Wall clock time and date at job start Tue Mar 31 2020 16:19:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46886 * 2 1 4 4 C 1.52997 * 109.47060 * 180.02562 * 3 2 1 5 5 C 1.50697 * 109.47466 * 180.02562 * 4 3 2 6 6 O 1.21282 * 120.00011 * 0.02562 * 5 4 3 7 7 N 1.34777 * 120.00369 * 180.02562 * 5 4 3 8 8 C 1.46505 * 120.00115 * 180.02562 * 7 5 4 9 9 H 1.08994 * 110.88505 * 37.42658 * 8 7 5 10 10 C 1.54904 * 111.00260 * 273.54460 * 8 7 5 11 11 N 1.47422 * 104.83253 * 278.93788 * 10 8 7 12 12 C 1.34781 * 125.64836 * 155.90850 * 11 10 8 13 13 O 1.21284 * 119.99928 * 179.97438 * 12 11 10 14 14 C 1.50694 * 120.00180 * 359.97152 * 12 11 10 15 15 S 1.80995 * 109.47492 * 179.97438 * 14 12 11 16 16 C 1.76201 * 100.00202 * 180.02562 * 15 14 12 17 17 H 1.07998 * 119.99943 * 0.02562 * 16 15 14 18 18 C 1.38796 * 119.99739 * 180.02562 * 16 15 14 19 19 N 1.31634 * 120.00484 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 119.99771 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47037 * 60.00193 * 20 18 16 22 22 H 1.48506 * 109.46967 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.46963 * 299.99909 * 20 18 16 24 24 C 1.47018 * 108.70432 * 335.86946 * 11 10 8 25 25 C 1.54327 * 107.27084 * 1.06255 * 24 11 10 26 26 H 1.08998 * 110.71887 * 263.82996 * 25 24 11 27 27 C 1.53002 * 110.71940 * 140.55420 * 25 24 11 28 28 H 1.09002 * 109.47508 * 59.99571 * 1 2 3 29 29 H 1.09000 * 109.47437 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47109 * 299.99380 * 1 2 3 31 31 H 1.09001 * 109.46652 * 240.00345 * 2 1 3 32 32 H 1.08992 * 109.47514 * 120.00434 * 2 1 3 33 33 H 1.09002 * 109.47398 * 300.00496 * 3 2 1 34 34 H 1.09001 * 109.47194 * 60.00677 * 3 2 1 35 35 H 1.09002 * 109.47153 * 300.00319 * 4 3 2 36 36 H 1.08998 * 109.47533 * 59.99948 * 4 3 2 37 37 H 0.97003 * 119.99640 * 0.02562 * 7 5 4 38 38 H 1.08998 * 110.36633 * 37.77429 * 10 8 7 39 39 H 1.08998 * 110.36739 * 160.09538 * 10 8 7 40 40 H 1.08999 * 109.47369 * 300.00306 * 14 12 11 41 41 H 1.09007 * 109.47109 * 59.99944 * 14 12 11 42 42 H 0.96993 * 120.00161 * 179.97438 * 19 18 16 43 43 H 1.09000 * 109.88407 * 120.47639 * 24 11 10 44 44 H 1.08998 * 109.88656 * 241.48738 * 24 11 10 45 45 H 1.08995 * 109.46957 * 306.47961 * 27 25 24 46 46 H 1.08999 * 109.46691 * 66.48143 * 27 25 24 47 47 H 1.09002 * 109.46641 * 186.47893 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 6 4.0723 2.8633 0.0000 6 8 3.2842 3.7852 0.0013 7 7 5.3974 3.1097 -0.0009 8 6 5.8857 4.4909 0.0002 9 1 5.2533 5.1261 0.6205 10 6 5.9851 5.0459 -1.4426 11 7 7.2604 4.5197 -1.9622 12 6 7.5651 4.3422 -3.2631 13 8 8.6502 3.9006 -3.5770 14 6 6.5575 4.6923 -4.3276 15 16 7.2586 4.3448 -5.9597 16 6 5.9091 4.8322 -6.9825 17 1 5.0015 5.2100 -6.5353 18 6 6.0126 4.7307 -8.3628 19 7 7.1190 4.2708 -8.9080 20 14 4.5817 5.2468 -9.4472 21 1 4.2768 6.6814 -9.2148 22 1 4.9424 5.0425 -10.8732 23 1 3.3886 4.4271 -9.1155 24 6 8.1452 4.2215 -0.8266 25 6 7.3654 4.5572 0.4622 26 1 7.6150 5.5581 0.8142 27 6 7.6407 3.5153 1.5483 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5137 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.6765 1.9564 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 3.9337 0.9286 0.8891 36 1 3.9330 0.9289 -0.8908 37 1 6.0277 2.3723 -0.0024 38 1 5.1520 4.6854 -2.0459 39 1 6.0015 6.1357 -1.4296 40 1 5.6560 4.0966 -4.1846 41 1 6.3081 5.7512 -4.2576 42 1 7.1911 4.1995 -9.8726 43 1 8.4133 3.1650 -0.8330 44 1 9.0456 4.8326 -0.8876 45 1 7.4389 2.5189 1.1554 46 1 8.6839 3.5797 1.8574 47 1 6.9953 3.7054 2.4059 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071655483.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:19:38 Heat of formation + Delta-G solvation = -116.637373 kcal Electronic energy + Delta-G solvation = -25883.797252 eV Core-core repulsion = 22190.923134 eV Total energy + Delta-G solvation = -3692.874118 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.65282 -40.44167 -38.80577 -36.22593 -35.16426 -34.62431 -33.61393 -31.57932 -30.98405 -29.81224 -27.78769 -26.94698 -25.81624 -23.95137 -22.21133 -21.47595 -21.02640 -20.71654 -19.58840 -18.32717 -17.94437 -17.65270 -16.98296 -16.91322 -16.81997 -16.31221 -15.76185 -15.59020 -15.51685 -15.05489 -14.66232 -14.52706 -14.47367 -14.33537 -13.82858 -13.67066 -13.56182 -13.47388 -13.24027 -13.19408 -13.12091 -12.90159 -12.67708 -12.35827 -12.19691 -12.10136 -11.96685 -11.86366 -11.77357 -11.73280 -11.44953 -11.16728 -11.06004 -10.85593 -10.35911 -10.26775 -9.67648 -8.72360 -8.38263 -6.17462 1.19393 1.41004 1.41190 1.49213 1.52177 1.64548 2.02644 2.18078 2.23764 2.95542 3.13588 3.32890 3.45229 3.75797 3.79128 3.86900 3.94566 4.06749 4.12711 4.17901 4.32802 4.36015 4.37717 4.46871 4.49424 4.57622 4.64407 4.66493 4.73198 4.79008 4.81387 4.94669 5.00698 5.05159 5.11463 5.12608 5.27920 5.29046 5.37219 5.38936 5.39326 5.47191 5.52614 6.15619 6.27407 6.52262 7.02583 7.04962 7.25023 8.70820 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.008668 B = 0.003345 C = 0.002569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3229.551633 B = 8369.616185 C =10898.454788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.122 4.122 3 C -0.103 4.103 4 C -0.138 4.138 5 C 0.511 3.489 6 O -0.580 6.580 7 N -0.712 5.712 8 C 0.142 3.858 9 H 0.117 0.883 10 C 0.082 3.918 11 N -0.611 5.611 12 C 0.548 3.452 13 O -0.562 6.562 14 C -0.122 4.122 15 S -0.141 6.141 16 C -0.551 4.551 17 H 0.078 0.922 18 C 0.017 3.983 19 N -0.909 5.909 20 Si 0.997 3.003 21 H -0.263 1.263 22 H -0.275 1.275 23 H -0.263 1.263 24 C 0.103 3.897 25 C -0.090 4.090 26 H 0.120 0.880 27 C -0.137 4.137 28 H 0.045 0.955 29 H 0.062 0.938 30 H 0.055 0.945 31 H 0.064 0.936 32 H 0.077 0.923 33 H 0.045 0.955 34 H 0.060 0.940 35 H 0.123 0.877 36 H 0.102 0.898 37 H 0.412 0.588 38 H 0.064 0.936 39 H 0.094 0.906 40 H 0.096 0.904 41 H 0.100 0.900 42 H 0.273 0.727 43 H 0.068 0.932 44 H 0.067 0.933 45 H 0.061 0.939 46 H 0.073 0.927 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.003 -5.233 27.246 28.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.159 4.159 3 C -0.141 4.141 4 C -0.177 4.177 5 C 0.299 3.701 6 O -0.460 6.460 7 N -0.364 5.364 8 C 0.036 3.964 9 H 0.135 0.865 10 C -0.042 4.042 11 N -0.346 5.346 12 C 0.336 3.664 13 O -0.440 6.440 14 C -0.273 4.273 15 S 0.086 5.914 16 C -0.698 4.698 17 H 0.096 0.904 18 C -0.188 4.188 19 N -0.545 5.545 20 Si 0.818 3.182 21 H -0.187 1.187 22 H -0.200 1.200 23 H -0.187 1.187 24 C -0.019 4.019 25 C -0.109 4.109 26 H 0.138 0.862 27 C -0.195 4.195 28 H 0.064 0.936 29 H 0.081 0.919 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.096 0.904 33 H 0.064 0.936 34 H 0.079 0.921 35 H 0.141 0.859 36 H 0.121 0.879 37 H 0.249 0.751 38 H 0.083 0.917 39 H 0.112 0.888 40 H 0.114 0.886 41 H 0.118 0.882 42 H 0.082 0.918 43 H 0.087 0.913 44 H 0.085 0.915 45 H 0.080 0.920 46 H 0.092 0.908 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -5.833 -5.293 26.568 27.711 hybrid contribution -1.465 0.605 -0.962 1.854 sum -7.298 -4.689 25.606 27.036 Atomic orbital electron populations 1.21789 0.95911 1.02010 1.01611 1.21529 0.96029 0.95511 1.02839 1.21323 0.93372 0.97378 1.02012 1.21756 0.97514 0.92187 1.06291 1.21284 0.81969 0.92593 0.74219 1.90700 1.56281 1.47915 1.51059 1.45988 1.07074 1.08587 1.74785 1.22059 0.96262 0.84124 0.93977 0.86504 1.23002 0.85094 1.00010 0.96073 1.48364 1.17754 1.64450 1.04059 1.19632 0.87072 0.77232 0.82423 1.90688 1.25282 1.46362 1.81678 1.23298 1.01274 1.05264 0.97432 1.85457 1.24912 1.85645 0.95336 1.23139 1.02059 1.50474 0.94177 0.90385 1.26106 0.99835 0.94347 0.98550 1.70161 1.28066 1.43964 1.12325 0.85027 0.77372 0.79204 0.76548 1.18726 1.19958 1.18747 1.22274 0.93675 1.01425 0.84525 1.22532 0.91151 1.03492 0.93719 0.86187 1.21716 1.03224 0.97357 0.97198 0.93600 0.91852 0.92627 0.91757 0.90401 0.93635 0.92081 0.85870 0.87938 0.75060 0.91706 0.88784 0.88559 0.88152 0.91822 0.91339 0.91476 0.92040 0.90759 0.90661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.04 9.91 71.98 0.71 -1.33 16 2 C -0.12 -1.51 5.93 30.59 0.18 -1.33 16 3 C -0.10 -1.66 4.50 30.59 0.14 -1.52 16 4 C -0.14 -1.81 5.70 29.85 0.17 -1.64 16 5 C 0.51 9.69 7.83 87.66 0.69 10.38 16 6 O -0.58 -15.84 15.73 -3.04 -0.05 -15.89 16 7 N -0.71 -10.57 4.69 -435.97 -2.05 -12.62 16 8 C 0.14 2.18 3.07 46.38 0.14 2.32 16 9 H 0.12 1.76 7.73 -2.39 -0.02 1.74 16 10 C 0.08 1.79 6.38 86.85 0.55 2.35 16 11 N -0.61 -16.77 3.33 -811.82 -2.70 -19.47 16 12 C 0.55 21.56 7.87 87.65 0.69 22.25 16 13 O -0.56 -26.77 16.19 -3.04 -0.05 -26.82 16 14 C -0.12 -5.22 5.16 71.23 0.37 -4.86 16 15 S -0.14 -8.05 20.57 -56.49 -1.16 -9.21 16 16 C -0.55 -32.41 9.50 67.95 0.65 -31.77 16 17 H 0.08 4.33 7.80 -2.91 -0.02 4.30 16 18 C 0.02 0.97 5.49 84.86 0.47 1.44 16 19 N -0.91 -56.40 13.22 21.65 0.29 -56.12 16 20 Si 1.00 44.44 29.55 68.60 2.03 46.47 16 21 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 22 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 23 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 24 C 0.10 2.05 6.46 86.73 0.56 2.61 16 25 C -0.09 -1.01 3.42 -9.60 -0.03 -1.04 16 26 H 0.12 0.99 8.14 -2.39 -0.02 0.97 16 27 C -0.14 -0.96 8.71 71.98 0.63 -0.34 16 28 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.04 0.96 8.10 -2.39 -0.02 0.94 16 34 H 0.06 1.07 8.10 -2.39 -0.02 1.05 16 35 H 0.12 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.41 4.59 6.89 -92.71 -0.64 3.95 16 38 H 0.06 1.70 7.48 -2.39 -0.02 1.68 16 39 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 40 H 0.10 3.92 7.85 -2.40 -0.02 3.90 16 41 H 0.10 4.03 8.14 -2.39 -0.02 4.01 16 42 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 43 H 0.07 1.39 7.76 -2.39 -0.02 1.37 16 44 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 45 H 0.06 0.40 6.35 -2.39 -0.02 0.39 16 46 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 47 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 Total: -1.00 -81.83 396.76 2.53 -79.30 By element: Atomic # 1 Polarization: 16.54 SS G_CDS: 0.31 Total: 16.84 kcal Atomic # 6 Polarization: -8.40 SS G_CDS: 5.91 Total: -2.49 kcal Atomic # 7 Polarization: -83.75 SS G_CDS: -4.46 Total: -88.21 kcal Atomic # 8 Polarization: -42.61 SS G_CDS: -0.10 Total: -42.71 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.47 kcal Atomic # 16 Polarization: -8.05 SS G_CDS: -1.16 Total: -9.21 kcal Total: -81.83 2.53 -79.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071655483.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.338 kcal (2) G-P(sol) polarization free energy of solvation -81.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds