Wall clock time and date at job start Tue Mar 31 2020 16:19:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47220 * 2 1 4 4 C 1.53001 * 109.47220 * 180.02562 * 3 2 1 5 5 C 1.50700 * 109.47407 * 179.97438 * 4 3 2 6 6 O 1.21281 * 119.99878 * 0.02562 * 5 4 3 7 7 N 1.34769 * 119.99938 * 179.97438 * 5 4 3 8 8 C 1.46508 * 119.99941 * 180.02562 * 7 5 4 9 9 H 1.09000 * 110.88201 * 322.57647 * 8 7 5 10 10 C 1.54907 * 111.00214 * 86.45493 * 8 7 5 11 11 N 1.47420 * 104.83524 * 81.10542 * 10 8 7 12 12 C 1.34775 * 125.65051 * 204.16394 * 11 10 8 13 13 O 1.21288 * 120.00108 * 179.97438 * 12 11 10 14 14 C 1.50701 * 119.99876 * 359.95496 * 12 11 10 15 15 S 1.81000 * 109.46890 * 180.02562 * 14 12 11 16 16 C 1.76207 * 99.99970 * 180.02562 * 15 14 12 17 17 H 1.07998 * 119.99851 * 0.02562 * 16 15 14 18 18 C 1.38799 * 120.00001 * 179.97438 * 16 15 14 19 19 N 1.31631 * 119.99845 * 180.02562 * 18 16 15 20 20 Si 1.86795 * 120.00109 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.47243 * 89.99865 * 20 18 16 22 22 H 1.48503 * 109.47204 * 210.00003 * 20 18 16 23 23 H 1.48507 * 109.47070 * 329.99776 * 20 18 16 24 24 C 1.47026 * 108.70428 * 24.12518 * 11 10 8 25 25 C 1.54330 * 107.26840 * 358.94103 * 24 11 10 26 26 H 1.08998 * 110.71700 * 96.16950 * 25 24 11 27 27 C 1.52994 * 110.71826 * 219.44364 * 25 24 11 28 28 H 1.09003 * 109.46953 * 300.00465 * 1 2 3 29 29 H 1.09002 * 109.46889 * 60.00158 * 1 2 3 30 30 H 1.08991 * 109.46981 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47210 * 239.99980 * 2 1 3 32 32 H 1.09002 * 109.46889 * 119.99842 * 2 1 3 33 33 H 1.08999 * 109.47045 * 59.99880 * 3 2 1 34 34 H 1.09002 * 109.47060 * 299.99737 * 3 2 1 35 35 H 1.09003 * 109.46953 * 59.99535 * 4 3 2 36 36 H 1.08999 * 109.47285 * 300.00152 * 4 3 2 37 37 H 0.97001 * 120.00721 * 0.02562 * 7 5 4 38 38 H 1.08997 * 110.36783 * 322.26262 * 10 8 7 39 39 H 1.08997 * 110.45914 * 199.98913 * 10 8 7 40 40 H 1.08994 * 109.47206 * 300.00066 * 14 12 11 41 41 H 1.09001 * 109.47013 * 60.00447 * 14 12 11 42 42 H 0.96998 * 119.99828 * 179.97438 * 19 18 16 43 43 H 1.08998 * 109.88351 * 118.35702 * 24 11 10 44 44 H 1.08998 * 109.88379 * 239.52492 * 24 11 10 45 45 H 1.08994 * 109.47458 * 58.54762 * 27 25 24 46 46 H 1.09010 * 109.46817 * 178.55144 * 27 25 24 47 47 H 1.09000 * 109.47214 * 298.54123 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0724 2.8633 -0.0013 6 8 3.2844 3.7851 -0.0008 7 7 5.3975 3.1095 -0.0014 8 6 5.8859 4.4907 -0.0014 9 1 5.2528 5.1267 -0.6203 10 6 5.9868 5.0440 1.4419 11 7 7.2631 4.5180 1.9594 12 6 7.5690 4.3379 3.2596 13 8 8.6545 3.8959 3.5715 14 6 6.5624 4.6860 4.3257 15 16 7.2651 4.3351 5.9564 16 6 5.9161 4.8191 6.9815 17 1 5.0076 5.1965 6.5359 18 6 6.0207 4.7144 8.3616 19 7 5.0128 5.0756 9.1273 20 14 7.5918 4.0610 9.1323 21 1 8.5202 5.1896 9.3964 22 1 7.2689 3.3762 10.4098 23 1 8.2354 3.0977 8.2032 24 6 8.1466 4.2216 0.8223 25 6 7.3650 4.5584 -0.4651 26 1 7.6135 5.5599 -0.8163 27 6 7.6395 3.5181 -1.5528 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 3.9330 0.9287 -0.8908 36 1 3.9338 0.9285 0.8891 37 1 6.0278 2.3722 -0.0014 38 1 5.1546 4.6823 2.0459 39 1 6.0018 6.1338 1.4320 40 1 6.3131 5.7449 4.2582 41 1 5.6608 4.0905 4.1825 42 1 5.0858 5.0021 10.0917 43 1 9.0455 4.8353 0.8814 44 1 8.4154 3.1653 0.8271 45 1 7.3544 2.5302 -1.1910 46 1 7.0585 3.7608 -2.4427 47 1 8.7011 3.5221 -1.7999 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071655481.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:19:36 Heat of formation + Delta-G solvation = -91.655432 kcal Electronic energy + Delta-G solvation = -25916.474105 eV Core-core repulsion = 22224.683285 eV Total energy + Delta-G solvation = -3691.790819 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.75175 -39.37908 -37.71374 -35.58083 -34.19641 -32.80738 -32.43424 -30.93442 -29.62732 -28.97575 -26.25787 -25.56386 -25.11668 -23.08733 -21.56611 -20.77399 -20.30063 -19.42455 -17.74927 -17.37758 -16.92653 -16.55969 -16.23703 -15.71672 -15.14644 -14.96773 -14.72444 -14.59735 -14.21761 -13.95874 -13.94078 -13.73952 -13.39331 -13.11656 -12.88343 -12.81756 -12.60496 -12.52727 -12.45884 -12.07516 -11.68138 -11.59255 -11.50331 -11.36136 -11.25978 -11.24775 -11.11172 -11.00881 -10.83954 -10.60602 -10.04076 -9.86170 -9.64053 -9.38466 -9.00177 -8.58697 -8.50421 -6.92513 -6.28332 -4.00473 2.42021 2.66515 2.84775 2.92866 3.18065 3.33070 3.49990 3.59108 3.95722 4.22209 4.33147 4.43884 4.44982 4.55651 4.67130 4.67744 4.87365 4.92996 4.96370 5.02297 5.10419 5.11510 5.18562 5.20497 5.27153 5.33963 5.37564 5.50186 5.54135 5.55178 5.58502 5.62653 5.66672 5.68210 5.77384 5.83864 5.89221 5.99715 6.01905 6.10742 6.20112 6.29941 7.20953 7.51528 7.94780 7.98760 8.40133 8.42900 9.17566 10.80953 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.009495 B = 0.003283 C = 0.002600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2948.315351 B = 8526.623878 C =10765.836403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C -0.105 4.105 4 C -0.142 4.142 5 C 0.514 3.486 6 O -0.537 6.537 7 N -0.721 5.721 8 C 0.137 3.863 9 H 0.110 0.890 10 C 0.088 3.912 11 N -0.623 5.623 12 C 0.548 3.452 13 O -0.518 6.518 14 C -0.117 4.117 15 S -0.142 6.142 16 C -0.521 4.521 17 H 0.088 0.912 18 C 0.096 3.904 19 N -0.880 5.880 20 Si 0.857 3.143 21 H -0.267 1.267 22 H -0.274 1.274 23 H -0.235 1.235 24 C 0.111 3.889 25 C -0.110 4.110 26 H 0.101 0.899 27 C -0.140 4.140 28 H 0.056 0.944 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.060 0.940 32 H 0.063 0.937 33 H 0.072 0.928 34 H 0.068 0.932 35 H 0.092 0.908 36 H 0.095 0.905 37 H 0.402 0.598 38 H 0.084 0.916 39 H 0.080 0.920 40 H 0.096 0.904 41 H 0.095 0.905 42 H 0.271 0.729 43 H 0.070 0.930 44 H 0.068 0.932 45 H 0.057 0.943 46 H 0.063 0.937 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.200 -7.000 -26.096 27.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.163 4.163 3 C -0.143 4.143 4 C -0.182 4.182 5 C 0.301 3.699 6 O -0.413 6.413 7 N -0.374 5.374 8 C 0.031 3.969 9 H 0.128 0.872 10 C -0.036 4.036 11 N -0.361 5.361 12 C 0.336 3.664 13 O -0.392 6.392 14 C -0.268 4.268 15 S 0.084 5.916 16 C -0.668 4.668 17 H 0.106 0.894 18 C -0.113 4.113 19 N -0.516 5.516 20 Si 0.682 3.318 21 H -0.192 1.192 22 H -0.199 1.199 23 H -0.159 1.159 24 C -0.012 4.012 25 C -0.130 4.130 26 H 0.119 0.881 27 C -0.198 4.198 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.090 0.910 34 H 0.087 0.913 35 H 0.110 0.890 36 H 0.113 0.887 37 H 0.238 0.762 38 H 0.102 0.898 39 H 0.099 0.901 40 H 0.114 0.886 41 H 0.113 0.887 42 H 0.081 0.919 43 H 0.088 0.912 44 H 0.086 0.914 45 H 0.076 0.924 46 H 0.082 0.918 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -0.219 -6.983 -25.343 26.289 hybrid contribution -0.439 0.059 0.296 0.533 sum -0.658 -6.924 -25.047 25.995 Atomic orbital electron populations 1.21761 0.95663 1.01549 1.02083 1.21549 0.96226 0.96540 1.01986 1.21379 0.92473 0.96731 1.03726 1.21721 0.98411 0.93602 1.04474 1.20805 0.81870 0.91977 0.75208 1.90722 1.55189 1.46504 1.48872 1.46024 1.07283 1.08231 1.75850 1.22056 0.94954 0.83989 0.95929 0.87207 1.22783 0.86975 0.99123 0.94736 1.48444 1.16372 1.66259 1.04976 1.19984 0.88129 0.77127 0.81122 1.90707 1.23779 1.44009 1.80745 1.23252 1.00718 1.05119 0.97696 1.84747 1.25418 1.85840 0.95565 1.22306 1.01223 1.49875 0.93417 0.89395 1.24710 0.96701 0.93826 0.96048 1.69941 1.30778 1.45797 1.05120 0.86736 0.83640 0.81097 0.80376 1.19199 1.19918 1.15945 1.21972 0.93688 1.01289 0.84268 1.22558 0.93573 1.01668 0.95167 0.88103 1.21707 1.02298 0.98020 0.97764 0.92486 0.92750 0.92795 0.92127 0.91824 0.90958 0.91289 0.89003 0.88664 0.76237 0.89751 0.90145 0.88598 0.88702 0.91935 0.91161 0.91410 0.92422 0.91762 0.91688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.91 37.16 0.37 -0.71 16 2 C -0.13 -0.88 5.93 -26.73 -0.16 -1.03 16 3 C -0.11 -0.89 4.50 -26.73 -0.12 -1.01 16 4 C -0.14 -1.05 5.70 -27.88 -0.16 -1.21 16 5 C 0.51 5.16 7.83 -10.99 -0.09 5.08 16 6 O -0.54 -7.43 15.73 5.56 0.09 -7.34 16 7 N -0.72 -5.92 4.68 -51.73 -0.24 -6.16 16 8 C 0.14 1.16 3.07 -65.78 -0.20 0.96 16 9 H 0.11 0.95 7.73 -51.93 -0.40 0.55 16 10 C 0.09 0.99 6.38 -2.53 -0.02 0.97 16 11 N -0.62 -8.40 3.33 -170.52 -0.57 -8.96 16 12 C 0.55 10.12 7.87 -10.99 -0.09 10.03 16 13 O -0.52 -11.37 16.19 5.55 0.09 -11.28 16 14 C -0.12 -2.38 5.16 36.01 0.19 -2.20 16 15 S -0.14 -3.67 18.55 -107.50 -1.99 -5.66 16 16 C -0.52 -15.23 10.04 30.94 0.31 -14.92 16 17 H 0.09 2.70 8.03 -52.49 -0.42 2.27 16 18 C 0.10 2.83 5.50 -17.43 -0.10 2.74 16 19 N -0.88 -26.81 13.97 55.49 0.78 -26.04 16 20 Si 0.86 21.95 27.74 -169.99 -4.71 17.23 16 21 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 23 H -0.24 -6.01 6.74 56.52 0.38 -5.63 16 24 C 0.11 1.13 6.46 -3.06 -0.02 1.12 16 25 C -0.11 -0.75 3.42 -88.79 -0.30 -1.05 16 26 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 27 C -0.14 -0.70 8.80 37.15 0.33 -0.37 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.75 8.10 -51.93 -0.42 0.33 16 34 H 0.07 0.62 8.10 -51.93 -0.42 0.20 16 35 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.40 2.63 6.82 -40.82 -0.28 2.36 16 38 H 0.08 1.10 7.48 -51.93 -0.39 0.71 16 39 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.10 1.85 8.14 -51.92 -0.42 1.43 16 41 H 0.09 1.85 7.85 -51.92 -0.41 1.44 16 42 H 0.27 7.65 8.31 -40.82 -0.34 7.31 16 43 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.07 0.70 7.82 -51.93 -0.41 0.29 16 45 H 0.06 0.27 6.21 -51.93 -0.32 -0.05 16 46 H 0.06 0.30 8.14 -51.92 -0.42 -0.13 16 47 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 LS Contribution 394.00 15.07 5.94 5.94 Total: -1.00 -35.83 394.00 -8.80 -44.63 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: -8.12 Total: -0.76 kcal Atomic # 6 Polarization: -1.54 SS G_CDS: -0.06 Total: -1.60 kcal Atomic # 7 Polarization: -41.13 SS G_CDS: -0.03 Total: -41.17 kcal Atomic # 8 Polarization: -18.80 SS G_CDS: 0.18 Total: -18.62 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.71 Total: 17.23 kcal Atomic # 16 Polarization: -3.67 SS G_CDS: -1.99 Total: -5.66 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -35.83 -8.80 -44.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071655481.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.023 kcal (2) G-P(sol) polarization free energy of solvation -35.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds