Wall clock time and date at job start Tue Mar 31 2020 16:19:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46886 * 2 1 4 4 C 1.52997 * 109.47060 * 180.02562 * 3 2 1 5 5 C 1.50697 * 109.47466 * 180.02562 * 4 3 2 6 6 O 1.21282 * 120.00011 * 0.02562 * 5 4 3 7 7 N 1.34777 * 120.00369 * 180.02562 * 5 4 3 8 8 C 1.46505 * 120.00115 * 180.02562 * 7 5 4 9 9 H 1.08994 * 110.88505 * 37.42658 * 8 7 5 10 10 C 1.54904 * 111.00260 * 273.54460 * 8 7 5 11 11 N 1.47422 * 104.83253 * 278.93788 * 10 8 7 12 12 C 1.34781 * 125.64836 * 155.90850 * 11 10 8 13 13 O 1.21284 * 119.99928 * 179.97438 * 12 11 10 14 14 C 1.50694 * 120.00180 * 359.97152 * 12 11 10 15 15 S 1.80995 * 109.47492 * 179.97438 * 14 12 11 16 16 C 1.76201 * 100.00202 * 180.02562 * 15 14 12 17 17 H 1.07998 * 119.99943 * 0.02562 * 16 15 14 18 18 C 1.38796 * 119.99739 * 180.02562 * 16 15 14 19 19 N 1.31634 * 120.00484 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 119.99771 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47037 * 60.00193 * 20 18 16 22 22 H 1.48506 * 109.46967 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.46963 * 299.99909 * 20 18 16 24 24 C 1.47018 * 108.70432 * 335.86946 * 11 10 8 25 25 C 1.54327 * 107.27084 * 1.06255 * 24 11 10 26 26 H 1.08998 * 110.71887 * 263.82996 * 25 24 11 27 27 C 1.53002 * 110.71940 * 140.55420 * 25 24 11 28 28 H 1.09002 * 109.47508 * 59.99571 * 1 2 3 29 29 H 1.09000 * 109.47437 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47109 * 299.99380 * 1 2 3 31 31 H 1.09001 * 109.46652 * 240.00345 * 2 1 3 32 32 H 1.08992 * 109.47514 * 120.00434 * 2 1 3 33 33 H 1.09002 * 109.47398 * 300.00496 * 3 2 1 34 34 H 1.09001 * 109.47194 * 60.00677 * 3 2 1 35 35 H 1.09002 * 109.47153 * 300.00319 * 4 3 2 36 36 H 1.08998 * 109.47533 * 59.99948 * 4 3 2 37 37 H 0.97003 * 119.99640 * 0.02562 * 7 5 4 38 38 H 1.08998 * 110.36633 * 37.77429 * 10 8 7 39 39 H 1.08998 * 110.36739 * 160.09538 * 10 8 7 40 40 H 1.08999 * 109.47369 * 300.00306 * 14 12 11 41 41 H 1.09007 * 109.47109 * 59.99944 * 14 12 11 42 42 H 0.96993 * 120.00161 * 179.97438 * 19 18 16 43 43 H 1.09000 * 109.88407 * 120.47639 * 24 11 10 44 44 H 1.08998 * 109.88656 * 241.48738 * 24 11 10 45 45 H 1.08995 * 109.46957 * 306.47961 * 27 25 24 46 46 H 1.08999 * 109.46691 * 66.48143 * 27 25 24 47 47 H 1.09002 * 109.46641 * 186.47893 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 6 4.0723 2.8633 0.0000 6 8 3.2842 3.7852 0.0013 7 7 5.3974 3.1097 -0.0009 8 6 5.8857 4.4909 0.0002 9 1 5.2533 5.1261 0.6205 10 6 5.9851 5.0459 -1.4426 11 7 7.2604 4.5197 -1.9622 12 6 7.5651 4.3422 -3.2631 13 8 8.6502 3.9006 -3.5770 14 6 6.5575 4.6923 -4.3276 15 16 7.2586 4.3448 -5.9597 16 6 5.9091 4.8322 -6.9825 17 1 5.0015 5.2100 -6.5353 18 6 6.0126 4.7307 -8.3628 19 7 7.1190 4.2708 -8.9080 20 14 4.5817 5.2468 -9.4472 21 1 4.2768 6.6814 -9.2148 22 1 4.9424 5.0425 -10.8732 23 1 3.3886 4.4271 -9.1155 24 6 8.1452 4.2215 -0.8266 25 6 7.3654 4.5572 0.4622 26 1 7.6150 5.5581 0.8142 27 6 7.6407 3.5153 1.5483 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5137 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.6765 1.9564 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 3.9337 0.9286 0.8891 36 1 3.9330 0.9289 -0.8908 37 1 6.0277 2.3723 -0.0024 38 1 5.1520 4.6854 -2.0459 39 1 6.0015 6.1357 -1.4296 40 1 5.6560 4.0966 -4.1846 41 1 6.3081 5.7512 -4.2576 42 1 7.1911 4.1995 -9.8726 43 1 8.4133 3.1650 -0.8330 44 1 9.0456 4.8326 -0.8876 45 1 7.4389 2.5189 1.1554 46 1 8.6839 3.5797 1.8574 47 1 6.9953 3.7054 2.4059 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071655483.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:19:39 Heat of formation + Delta-G solvation = -92.622152 kcal Electronic energy + Delta-G solvation = -25882.755874 eV Core-core repulsion = 22190.923134 eV Total energy + Delta-G solvation = -3691.832740 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.70166 -39.31601 -37.62743 -35.58020 -34.13589 -32.75487 -32.42204 -30.92571 -29.48827 -28.92797 -26.19976 -25.41196 -25.10182 -23.02704 -21.55275 -20.74927 -20.26523 -19.32449 -17.73314 -17.35114 -16.87038 -16.46931 -16.22218 -15.64087 -15.08510 -14.79983 -14.71477 -14.55783 -14.20119 -13.94941 -13.90341 -13.75040 -13.31005 -13.10808 -12.88948 -12.60876 -12.56011 -12.46845 -12.35862 -11.96122 -11.62893 -11.57755 -11.49715 -11.32617 -11.25145 -11.08378 -11.02916 -11.02143 -10.84393 -10.75782 -10.02599 -9.82323 -9.55036 -9.31737 -9.05168 -8.49912 -8.24226 -6.50283 -6.20940 -3.91865 2.43468 2.86953 2.89942 3.04911 3.24734 3.26736 3.30115 3.60813 4.00105 4.21372 4.27259 4.45435 4.49007 4.55977 4.66992 4.90370 4.94007 4.96689 5.01940 5.04289 5.14084 5.19498 5.21673 5.30015 5.36772 5.38372 5.51044 5.54055 5.55942 5.60623 5.61598 5.67395 5.67639 5.74604 5.84171 5.88057 5.92465 5.99238 6.10511 6.14719 6.23161 6.38992 7.23431 7.59985 7.62436 8.00387 8.36048 8.53415 9.24324 10.86457 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.008668 B = 0.003345 C = 0.002569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3229.551633 B = 8369.616185 C =10898.454788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.105 4.105 4 C -0.142 4.142 5 C 0.514 3.486 6 O -0.538 6.538 7 N -0.720 5.720 8 C 0.136 3.864 9 H 0.109 0.891 10 C 0.090 3.910 11 N -0.625 5.625 12 C 0.549 3.451 13 O -0.516 6.516 14 C -0.147 4.147 15 S -0.060 6.060 16 C -0.535 4.535 17 H 0.072 0.928 18 C 0.074 3.926 19 N -0.868 5.868 20 Si 0.918 3.082 21 H -0.274 1.274 22 H -0.283 1.283 23 H -0.274 1.274 24 C 0.110 3.890 25 C -0.110 4.110 26 H 0.100 0.900 27 C -0.140 4.140 28 H 0.056 0.944 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.063 0.937 32 H 0.060 0.940 33 H 0.071 0.929 34 H 0.068 0.932 35 H 0.092 0.908 36 H 0.095 0.905 37 H 0.402 0.598 38 H 0.083 0.917 39 H 0.079 0.921 40 H 0.087 0.913 41 H 0.088 0.912 42 H 0.269 0.731 43 H 0.067 0.933 44 H 0.070 0.930 45 H 0.057 0.943 46 H 0.064 0.936 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.939 -5.120 25.069 26.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.143 4.143 4 C -0.182 4.182 5 C 0.302 3.698 6 O -0.415 6.415 7 N -0.373 5.373 8 C 0.030 3.970 9 H 0.127 0.873 10 C -0.035 4.035 11 N -0.363 5.363 12 C 0.338 3.662 13 O -0.390 6.390 14 C -0.297 4.297 15 S 0.167 5.833 16 C -0.684 4.684 17 H 0.090 0.910 18 C -0.135 4.135 19 N -0.503 5.503 20 Si 0.745 3.255 21 H -0.199 1.199 22 H -0.208 1.208 23 H -0.199 1.199 24 C -0.013 4.013 25 C -0.130 4.130 26 H 0.119 0.881 27 C -0.198 4.198 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.090 0.910 34 H 0.087 0.913 35 H 0.110 0.890 36 H 0.113 0.887 37 H 0.238 0.762 38 H 0.101 0.899 39 H 0.097 0.903 40 H 0.105 0.895 41 H 0.107 0.893 42 H 0.079 0.921 43 H 0.085 0.915 44 H 0.088 0.912 45 H 0.076 0.924 46 H 0.083 0.917 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -4.771 -5.172 24.326 25.323 hybrid contribution -1.799 0.555 -0.416 1.928 sum -6.570 -4.617 23.910 25.222 Atomic orbital electron populations 1.21761 0.95689 1.01543 1.02048 1.21549 0.96193 0.96557 1.02017 1.21374 0.92517 0.96705 1.03677 1.21720 0.98362 0.93644 1.04504 1.20798 0.81893 0.91949 0.75206 1.90716 1.55213 1.46518 1.49013 1.46008 1.07265 1.08274 1.75735 1.22072 0.94933 0.83931 0.96021 0.87294 1.22742 0.87158 0.98973 0.94591 1.48490 1.16248 1.66471 1.05044 1.20024 0.88189 0.77032 0.80967 1.90709 1.23825 1.43821 1.80615 1.23506 1.00959 1.04475 1.00759 1.85353 1.22718 1.84951 0.90311 1.22822 1.01947 1.50152 0.93434 0.90989 1.24985 0.96721 0.94760 0.97037 1.70007 1.25654 1.42895 1.11793 0.86228 0.81354 0.79179 0.78785 1.19900 1.20783 1.19905 1.21961 0.93700 1.01269 0.84330 1.22555 0.93564 1.01617 0.95222 0.88145 1.21704 1.02303 0.97988 0.97761 0.92524 0.92794 0.92759 0.91817 0.92099 0.91022 0.91294 0.88988 0.88650 0.76232 0.89877 0.90327 0.89466 0.89326 0.92128 0.91474 0.91212 0.92431 0.91698 0.91807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.91 37.16 0.37 -0.70 16 2 C -0.13 -0.87 5.93 -26.73 -0.16 -1.03 16 3 C -0.10 -0.89 4.50 -26.73 -0.12 -1.01 16 4 C -0.14 -1.07 5.70 -27.89 -0.16 -1.23 16 5 C 0.51 5.25 7.83 -10.99 -0.09 5.17 16 6 O -0.54 -7.49 15.73 5.56 0.09 -7.41 16 7 N -0.72 -6.14 4.69 -51.73 -0.24 -6.38 16 8 C 0.14 1.21 3.07 -65.78 -0.20 1.01 16 9 H 0.11 0.97 7.73 -51.93 -0.40 0.57 16 10 C 0.09 1.05 6.38 -2.53 -0.02 1.03 16 11 N -0.62 -8.87 3.33 -170.53 -0.57 -9.43 16 12 C 0.55 10.69 7.87 -10.99 -0.09 10.61 16 13 O -0.52 -11.96 16.19 5.55 0.09 -11.87 16 14 C -0.15 -3.10 5.16 36.00 0.19 -2.92 16 15 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 16 C -0.54 -15.51 9.50 30.94 0.29 -15.21 16 17 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 18 C 0.07 2.14 5.49 -17.43 -0.10 2.05 16 19 N -0.87 -26.39 13.22 55.49 0.73 -25.66 16 20 Si 0.92 21.69 29.55 -169.99 -5.02 16.67 16 21 H -0.27 -6.32 7.11 56.52 0.40 -5.91 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 23 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 24 C 0.11 1.20 6.46 -3.06 -0.02 1.18 16 25 C -0.11 -0.80 3.42 -88.78 -0.30 -1.10 16 26 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 27 C -0.14 -0.75 8.71 37.16 0.32 -0.43 16 28 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.07 0.73 8.10 -51.93 -0.42 0.31 16 34 H 0.07 0.62 8.10 -51.93 -0.42 0.20 16 35 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.40 2.79 6.89 -40.82 -0.28 2.51 16 38 H 0.08 1.11 7.48 -51.93 -0.39 0.73 16 39 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 40 H 0.09 1.76 7.85 -51.92 -0.41 1.35 16 41 H 0.09 1.77 8.14 -51.91 -0.42 1.35 16 42 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 43 H 0.07 0.74 7.76 -51.93 -0.40 0.33 16 44 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 45 H 0.06 0.29 6.35 -51.93 -0.33 -0.04 16 46 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 47 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 LS Contribution 396.76 15.07 5.98 5.98 Total: -1.00 -36.14 396.76 -9.32 -45.46 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: -8.09 Total: -0.91 kcal Atomic # 6 Polarization: -2.50 SS G_CDS: -0.08 Total: -2.57 kcal Atomic # 7 Polarization: -41.40 SS G_CDS: -0.08 Total: -41.48 kcal Atomic # 8 Polarization: -19.45 SS G_CDS: 0.18 Total: -19.28 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -36.14 -9.32 -45.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071655483.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.159 kcal (2) G-P(sol) polarization free energy of solvation -36.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds