Wall clock time and date at job start Tue Mar 31 2020 16:19:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47220 * 2 1 4 4 C 1.53001 * 109.47220 * 180.02562 * 3 2 1 5 5 C 1.50700 * 109.47407 * 179.97438 * 4 3 2 6 6 O 1.21281 * 119.99878 * 0.02562 * 5 4 3 7 7 N 1.34769 * 119.99938 * 179.97438 * 5 4 3 8 8 C 1.46508 * 119.99941 * 180.02562 * 7 5 4 9 9 H 1.09000 * 110.88201 * 322.57647 * 8 7 5 10 10 C 1.54907 * 111.00214 * 86.45493 * 8 7 5 11 11 N 1.47420 * 104.83524 * 81.10542 * 10 8 7 12 12 C 1.34775 * 125.65051 * 204.16394 * 11 10 8 13 13 O 1.21288 * 120.00108 * 179.97438 * 12 11 10 14 14 C 1.50701 * 119.99876 * 359.95496 * 12 11 10 15 15 S 1.81000 * 109.46890 * 180.02562 * 14 12 11 16 16 C 1.76207 * 99.99970 * 180.02562 * 15 14 12 17 17 H 1.07998 * 119.99851 * 0.02562 * 16 15 14 18 18 C 1.38799 * 120.00001 * 179.97438 * 16 15 14 19 19 N 1.31631 * 119.99845 * 180.02562 * 18 16 15 20 20 Si 1.86795 * 120.00109 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.47243 * 89.99865 * 20 18 16 22 22 H 1.48503 * 109.47204 * 210.00003 * 20 18 16 23 23 H 1.48507 * 109.47070 * 329.99776 * 20 18 16 24 24 C 1.47026 * 108.70428 * 24.12518 * 11 10 8 25 25 C 1.54330 * 107.26840 * 358.94103 * 24 11 10 26 26 H 1.08998 * 110.71700 * 96.16950 * 25 24 11 27 27 C 1.52994 * 110.71826 * 219.44364 * 25 24 11 28 28 H 1.09003 * 109.46953 * 300.00465 * 1 2 3 29 29 H 1.09002 * 109.46889 * 60.00158 * 1 2 3 30 30 H 1.08991 * 109.46981 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47210 * 239.99980 * 2 1 3 32 32 H 1.09002 * 109.46889 * 119.99842 * 2 1 3 33 33 H 1.08999 * 109.47045 * 59.99880 * 3 2 1 34 34 H 1.09002 * 109.47060 * 299.99737 * 3 2 1 35 35 H 1.09003 * 109.46953 * 59.99535 * 4 3 2 36 36 H 1.08999 * 109.47285 * 300.00152 * 4 3 2 37 37 H 0.97001 * 120.00721 * 0.02562 * 7 5 4 38 38 H 1.08997 * 110.36783 * 322.26262 * 10 8 7 39 39 H 1.08997 * 110.45914 * 199.98913 * 10 8 7 40 40 H 1.08994 * 109.47206 * 300.00066 * 14 12 11 41 41 H 1.09001 * 109.47013 * 60.00447 * 14 12 11 42 42 H 0.96998 * 119.99828 * 179.97438 * 19 18 16 43 43 H 1.08998 * 109.88351 * 118.35702 * 24 11 10 44 44 H 1.08998 * 109.88379 * 239.52492 * 24 11 10 45 45 H 1.08994 * 109.47458 * 58.54762 * 27 25 24 46 46 H 1.09010 * 109.46817 * 178.55144 * 27 25 24 47 47 H 1.09000 * 109.47214 * 298.54123 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0724 2.8633 -0.0013 6 8 3.2844 3.7851 -0.0008 7 7 5.3975 3.1095 -0.0014 8 6 5.8859 4.4907 -0.0014 9 1 5.2528 5.1267 -0.6203 10 6 5.9868 5.0440 1.4419 11 7 7.2631 4.5180 1.9594 12 6 7.5690 4.3379 3.2596 13 8 8.6545 3.8959 3.5715 14 6 6.5624 4.6860 4.3257 15 16 7.2651 4.3351 5.9564 16 6 5.9161 4.8191 6.9815 17 1 5.0076 5.1965 6.5359 18 6 6.0207 4.7144 8.3616 19 7 5.0128 5.0756 9.1273 20 14 7.5918 4.0610 9.1323 21 1 8.5202 5.1896 9.3964 22 1 7.2689 3.3762 10.4098 23 1 8.2354 3.0977 8.2032 24 6 8.1466 4.2216 0.8223 25 6 7.3650 4.5584 -0.4651 26 1 7.6135 5.5599 -0.8163 27 6 7.6395 3.5181 -1.5528 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 3.9330 0.9287 -0.8908 36 1 3.9338 0.9285 0.8891 37 1 6.0278 2.3722 -0.0014 38 1 5.1546 4.6823 2.0459 39 1 6.0018 6.1338 1.4320 40 1 6.3131 5.7449 4.2582 41 1 5.6608 4.0905 4.1825 42 1 5.0858 5.0021 10.0917 43 1 9.0455 4.8353 0.8814 44 1 8.4154 3.1653 0.8271 45 1 7.3544 2.5302 -1.1910 46 1 7.0585 3.7608 -2.4427 47 1 8.7011 3.5221 -1.7999 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071655481.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:19:35 Heat of formation + Delta-G solvation = -115.593215 kcal Electronic energy + Delta-G solvation = -25917.512125 eV Core-core repulsion = 22224.683285 eV Total energy + Delta-G solvation = -3692.828840 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.67493 -40.46807 -38.83008 -36.22966 -35.18967 -34.71138 -33.62662 -31.58555 -31.05567 -29.82780 -27.94360 -27.01132 -25.82643 -23.97358 -22.22338 -21.49138 -21.03107 -20.76695 -19.62073 -18.36310 -17.97006 -17.68425 -17.16376 -16.97513 -16.84750 -16.23991 -15.77071 -15.58780 -15.55185 -15.08156 -14.92409 -14.54853 -14.51687 -14.41370 -13.86304 -13.69573 -13.59180 -13.50678 -13.35402 -13.24918 -13.15318 -13.03270 -12.73323 -12.34692 -12.19942 -12.10146 -11.95639 -11.88494 -11.85322 -11.74086 -11.45229 -11.20376 -11.11365 -10.86359 -10.61148 -10.28361 -9.70109 -9.05660 -8.54764 -6.27294 0.91238 1.29531 1.41944 1.43876 1.50656 1.64079 1.98663 2.17223 2.22396 2.62035 2.83119 3.22098 3.42828 3.66819 3.78647 3.84700 3.94077 4.05817 4.06542 4.17673 4.30130 4.34023 4.35919 4.46653 4.48990 4.57177 4.64035 4.66189 4.72594 4.77948 4.81075 4.94352 5.00722 5.04929 5.11151 5.11815 5.25938 5.28358 5.39078 5.39339 5.46682 5.52246 5.66889 6.07189 6.23466 6.51811 6.89370 6.98783 7.24915 8.58024 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.009495 B = 0.003283 C = 0.002600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2948.315351 B = 8526.623878 C =10765.836403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.121 4.121 3 C -0.104 4.104 4 C -0.137 4.137 5 C 0.510 3.490 6 O -0.581 6.581 7 N -0.711 5.711 8 C 0.141 3.859 9 H 0.116 0.884 10 C 0.080 3.920 11 N -0.610 5.610 12 C 0.550 3.450 13 O -0.558 6.558 14 C -0.105 4.105 15 S -0.164 6.164 16 C -0.533 4.533 17 H 0.057 0.943 18 C 0.046 3.954 19 N -0.917 5.917 20 Si 0.917 3.083 21 H -0.261 1.261 22 H -0.256 1.256 23 H -0.235 1.235 24 C 0.104 3.896 25 C -0.090 4.090 26 H 0.120 0.880 27 C -0.138 4.138 28 H 0.044 0.956 29 H 0.055 0.945 30 H 0.063 0.937 31 H 0.078 0.922 32 H 0.064 0.936 33 H 0.044 0.956 34 H 0.060 0.940 35 H 0.124 0.876 36 H 0.103 0.897 37 H 0.412 0.588 38 H 0.063 0.937 39 H 0.095 0.905 40 H 0.104 0.896 41 H 0.100 0.900 42 H 0.278 0.722 43 H 0.070 0.930 44 H 0.071 0.929 45 H 0.061 0.939 46 H 0.074 0.926 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.257 -8.111 -28.467 29.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.159 4.159 3 C -0.142 4.142 4 C -0.177 4.177 5 C 0.299 3.701 6 O -0.460 6.460 7 N -0.364 5.364 8 C 0.035 3.965 9 H 0.133 0.867 10 C -0.043 4.043 11 N -0.345 5.345 12 C 0.338 3.662 13 O -0.436 6.436 14 C -0.255 4.255 15 S 0.062 5.938 16 C -0.681 4.681 17 H 0.075 0.925 18 C -0.160 4.160 19 N -0.554 5.554 20 Si 0.738 3.262 21 H -0.185 1.185 22 H -0.180 1.180 23 H -0.159 1.159 24 C -0.018 4.018 25 C -0.109 4.109 26 H 0.138 0.862 27 C -0.195 4.195 28 H 0.063 0.937 29 H 0.074 0.926 30 H 0.082 0.918 31 H 0.097 0.903 32 H 0.083 0.917 33 H 0.062 0.938 34 H 0.079 0.921 35 H 0.142 0.858 36 H 0.121 0.879 37 H 0.250 0.750 38 H 0.082 0.918 39 H 0.113 0.887 40 H 0.122 0.878 41 H 0.118 0.882 42 H 0.088 0.912 43 H 0.088 0.912 44 H 0.089 0.911 45 H 0.080 0.920 46 H 0.093 0.907 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 1.233 -8.101 -27.764 28.948 hybrid contribution -0.994 0.468 0.889 1.413 sum 0.239 -7.633 -26.876 27.940 Atomic orbital electron populations 1.21792 0.95979 1.02017 1.01577 1.21529 0.95981 0.95480 1.02874 1.21329 0.93485 0.97403 1.01956 1.21755 0.97424 0.92167 1.06349 1.21297 0.82008 0.92600 0.74218 1.90708 1.56331 1.47957 1.51017 1.45988 1.07027 1.08589 1.74820 1.22045 0.96387 0.84125 0.93925 0.86658 1.23015 0.85065 1.00087 0.96156 1.48335 1.17726 1.64281 1.04110 1.19503 0.86976 0.77380 0.82387 1.90687 1.24942 1.46346 1.81665 1.23200 1.01289 1.05768 0.95292 1.84572 1.24630 1.85984 0.98599 1.22434 1.01381 1.49805 0.94431 0.92505 1.25603 0.99892 0.93954 0.96520 1.70022 1.32746 1.46810 1.05843 0.85836 0.79644 0.80729 0.79958 1.18530 1.18050 1.15929 1.22286 0.93644 1.01603 0.84258 1.22536 0.91051 1.03503 0.93846 0.86216 1.21721 1.03190 0.97435 0.97199 0.93700 0.92626 0.91810 0.90311 0.91729 0.93760 0.92115 0.85779 0.87856 0.74967 0.91802 0.88734 0.87796 0.88182 0.91246 0.91189 0.91069 0.91972 0.90734 0.90721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.11 9.91 71.98 0.71 -1.40 16 2 C -0.12 -1.53 5.93 30.59 0.18 -1.35 16 3 C -0.10 -1.71 4.50 30.59 0.14 -1.57 16 4 C -0.14 -1.79 5.70 29.85 0.17 -1.62 16 5 C 0.51 9.63 7.83 87.66 0.69 10.32 16 6 O -0.58 -16.05 15.73 -3.03 -0.05 -16.10 16 7 N -0.71 -10.16 4.68 -435.96 -2.04 -12.20 16 8 C 0.14 2.08 3.07 46.38 0.14 2.23 16 9 H 0.12 1.72 7.73 -2.39 -0.02 1.70 16 10 C 0.08 1.70 6.38 86.86 0.55 2.26 16 11 N -0.61 -15.59 3.33 -811.79 -2.70 -18.30 16 12 C 0.55 20.04 7.87 87.66 0.69 20.73 16 13 O -0.56 -24.30 16.19 -3.05 -0.05 -24.35 16 14 C -0.10 -4.28 5.16 71.24 0.37 -3.91 16 15 S -0.16 -8.56 18.55 -56.49 -1.05 -9.60 16 16 C -0.53 -31.96 10.04 67.95 0.68 -31.28 16 17 H 0.06 3.64 8.03 -2.91 -0.02 3.61 16 18 C 0.05 2.74 5.50 84.86 0.47 3.20 16 19 N -0.92 -56.75 13.97 21.65 0.30 -56.44 16 20 Si 0.92 45.42 27.74 68.60 1.90 47.32 16 21 H -0.26 -12.56 7.11 99.48 0.71 -11.86 16 22 H -0.26 -11.83 7.11 99.48 0.71 -11.12 16 23 H -0.24 -11.59 6.74 99.48 0.67 -10.92 16 24 C 0.10 1.87 6.46 86.73 0.56 2.43 16 25 C -0.09 -0.92 3.42 -9.61 -0.03 -0.95 16 26 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16 27 C -0.14 -0.83 8.80 71.98 0.63 -0.20 16 28 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.04 0.96 8.10 -2.39 -0.02 0.94 16 34 H 0.06 1.09 8.10 -2.39 -0.02 1.07 16 35 H 0.12 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.41 4.21 6.82 -92.71 -0.63 3.57 16 38 H 0.06 1.65 7.48 -2.39 -0.02 1.63 16 39 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 40 H 0.10 4.05 8.14 -2.40 -0.02 4.03 16 41 H 0.10 3.96 7.85 -2.39 -0.02 3.94 16 42 H 0.28 15.84 8.31 -92.71 -0.77 15.07 16 43 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 44 H 0.07 1.28 7.82 -2.39 -0.02 1.27 16 45 H 0.06 0.34 6.21 -2.39 -0.01 0.32 16 46 H 0.07 0.37 8.14 -2.38 -0.02 0.36 16 47 H 0.07 0.37 8.14 -2.39 -0.02 0.36 16 Total: -1.00 -79.81 394.00 2.55 -77.26 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: 0.28 Total: 13.51 kcal Atomic # 6 Polarization: -7.06 SS G_CDS: 5.95 Total: -1.11 kcal Atomic # 7 Polarization: -82.50 SS G_CDS: -4.44 Total: -86.93 kcal Atomic # 8 Polarization: -40.36 SS G_CDS: -0.10 Total: -40.45 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 1.90 Total: 47.32 kcal Atomic # 16 Polarization: -8.56 SS G_CDS: -1.05 Total: -9.60 kcal Total: -79.81 2.55 -77.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071655481.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.332 kcal (2) G-P(sol) polarization free energy of solvation -79.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds