Wall clock time and date at job start Tue Mar 31 2020 14:47:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17392 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39720 * 119.99777 * 47.95820 * 3 2 1 5 5 C 1.37596 * 120.00091 * 179.97438 * 4 3 2 6 6 C 1.39746 * 120.00018 * 0.02562 * 5 4 3 7 7 C 1.47686 * 120.00275 * 179.97438 * 6 5 4 8 8 O 1.21577 * 120.00140 * 0.02562 * 7 6 5 9 9 N 1.34771 * 119.99573 * 180.02562 * 7 6 5 10 10 C 1.46503 * 119.99631 * 180.02562 * 9 7 6 11 11 C 1.52998 * 109.47006 * 180.02562 * 10 9 7 12 12 H 1.08996 * 108.45580 * 62.11528 * 11 10 9 13 13 C 1.46923 * 108.62007 * 179.97438 * 11 10 9 14 14 N 1.50112 * 106.85795 * 177.86866 * 13 11 10 15 15 C 1.36941 * 120.63455 * 111.36479 * 14 13 11 16 16 H 1.08005 * 119.99670 * 155.65046 * 15 14 13 17 17 C 1.38813 * 120.00170 * 335.65613 * 15 14 13 18 18 N 1.31616 * 119.99772 * 340.71948 * 17 15 14 19 19 Si 1.86798 * 119.99827 * 160.71745 * 17 15 14 20 20 H 1.48498 * 109.47310 * 90.00201 * 19 17 15 21 21 H 1.48499 * 109.46817 * 209.99904 * 19 17 15 22 22 H 1.48496 * 109.47468 * 330.00046 * 19 17 15 23 23 C 1.43395 * 118.74984 * 291.51499 * 14 13 11 24 24 C 1.55330 * 116.33321 * 89.19749 * 23 14 13 25 25 C 1.55188 * 108.87098 * 319.47404 * 24 23 14 26 26 O 1.39647 * 110.57257 * 322.14323 * 25 24 23 27 27 C 1.39738 * 119.98979 * 0.25566 * 6 5 4 28 28 C 1.37604 * 119.99732 * 359.46413 * 27 6 5 29 29 H 4.51956 * 14.06512 * 0.02562 * 4 2 1 30 30 H 1.08002 * 119.99446 * 359.97438 * 4 3 2 31 31 H 1.08008 * 119.99849 * 180.02562 * 5 4 3 32 32 H 0.97001 * 120.00305 * 359.97438 * 9 7 6 33 33 H 1.09002 * 109.47675 * 59.99700 * 10 9 7 34 34 H 1.09002 * 109.46828 * 299.99784 * 10 9 7 35 35 H 1.09003 * 109.98761 * 297.23177 * 13 11 10 36 36 H 1.08997 * 109.98917 * 58.50466 * 13 11 10 37 37 H 0.97005 * 119.99888 * 180.02562 * 18 17 15 38 38 H 1.09001 * 108.06771 * 327.41335 * 23 14 13 39 39 H 1.08999 * 107.92020 * 210.85810 * 23 14 13 40 40 H 1.09002 * 109.56663 * 199.65863 * 24 23 14 41 41 H 1.09000 * 109.57011 * 79.29202 * 24 23 14 42 42 H 1.09005 * 109.25693 * 201.86168 * 25 24 23 43 43 H 1.09002 * 109.25918 * 82.42817 * 25 24 23 44 44 H 1.08000 * 119.99996 * 179.72248 * 27 6 5 45 45 H 1.07999 * 119.99771 * 180.27244 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3049 -0.8094 -0.8986 5 6 4.6808 -0.8084 -0.8991 6 6 5.3793 0.0023 -0.0003 7 6 6.8561 0.0030 -0.0003 8 8 7.4644 -0.7015 -0.7825 9 7 7.5296 0.7845 0.8669 10 6 8.9946 0.7856 0.8665 11 6 9.5041 1.7508 1.9387 12 1 9.1638 1.3966 2.9117 13 6 10.9732 1.7368 1.9225 14 7 11.4293 2.7327 2.9490 15 6 12.0513 2.3173 4.0961 16 1 12.7103 2.9887 4.6266 17 6 11.8347 1.0332 4.5771 18 7 10.7799 0.3520 4.1828 19 14 13.0405 0.2723 5.7840 20 1 12.6221 0.5951 7.1717 21 1 13.0587 -1.2014 5.6026 22 1 14.3992 0.8183 5.5370 23 6 11.1987 4.1271 2.7073 24 6 9.8460 4.6995 3.2127 25 6 8.7251 3.6649 2.9272 26 8 8.9394 3.0356 1.6991 27 6 4.6801 0.8080 0.9024 28 6 3.3041 0.8112 0.8987 29 1 -1.0501 -0.0001 -0.0009 30 1 2.7650 -1.4362 -1.5929 31 1 5.2211 -1.4343 -1.5940 32 1 7.0443 1.3469 1.4907 33 1 9.3576 1.1033 -0.1110 34 1 9.3587 -0.2193 1.0802 35 1 11.3392 0.7427 2.1794 36 1 11.3377 2.0246 0.9365 37 1 10.6284 -0.5452 4.5192 38 1 11.2591 4.2985 1.6325 39 1 12.0032 4.6876 3.1834 40 1 9.6255 5.6304 2.6901 41 1 9.9063 4.8861 4.2849 42 1 7.7619 4.1749 2.9067 43 1 8.7175 2.9155 3.7187 44 1 5.2197 1.4312 1.6000 45 1 2.7637 1.4371 1.5933 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073724239.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:06 Heat of formation + Delta-G solvation = 32.354114 kcal Electronic energy + Delta-G solvation = -27587.268234 eV Core-core repulsion = 23765.410921 eV Total energy + Delta-G solvation = -3821.857313 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.22236 -39.12215 -38.25497 -35.06154 -34.60095 -34.08327 -32.29025 -31.44730 -31.09735 -30.47336 -28.60255 -25.88324 -25.34741 -24.17219 -22.86791 -22.37913 -20.84790 -20.41570 -19.62333 -19.22895 -17.92063 -17.05053 -16.17491 -15.99815 -15.79968 -15.08826 -15.04011 -14.85368 -14.69541 -14.38569 -14.10580 -13.87755 -13.78282 -13.40388 -13.11891 -13.01764 -12.59083 -12.39447 -12.29499 -11.98194 -11.62788 -11.45226 -11.35989 -11.22192 -10.86660 -10.76930 -10.74854 -10.51742 -10.19530 -10.00256 -9.82641 -9.68754 -9.52768 -9.28455 -8.91331 -8.82787 -8.63173 -8.52781 -6.84209 -5.94560 -3.32989 0.34045 1.13172 2.40013 2.40221 3.24294 3.31399 3.38591 3.40155 3.42736 3.84434 3.90135 4.41822 4.59217 4.63174 4.67304 4.83591 5.06428 5.20983 5.25143 5.26314 5.26800 5.60811 5.70815 5.73981 5.78969 5.89159 5.96846 6.04380 6.09168 6.13891 6.17099 6.29957 6.38781 6.44917 6.50859 6.57691 6.64084 6.67342 6.79058 6.88276 6.93455 7.09026 7.17356 7.30149 7.69953 7.75076 8.09341 8.30093 8.40070 9.04883 9.73132 10.27279 11.14594 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.016766 B = 0.002733 C = 0.002630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.602094 B =10243.863561 C =10645.504160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.150 4.150 3 C 0.025 3.975 4 C -0.104 4.104 5 C -0.061 4.061 6 C -0.116 4.116 7 C 0.550 3.450 8 O -0.543 6.543 9 N -0.706 5.706 10 C 0.120 3.880 11 C 0.060 3.940 12 H 0.107 0.893 13 C 0.143 3.857 14 N -0.587 5.587 15 C -0.249 4.249 16 H 0.069 0.931 17 C 0.002 3.998 18 N -0.908 5.908 19 Si 0.904 3.096 20 H -0.288 1.288 21 H -0.289 1.289 22 H -0.280 1.280 23 C 0.160 3.840 24 C -0.172 4.172 25 C 0.066 3.934 26 O -0.370 6.370 27 C -0.084 4.084 28 C -0.102 4.102 29 H 0.225 0.775 30 H 0.132 0.868 31 H 0.142 0.858 32 H 0.400 0.600 33 H 0.064 0.936 34 H 0.081 0.919 35 H 0.104 0.896 36 H 0.020 0.980 37 H 0.255 0.745 38 H 0.032 0.968 39 H 0.033 0.967 40 H 0.050 0.950 41 H 0.056 0.944 42 H 0.051 0.949 43 H 0.063 0.937 44 H 0.134 0.866 45 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.404 1.120 -6.448 17.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.150 4.150 3 C 0.024 3.976 4 C -0.122 4.122 5 C -0.080 4.080 6 C -0.119 4.119 7 C 0.337 3.663 8 O -0.422 6.422 9 N -0.356 5.356 10 C -0.004 4.004 11 C 0.001 3.999 12 H 0.125 0.875 13 C 0.018 3.982 14 N -0.307 5.307 15 C -0.378 4.378 16 H 0.087 0.913 17 C -0.196 4.196 18 N -0.553 5.553 19 Si 0.734 3.266 20 H -0.216 1.216 21 H -0.215 1.215 22 H -0.206 1.206 23 C 0.031 3.969 24 C -0.213 4.213 25 C -0.012 4.012 26 O -0.288 6.288 27 C -0.102 4.102 28 C -0.120 4.120 29 H 0.242 0.758 30 H 0.150 0.850 31 H 0.160 0.840 32 H 0.235 0.765 33 H 0.082 0.918 34 H 0.099 0.901 35 H 0.122 0.878 36 H 0.038 0.962 37 H 0.066 0.934 38 H 0.050 0.950 39 H 0.051 0.949 40 H 0.068 0.932 41 H 0.075 0.925 42 H 0.069 0.931 43 H 0.081 0.919 44 H 0.152 0.848 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -15.941 0.537 -7.128 17.470 hybrid contribution 0.065 -0.131 1.366 1.374 sum -15.875 0.406 -5.762 16.893 Atomic orbital electron populations 1.24909 0.95771 0.99124 0.99161 1.20045 0.92025 1.01475 1.01453 1.16162 0.86642 0.97719 0.97028 1.21159 0.93768 0.98801 0.98503 1.21211 0.93315 0.96530 0.96924 1.20216 0.93576 0.99602 0.98547 1.18185 0.86794 0.80295 0.81065 1.90765 1.69769 1.41868 1.39846 1.45855 1.08319 1.43971 1.37432 1.21769 0.77977 1.00505 1.00112 1.22215 0.97132 0.81436 0.99090 0.87516 1.20740 0.91045 0.96886 0.89518 1.44113 1.67382 1.00148 1.19089 1.19249 1.19194 0.98055 1.01305 0.91324 1.24900 0.96969 0.98962 0.98747 1.69857 1.25531 1.12533 1.47387 0.86274 0.81232 0.78459 0.80665 1.21554 1.21518 1.20581 1.20377 0.93033 0.86167 0.97273 1.23580 0.99355 0.97867 1.00523 1.22357 0.95866 0.96010 0.86917 1.87516 1.81863 1.30841 1.28591 1.21302 0.94050 0.97464 0.97426 1.21119 0.93774 0.98684 0.98400 0.75834 0.84980 0.83995 0.76453 0.91770 0.90124 0.87784 0.96205 0.93446 0.95006 0.94880 0.93166 0.92488 0.93093 0.91878 0.84801 0.84947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.32 19.25 29.55 0.57 -0.75 16 2 C -0.15 -1.49 13.23 -38.84 -0.51 -2.00 16 3 C 0.02 0.26 5.73 -106.87 -0.61 -0.35 16 4 C -0.10 -1.08 9.73 -39.26 -0.38 -1.46 16 5 C -0.06 -0.73 9.57 -39.25 -0.38 -1.10 16 6 C -0.12 -1.53 5.88 -104.91 -0.62 -2.15 16 7 C 0.55 8.94 7.77 -12.40 -0.10 8.84 16 8 O -0.54 -10.53 16.33 5.30 0.09 -10.44 16 9 N -0.71 -11.22 5.35 -61.30 -0.33 -11.55 16 10 C 0.12 2.19 5.26 -4.04 -0.02 2.16 16 11 C 0.06 1.19 2.01 -29.64 -0.06 1.13 16 12 H 0.11 2.38 5.25 -51.93 -0.27 2.11 16 13 C 0.14 3.18 4.70 -4.93 -0.02 3.16 16 14 N -0.59 -13.83 2.62 -174.52 -0.46 -14.29 16 15 C -0.25 -6.39 9.61 -15.06 -0.14 -6.53 16 16 H 0.07 1.77 7.87 -52.48 -0.41 1.35 16 17 C 0.00 0.05 4.92 -17.43 -0.09 -0.04 16 18 N -0.91 -23.36 9.57 55.49 0.53 -22.83 16 19 Si 0.90 20.68 29.60 -169.99 -5.03 15.65 16 20 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 21 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 22 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 23 C 0.16 3.33 5.33 -4.45 -0.02 3.31 16 24 C -0.17 -3.13 6.75 -24.34 -0.16 -3.30 16 25 C 0.07 1.20 6.38 38.32 0.24 1.44 16 26 O -0.37 -6.99 9.34 -31.96 -0.30 -7.29 16 27 C -0.08 -0.92 9.52 -39.25 -0.37 -1.30 16 28 C -0.10 -1.03 9.73 -39.26 -0.38 -1.41 16 29 H 0.22 0.80 7.80 -54.09 -0.42 0.38 16 30 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 31 H 0.14 1.65 7.64 -52.48 -0.40 1.25 16 32 H 0.40 5.65 6.20 -40.82 -0.25 5.39 16 33 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 34 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 35 H 0.10 2.54 6.03 -51.93 -0.31 2.23 16 36 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 37 H 0.26 6.52 8.31 -40.82 -0.34 6.18 16 38 H 0.03 0.65 7.99 -51.93 -0.41 0.23 16 39 H 0.03 0.68 7.95 -51.93 -0.41 0.27 16 40 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.06 1.28 6.66 -51.93 -0.35 0.94 16 44 H 0.13 1.28 6.38 -52.49 -0.34 0.94 16 45 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 LS Contribution 372.56 15.07 5.61 5.61 Total: -1.00 -29.19 372.56 -9.05 -38.23 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: -6.10 Total: 7.26 kcal Atomic # 6 Polarization: 2.71 SS G_CDS: -3.06 Total: -0.35 kcal Atomic # 7 Polarization: -48.42 SS G_CDS: -0.25 Total: -48.67 kcal Atomic # 8 Polarization: -17.52 SS G_CDS: -0.21 Total: -17.74 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.03 Total: 15.65 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -29.19 -9.05 -38.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073724239.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.589 kcal (2) G-P(sol) polarization free energy of solvation -29.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.235 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds