08994 * 109.46825 * 53.78166 * 11 9 8 42 42 H 0.97007 * 119.99867 * 341.35181 * 14 12 9 43 43 H 1.09005 * 109.47361 * 300.00224 * 17 15 14 44 44 H 1.09001 * 109.47089 * 60.00035 * 17 15 14 45 45 H 0.96999 * 119.99388 * 180.02562 * 22 21 19 46 46 H 1.09002 * 110.37084 * 322.93436 * 27 7 5 47 47 H 1.09002 * 110.36380 * 85.14554 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 6 4.0723 2.8633 0.0000 6 8 3.2842 3.7852 0.0013 7 7 5.3974 3.1097 -0.0009 8 6 6.0214 4.4408 -0.0064 9 6 7.5501 4.2301 0.0242 10 1 7.9625 4.2789 -0.9835 11 6 8.2270 5.2570 0.9344 12 6 7.6943 2.7998 0.6079 13 1 7.6373 2.8144 1.6962 14 7 8.9389 2.1719 0.1576 15 6 9.4386 1.1123 0.8238 16 8 8.8575 0.6781 1.7959 17 6 10.7186 0.4660 0.3603 18 16 11.1251 -0.9191 1.4523 19 6 12.6190 -1.4735 0.7002 20 1 13.0035 -0.9682 -0.1735 21 6 13.3020 -2.5588 1.2311 22 7 14.4183 -2.9727 0.6695 23 14 12.6372 -3.4322 2.7426 24 1 11.7272 -4.5274 2.3213 25 1 13.7661 -3.9993 3.5231 26 1 11.8899 -2.4642 3.5850 27 6 6.4610 2.0889 -0.0031 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5137 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.6765 1.9564 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 3.9337 0.9286 0.8891 36 1 3.9330 0.9289 -0.8908 37 1 5.7375 4.9797 -0.9103 38 1 5.7085 5.0005 0.8751 39 1 9.2868 5.0191 1.0253 40 1 8.1136 6.2528 0.5059 41 1 7.7628 5.2306 1.9201 42 1 9.4035 2.5189 -0.6201 43 1 10.5929 0.1008 -0.6590 44 1 11.5256 1.1982 0.3870 45 1 14.8954 -3.7314 1.0403 46 1 6.1708 1.2371 0.6120 47 1 6.6739 1.7651 -1.0220 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071617826.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:14:45 Heat of formation + Delta-G solvation = -118.746736 kcal Electronic energy + Delta-G solvation = -25385.770736 eV Core-core repulsion = 21692.805150 eV Total energy + Delta-G solvation = -3692.965587 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.56324 -40.50531 -38.84295 -36.27732 -35.33982 -34.64671 -33.75776 -31.49769 -31.31962 -29.10467 -27.81988 -27.78064 -25.29154 -24.02940 -22.04922 -21.82323 -21.44935 -20.29262 -19.81581 -18.25041 -18.00487 -17.55974 -17.10698 -16.89133 -16.87327 -16.35729 -15.99417 -15.63466 -15.16425 -14.87295 -14.79217 -14.61675 -14.54374 -14.51328 -14.31057 -13.72517 -13.62236 -13.39545 -13.31852 -13.20187 -13.08706 -12.99210 -12.64248 -12.37328 -12.26258 -12.18826 -12.07947 -11.89674 -11.85270 -11.69824 -11.48727 -11.14994 -11.04489 -10.95765 -10.49851 -10.24540 -9.76143 -8.96014 -8.49418 -6.19406 1.01030 1.33171 1.47117 1.50537 1.55946 1.56595 1.81653 2.25344 2.29375 2.73882 2.89148 3.21956 3.44403 3.64145 3.79423 3.87823 3.90184 3.99810 4.12374 4.18616 4.29180 4.29613 4.39323 4.43254 4.52922 4.55343 4.60839 4.68744 4.70961 4.75809 4.84281 4.90220 4.95616 4.96728 5.06845 5.09095 5.15704 5.27047 5.33687 5.35160 5.44784 5.46988 5.72931 6.14302 6.34746 6.46305 6.96188 7.03598 7.19370 8.62786 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.012337 B = 0.002549 C = 0.002181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2269.029400 B =10981.410698 C =12837.463031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.123 4.123 3 C -0.099 4.099 4 C -0.135 4.135 5 C 0.524 3.476 6 O -0.581 6.581 7 N -0.618 5.618 8 C 0.109 3.891 9 C -0.093 4.093 10 H 0.117 0.883 11 C -0.142 4.142 12 C 0.140 3.860 13 H 0.086 0.914 14 N -0.698 5.698 15 C 0.541 3.459 16 O -0.556 6.556 17 C -0.112 4.112 18 S -0.176 6.176 19 C -0.527 4.527 20 H 0.063 0.937 21 C 0.044 3.956 22 N -0.918 5.918 23 Si 0.914 3.086 24 H -0.262 1.262 25 H -0.263 1.263 26 H -0.235 1.235 27 C 0.089 3.911 28 H 0.054 0.946 29 H 0.062 0.938 30 H 0.051 0.949 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.059 0.941 34 H 0.054 0.946 35 H 0.103 0.897 36 H 0.111 0.889 37 H 0.077 0.923 38 H 0.065 0.935 39 H 0.066 0.934 40 H 0.077 0.923 41 H 0.052 0.948 42 H 0.421 0.579 43 H 0.117 0.883 44 H 0.115 0.885 45 H 0.276 0.724 46 H 0.079 0.921 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.427 14.124 -4.610 25.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.161 4.161 3 C -0.138 4.138 4 C -0.174 4.174 5 C 0.315 3.685 6 O -0.462 6.462 7 N -0.352 5.352 8 C -0.013 4.013 9 C -0.112 4.112 10 H 0.135 0.865 11 C -0.199 4.199 12 C 0.034 3.966 13 H 0.104 0.896 14 N -0.352 5.352 15 C 0.327 3.673 16 O -0.434 6.434 17 C -0.263 4.263 18 S 0.051 5.949 19 C -0.674 4.674 20 H 0.082 0.918 21 C -0.161 4.161 22 N -0.556 5.556 23 Si 0.736 3.264 24 H -0.187 1.187 25 H -0.187 1.187 26 H -0.159 1.159 27 C -0.035 4.035 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.070 0.930 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.077 0.923 34 H 0.073 0.927 35 H 0.121 0.879 36 H 0.129 0.871 37 H 0.095 0.905 38 H 0.083 0.917 39 H 0.085 0.915 40 H 0.096 0.904 41 H 0.071 0.929 42 H 0.260 0.740 43 H 0.135 0.865 44 H 0.133 0.867 45 H 0.085 0.915 46 H 0.097 0.903 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -21.726 13.775 -3.013 25.901 hybrid contribution 1.228 0.017 -0.964 1.561 sum -20.498 13.791 -3.977 25.024 Atomic orbital electron populations 1.21772 0.95427 1.02087 1.01804 1.21540 0.96388 0.95404 1.02765 1.21322 0.92629 0.97506 1.02295 1.21754 0.97958 0.91883 1.05841 1.20962 0.80195 0.92612 0.74750 1.90680 1.55236 1.48110 1.52145 1.48491 1.05079 1.08674 1.72950 1.22109 0.91940 0.84670 1.02627 1.22470 0.93703 0.92854 1.02151 0.86516 1.21769 1.00772 0.98679 0.98729 1.22054 0.82683 0.92281 0.99614 0.89581 1.45520 1.25143 1.31448 1.33115 1.19934 0.85057 0.79937 0.82401 1.90714 1.61351 1.63369 1.27937 1.23274 0.98577 1.00417 1.04018 1.84728 1.30279 1.37987 1.41922 1.22473 1.09075 1.19106 1.16777 0.91845 1.25570 0.94255 0.96599 0.99725 1.70021 1.16787 1.26857 1.41918 0.85872 0.79399 0.80653 0.80487 1.18719 1.18721 1.15907 1.22803 0.86714 0.91493 1.02532 0.92723 0.91889 0.92996 0.91068 0.91516 0.92259 0.92713 0.87868 0.87075 0.90477 0.91659 0.91519 0.90363 0.92936 0.74042 0.86523 0.86717 0.91467 0.90300 0.88996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 9.91 71.98 0.71 -1.22 16 2 C -0.12 -1.63 5.93 30.59 0.18 -1.45 16 3 C -0.10 -1.67 4.50 30.59 0.14 -1.53 16 4 C -0.13 -2.17 4.71 29.85 0.14 -2.03 16 5 C 0.52 11.45 7.85 87.66 0.69 12.14 16 6 O -0.58 -16.96 16.31 -3.05 -0.05 -17.01 16 7 N -0.62 -11.28 3.33 -811.75 -2.70 -13.98 16 8 C 0.11 1.66 6.48 86.74 0.56 2.22 16 9 C -0.09 -1.02 3.15 -9.60 -0.03 -1.05 16 10 H 0.12 0.80 8.00 -2.39 -0.02 0.78 16 11 C -0.14 -1.49 9.17 71.98 0.66 -0.83 16 12 C 0.14 2.32 2.76 46.38 0.13 2.45 16 13 H 0.09 1.87 7.64 -2.39 -0.02 1.85 16 14 N -0.70 -12.32 5.23 -435.98 -2.28 -14.60 16 15 C 0.54 15.59 7.85 87.66 0.69 16.28 16 16 O -0.56 -20.80 15.61 -3.04 -0.05 -20.85 16 17 C -0.11 -3.70 6.16 71.24 0.44 -3.27 16 18 S -0.18 -8.33 18.55 -56.49 -1.05 -9.37 16 19 C -0.53 -29.42 10.04 67.95 0.68 -28.74 16 20 H 0.06 3.73 8.03 -2.91 -0.02 3.71 16 21 C 0.04 2.50 5.50 84.86 0.47 2.97 16 22 N -0.92 -54.69 13.97 21.65 0.30 -54.39 16 23 Si 0.91 43.74 27.74 68.60 1.90 45.64 16 24 H -0.26 -12.25 7.11 99.48 0.71 -11.55 16 25 H -0.26 -11.91 7.11 99.48 0.71 -11.20 16 26 H -0.24 -11.17 6.74 99.48 0.67 -10.50 16 27 C 0.09 1.45 6.38 86.86 0.55 2.01 16 28 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.06 0.68 8.14 -2.39 -0.02 0.67 16 30 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.07 0.83 8.14 -2.39 -0.02 0.82 16 32 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.06 1.10 8.10 -2.39 -0.02 1.08 16 34 H 0.05 1.07 8.10 -2.39 -0.02 1.05 16 35 H 0.10 1.52 7.85 -2.39 -0.02 1.50 16 36 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.07 1.11 7.78 -2.39 -0.02 1.09 16 39 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 40 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 41 H 0.05 0.66 8.08 -2.39 -0.02 0.64 16 42 H 0.42 4.60 8.52 -92.70 -0.79 3.81 16 43 H 0.12 3.47 8.14 -2.39 -0.02 3.45 16 44 H 0.11 3.46 8.14 -2.40 -0.02 3.44 16 45 H 0.28 15.25 8.31 -92.71 -0.77 14.48 16 46 H 0.08 1.47 7.48 -2.39 -0.02 1.45 16 47 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -75.10 397.66 2.21 -72.89 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: 0.12 Total: 13.73 kcal Atomic # 6 Polarization: -8.07 SS G_CDS: 6.01 Total: -2.05 kcal Atomic # 7 Polarization: -78.29 SS G_CDS: -4.68 Total: -82.97 kcal Atomic # 8 Polarization: -37.77 SS G_CDS: -0.10 Total: -37.87 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 1.90 Total: 45.64 kcal Atomic # 16 Polarization: -8.33 SS G_CDS: -1.05 Total: -9.37 kcal Total: -75.10 2.21 -72.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071617826.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.854 kcal (2) G-P(sol) polarization free energy of solvation -75.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds