Wall clock time and date at job start Tue Mar 31 2020 14:47:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17392 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39720 * 119.99777 * 47.95820 * 3 2 1 5 5 C 1.37596 * 120.00091 * 179.97438 * 4 3 2 6 6 C 1.39746 * 120.00018 * 0.02562 * 5 4 3 7 7 C 1.47686 * 120.00275 * 179.97438 * 6 5 4 8 8 O 1.21577 * 120.00140 * 0.02562 * 7 6 5 9 9 N 1.34771 * 119.99573 * 180.02562 * 7 6 5 10 10 C 1.46503 * 119.99631 * 180.02562 * 9 7 6 11 11 C 1.52998 * 109.47006 * 180.02562 * 10 9 7 12 12 H 1.08996 * 108.45580 * 62.11528 * 11 10 9 13 13 C 1.46923 * 108.62007 * 179.97438 * 11 10 9 14 14 N 1.50112 * 106.85795 * 177.86866 * 13 11 10 15 15 C 1.36941 * 120.63455 * 111.36479 * 14 13 11 16 16 H 1.08005 * 119.99670 * 155.65046 * 15 14 13 17 17 C 1.38813 * 120.00170 * 335.65613 * 15 14 13 18 18 N 1.31616 * 119.99772 * 340.71948 * 17 15 14 19 19 Si 1.86798 * 119.99827 * 160.71745 * 17 15 14 20 20 H 1.48498 * 109.47310 * 90.00201 * 19 17 15 21 21 H 1.48499 * 109.46817 * 209.99904 * 19 17 15 22 22 H 1.48496 * 109.47468 * 330.00046 * 19 17 15 23 23 C 1.43395 * 118.74984 * 291.51499 * 14 13 11 24 24 C 1.55330 * 116.33321 * 89.19749 * 23 14 13 25 25 C 1.55188 * 108.87098 * 319.47404 * 24 23 14 26 26 O 1.39647 * 110.57257 * 322.14323 * 25 24 23 27 27 C 1.39738 * 119.98979 * 0.25566 * 6 5 4 28 28 C 1.37604 * 119.99732 * 359.46413 * 27 6 5 29 29 H 4.51956 * 14.06512 * 0.02562 * 4 2 1 30 30 H 1.08002 * 119.99446 * 359.97438 * 4 3 2 31 31 H 1.08008 * 119.99849 * 180.02562 * 5 4 3 32 32 H 0.97001 * 120.00305 * 359.97438 * 9 7 6 33 33 H 1.09002 * 109.47675 * 59.99700 * 10 9 7 34 34 H 1.09002 * 109.46828 * 299.99784 * 10 9 7 35 35 H 1.09003 * 109.98761 * 297.23177 * 13 11 10 36 36 H 1.08997 * 109.98917 * 58.50466 * 13 11 10 37 37 H 0.97005 * 119.99888 * 180.02562 * 18 17 15 38 38 H 1.09001 * 108.06771 * 327.41335 * 23 14 13 39 39 H 1.08999 * 107.92020 * 210.85810 * 23 14 13 40 40 H 1.09002 * 109.56663 * 199.65863 * 24 23 14 41 41 H 1.09000 * 109.57011 * 79.29202 * 24 23 14 42 42 H 1.09005 * 109.25693 * 201.86168 * 25 24 23 43 43 H 1.09002 * 109.25918 * 82.42817 * 25 24 23 44 44 H 1.08000 * 119.99996 * 179.72248 * 27 6 5 45 45 H 1.07999 * 119.99771 * 180.27244 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3049 -0.8094 -0.8986 5 6 4.6808 -0.8084 -0.8991 6 6 5.3793 0.0023 -0.0003 7 6 6.8561 0.0030 -0.0003 8 8 7.4644 -0.7015 -0.7825 9 7 7.5296 0.7845 0.8669 10 6 8.9946 0.7856 0.8665 11 6 9.5041 1.7508 1.9387 12 1 9.1638 1.3966 2.9117 13 6 10.9732 1.7368 1.9225 14 7 11.4293 2.7327 2.9490 15 6 12.0513 2.3173 4.0961 16 1 12.7103 2.9887 4.6266 17 6 11.8347 1.0332 4.5771 18 7 10.7799 0.3520 4.1828 19 14 13.0405 0.2723 5.7840 20 1 12.6221 0.5951 7.1717 21 1 13.0587 -1.2014 5.6026 22 1 14.3992 0.8183 5.5370 23 6 11.1987 4.1271 2.7073 24 6 9.8460 4.6995 3.2127 25 6 8.7251 3.6649 2.9272 26 8 8.9394 3.0356 1.6991 27 6 4.6801 0.8080 0.9024 28 6 3.3041 0.8112 0.8987 29 1 -1.0501 -0.0001 -0.0009 30 1 2.7650 -1.4362 -1.5929 31 1 5.2211 -1.4343 -1.5940 32 1 7.0443 1.3469 1.4907 33 1 9.3576 1.1033 -0.1110 34 1 9.3587 -0.2193 1.0802 35 1 11.3392 0.7427 2.1794 36 1 11.3377 2.0246 0.9365 37 1 10.6284 -0.5452 4.5192 38 1 11.2591 4.2985 1.6325 39 1 12.0032 4.6876 3.1834 40 1 9.6255 5.6304 2.6901 41 1 9.9063 4.8861 4.2849 42 1 7.7619 4.1749 2.9067 43 1 8.7175 2.9155 3.7187 44 1 5.2197 1.4312 1.6000 45 1 2.7637 1.4371 1.5933 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073724239.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:05 Heat of formation + Delta-G solvation = 16.306914 kcal Electronic energy + Delta-G solvation = -27587.964093 eV Core-core repulsion = 23765.410921 eV Total energy + Delta-G solvation = -3822.553172 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.40008 -40.55372 -39.39856 -36.80577 -36.04705 -34.85091 -33.86523 -33.05137 -32.05594 -31.44930 -30.18453 -27.36817 -27.06126 -25.35383 -24.14560 -23.50557 -22.40439 -21.66687 -21.28246 -19.95731 -19.14229 -18.78672 -17.70543 -17.27865 -16.67318 -16.61977 -16.37309 -16.17917 -15.99803 -15.78185 -15.52671 -15.30232 -14.83730 -14.70636 -14.35388 -14.25833 -14.14377 -13.84003 -13.56524 -13.29771 -13.26719 -12.94638 -12.61599 -12.52113 -12.40295 -12.31130 -12.13196 -11.92222 -11.77768 -11.44350 -11.37504 -11.21482 -11.10587 -10.55327 -10.28313 -10.17810 -10.10577 -9.59214 -8.71064 -7.89299 -5.29608 -0.53862 0.31118 1.47117 1.47831 1.51991 1.58999 1.76387 2.12081 2.27812 2.52676 2.97194 3.10772 3.27558 3.28424 3.50427 3.68944 3.80816 3.89576 4.15283 4.25152 4.27705 4.38041 4.40611 4.42468 4.54278 4.56642 4.73588 4.78253 4.80263 4.90621 4.94762 4.96133 5.07964 5.19152 5.19696 5.23506 5.31433 5.33288 5.35059 5.37680 5.42369 5.50590 5.68877 5.75433 6.36862 6.49136 6.51962 6.55771 7.10939 7.13599 7.83851 8.36628 9.16585 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.016766 B = 0.002733 C = 0.002630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.602094 B =10243.863561 C =10645.504160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.207 4.207 3 C 0.028 3.972 4 C -0.105 4.105 5 C -0.067 4.067 6 C -0.140 4.140 7 C 0.550 3.450 8 O -0.583 6.583 9 N -0.700 5.700 10 C 0.132 3.868 11 C 0.080 3.920 12 H 0.085 0.915 13 C 0.144 3.856 14 N -0.601 5.601 15 C -0.262 4.262 16 H 0.063 0.937 17 C -0.037 4.037 18 N -0.917 5.917 19 Si 0.958 3.042 20 H -0.288 1.288 21 H -0.294 1.294 22 H -0.279 1.279 23 C 0.153 3.847 24 C -0.165 4.165 25 C 0.066 3.934 26 O -0.366 6.366 27 C -0.079 4.079 28 C -0.104 4.104 29 H 0.262 0.738 30 H 0.152 0.848 31 H 0.137 0.863 32 H 0.410 0.590 33 H 0.060 0.940 34 H 0.064 0.936 35 H 0.078 0.922 36 H 0.025 0.975 37 H 0.251 0.749 38 H 0.034 0.966 39 H 0.030 0.970 40 H 0.078 0.922 41 H 0.054 0.946 42 H 0.089 0.911 43 H 0.037 0.963 44 H 0.147 0.853 45 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.199 2.221 -6.291 20.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.207 4.207 3 C 0.028 3.972 4 C -0.123 4.123 5 C -0.086 4.086 6 C -0.143 4.143 7 C 0.339 3.661 8 O -0.465 6.465 9 N -0.350 5.350 10 C 0.007 3.993 11 C 0.021 3.979 12 H 0.103 0.897 13 C 0.019 3.981 14 N -0.322 5.322 15 C -0.392 4.392 16 H 0.081 0.919 17 C -0.233 4.233 18 N -0.563 5.563 19 Si 0.788 3.212 20 H -0.215 1.215 21 H -0.221 1.221 22 H -0.205 1.205 23 C 0.026 3.974 24 C -0.206 4.206 25 C -0.011 4.011 26 O -0.285 6.285 27 C -0.097 4.097 28 C -0.122 4.122 29 H 0.278 0.722 30 H 0.170 0.830 31 H 0.155 0.845 32 H 0.247 0.753 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.097 0.903 36 H 0.043 0.957 37 H 0.060 0.940 38 H 0.053 0.947 39 H 0.049 0.951 40 H 0.097 0.903 41 H 0.073 0.927 42 H 0.107 0.893 43 H 0.055 0.945 44 H 0.165 0.835 45 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -18.754 1.675 -6.961 20.074 hybrid contribution 0.803 -0.427 1.294 1.582 sum -17.952 1.249 -5.666 18.866 Atomic orbital electron populations 1.25854 0.96502 0.96153 0.96250 1.20243 0.92425 1.04017 1.03991 1.16404 0.87644 0.96840 0.96326 1.21338 0.93009 0.99047 0.98914 1.21250 0.94119 0.96431 0.96756 1.20021 0.91497 1.02024 1.00787 1.18668 0.88153 0.79227 0.80062 1.90733 1.70891 1.43443 1.41403 1.45720 1.07279 1.44270 1.37764 1.21439 0.79526 0.99101 0.99207 1.21754 0.95609 0.82187 0.98346 0.89686 1.20663 0.92604 0.95473 0.89323 1.44224 1.67914 1.01371 1.18703 1.19385 1.19530 0.98377 1.01931 0.91931 1.25468 0.98149 0.99332 1.00352 1.69985 1.26140 1.12193 1.47942 0.85425 0.79602 0.77200 0.78992 1.21468 1.22055 1.20486 1.20498 0.94606 0.84796 0.97549 1.23495 0.97597 0.98869 1.00629 1.22428 0.97645 0.95399 0.85645 1.87516 1.81599 1.30261 1.29091 1.21422 0.94598 0.96865 0.96843 1.21372 0.93337 0.98791 0.98655 0.72161 0.83032 0.84543 0.75282 0.92124 0.91783 0.90347 0.95731 0.93993 0.94724 0.95138 0.90312 0.92745 0.89305 0.94468 0.83520 0.82762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.50 19.25 74.32 1.43 -0.07 16 2 C -0.21 -3.56 13.23 30.02 0.40 -3.17 16 3 C 0.03 0.55 5.73 -21.32 -0.12 0.43 16 4 C -0.11 -2.07 9.73 22.48 0.22 -1.85 16 5 C -0.07 -1.60 9.57 22.48 0.22 -1.38 16 6 C -0.14 -3.70 5.88 -20.05 -0.12 -3.82 16 7 C 0.55 18.32 7.77 86.74 0.67 18.99 16 8 O -0.58 -23.51 16.33 -3.96 -0.06 -23.58 16 9 N -0.70 -22.53 5.35 -466.12 -2.49 -25.03 16 10 C 0.13 4.94 5.26 86.38 0.45 5.40 16 11 C 0.08 3.22 2.01 28.71 0.06 3.27 16 12 H 0.09 3.87 5.25 -2.39 -0.01 3.86 16 13 C 0.14 6.56 4.70 83.79 0.39 6.96 16 14 N -0.60 -28.60 2.62 -706.06 -1.85 -30.45 16 15 C -0.26 -13.65 9.61 84.03 0.81 -12.84 16 16 H 0.06 3.26 7.87 -2.91 -0.02 3.24 16 17 C -0.04 -1.90 4.92 84.86 0.42 -1.49 16 18 N -0.92 -48.24 9.57 21.65 0.21 -48.03 16 19 Si 0.96 43.05 29.60 68.60 2.03 45.09 16 20 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16 21 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 22 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 23 C 0.15 6.27 5.33 87.75 0.47 6.74 16 24 C -0.16 -5.70 6.75 32.14 0.22 -5.48 16 25 C 0.07 2.28 6.38 72.73 0.46 2.74 16 26 O -0.37 -13.46 9.34 -137.26 -1.28 -14.74 16 27 C -0.08 -1.65 9.52 22.48 0.21 -1.44 16 28 C -0.10 -1.91 9.73 22.48 0.22 -1.70 16 29 H 0.26 0.54 7.80 -4.41 -0.03 0.50 16 30 H 0.15 2.27 8.06 -2.91 -0.02 2.24 16 31 H 0.14 3.32 7.64 -2.91 -0.02 3.30 16 32 H 0.41 11.39 6.20 -92.71 -0.58 10.82 16 33 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 34 H 0.06 2.60 8.14 -2.39 -0.02 2.58 16 35 H 0.08 3.98 6.03 -2.39 -0.01 3.97 16 36 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.25 13.06 8.31 -92.70 -0.77 12.29 16 38 H 0.03 1.37 7.99 -2.39 -0.02 1.36 16 39 H 0.03 1.24 7.95 -2.39 -0.02 1.22 16 40 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 41 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 42 H 0.09 2.42 8.14 -2.38 -0.02 2.40 16 43 H 0.04 1.49 6.66 -2.39 -0.02 1.47 16 44 H 0.15 2.58 6.38 -2.91 -0.02 2.56 16 45 H 0.15 2.10 8.06 -2.91 -0.02 2.08 16 Total: -1.00 -63.92 372.56 3.39 -60.53 By element: Atomic # 1 Polarization: 24.48 SS G_CDS: 0.43 Total: 24.91 kcal Atomic # 6 Polarization: 4.90 SS G_CDS: 6.41 Total: 11.30 kcal Atomic # 7 Polarization: -99.37 SS G_CDS: -4.14 Total: -103.51 kcal Atomic # 8 Polarization: -36.98 SS G_CDS: -1.35 Total: -38.32 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.09 kcal Total: -63.92 3.39 -60.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073724239.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.837 kcal (2) G-P(sol) polarization free energy of solvation -63.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.530 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds