Wall clock time and date at job start Tue Mar 31 2020 14:47:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.43207 * 179.97438 * 2 1 4 4 C 1.39716 * 119.99529 * 229.85581 * 3 2 1 5 5 C 1.37600 * 120.00071 * 179.76298 * 4 3 2 6 6 C 1.39741 * 119.99492 * 0.51770 * 5 4 3 7 7 C 1.47695 * 120.00010 * 179.76212 * 6 5 4 8 8 O 1.21577 * 119.99395 * 179.97438 * 7 6 5 9 9 N 1.34774 * 120.00101 * 359.97438 * 7 6 5 10 10 C 1.46500 * 119.99973 * 179.97438 * 9 7 6 11 11 C 1.52993 * 109.47102 * 180.02562 * 10 9 7 12 12 H 1.09006 * 109.46600 * 304.99706 * 11 10 9 13 13 C 1.54811 * 109.46913 * 185.00722 * 11 10 9 14 14 N 1.45120 * 109.53871 * 172.10581 * 13 11 10 15 15 C 1.36936 * 118.76115 * 269.29249 * 14 13 11 16 16 H 1.07999 * 119.99911 * 26.09048 * 15 14 13 17 17 C 1.38810 * 119.99785 * 206.09589 * 15 14 13 18 18 N 1.31622 * 120.00494 * 15.46418 * 17 15 14 19 19 Si 1.86799 * 120.00048 * 195.46562 * 17 15 14 20 20 H 1.48508 * 109.47243 * 94.96115 * 19 17 15 21 21 H 1.48494 * 109.47645 * 214.96548 * 19 17 15 22 22 H 1.48503 * 109.47032 * 334.96610 * 19 17 15 23 23 C 1.47514 * 122.48187 * 89.28867 * 14 13 11 24 24 C 1.53578 * 111.02884 * 318.37301 * 23 14 13 25 25 C 1.51541 * 109.58117 * 320.02265 * 24 23 14 26 26 O 1.38011 * 109.47363 * 64.99269 * 11 10 9 27 27 C 1.39740 * 119.99385 * 359.73606 * 6 5 4 28 28 C 1.37597 * 120.00124 * 0.02562 * 27 6 5 29 29 H 4.51947 * 14.06447 * 359.97438 * 4 2 1 30 30 H 1.08000 * 119.99341 * 0.02562 * 4 3 2 31 31 H 1.08002 * 120.00004 * 180.27963 * 5 4 3 32 32 H 0.96996 * 119.99754 * 359.97438 * 9 7 6 33 33 H 1.09001 * 109.46796 * 299.99953 * 10 9 7 34 34 H 1.09006 * 109.46695 * 59.99711 * 10 9 7 35 35 H 1.09007 * 109.45399 * 292.12781 * 13 11 10 36 36 H 1.08995 * 109.46327 * 52.08808 * 13 11 10 37 37 H 0.96993 * 120.00217 * 179.97438 * 18 17 15 38 38 H 1.09004 * 109.16915 * 197.97701 * 23 14 13 39 39 H 1.08999 * 109.16585 * 78.77308 * 23 14 13 40 40 H 1.08996 * 109.45642 * 199.98812 * 24 23 14 41 41 H 1.09003 * 109.43026 * 80.04179 * 24 23 14 42 42 H 1.09007 * 109.58837 * 331.61621 * 25 24 23 43 43 H 1.08994 * 109.59017 * 211.18118 * 25 24 23 44 44 H 1.08008 * 120.00183 * 180.02562 * 27 6 5 45 45 H 1.07999 * 120.00337 * 180.02562 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6061 0.0006 0.0000 4 6 3.3042 0.7811 0.9250 5 6 4.6802 0.7780 0.9283 6 6 5.3793 0.0027 -0.0006 7 6 6.8562 0.0034 -0.0006 8 8 7.4644 -0.6716 -0.8085 9 7 7.5298 0.7522 0.8949 10 6 8.9948 0.7524 0.8953 11 6 9.5043 1.6773 2.0024 12 1 9.0695 2.6689 1.8761 13 6 11.0472 1.7765 1.9225 14 7 11.5167 2.7926 2.8461 15 6 11.6459 4.0804 2.3989 16 1 11.0421 4.4287 1.5739 17 6 12.5529 4.9382 3.0058 18 7 13.4928 4.4545 3.7900 19 14 12.4395 6.7791 2.7098 20 1 11.6532 7.4085 3.8011 21 1 13.8052 7.3615 2.6843 22 1 11.7697 7.0308 1.4085 23 6 11.8600 2.4906 4.2486 24 6 10.8375 1.5287 4.8714 25 6 9.4429 1.9021 4.4107 26 8 9.1389 1.1680 3.2319 27 6 4.6809 -0.7737 -0.9291 28 6 3.3049 -0.7743 -0.9291 29 1 -1.0499 0.0000 -0.0008 30 1 2.7638 1.3835 1.6401 31 1 5.2198 1.3778 1.6462 32 1 7.0445 1.2909 1.5392 33 1 9.3582 -0.2599 1.0721 34 1 9.3582 1.1056 -0.0698 35 1 11.4870 0.8146 2.1864 36 1 11.3418 2.0441 0.9078 37 1 14.1268 5.0539 4.2139 38 1 11.8739 3.4179 4.8213 39 1 12.8490 2.0339 4.2845 40 1 10.8909 1.5958 5.9579 41 1 11.0621 0.5088 4.5591 42 1 9.4024 2.9701 4.1966 43 1 8.7223 1.6559 5.1905 44 1 5.2211 -1.3734 -1.6469 45 1 2.7651 -1.3747 -1.6464 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073724242.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:09 Heat of formation + Delta-G solvation = 25.275465 kcal Electronic energy + Delta-G solvation = -27034.977001 eV Core-core repulsion = 23212.812735 eV Total energy + Delta-G solvation = -3822.164267 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.36209 -39.12071 -38.39954 -35.31464 -34.71338 -34.17497 -32.29914 -31.55434 -31.30333 -30.71221 -28.51509 -25.86588 -25.42193 -24.35760 -23.02332 -22.49363 -20.96209 -20.58785 -19.58953 -19.32286 -18.06796 -17.01384 -16.38894 -16.10175 -15.98706 -15.40513 -15.28484 -14.99811 -14.84938 -14.66827 -14.18556 -13.92589 -13.73305 -13.49214 -13.35338 -13.01772 -12.72834 -12.51246 -12.29246 -12.12062 -11.73744 -11.47688 -11.40215 -11.23274 -11.01092 -10.90727 -10.84399 -10.67584 -10.26392 -10.01087 -9.89012 -9.79219 -9.72340 -9.39220 -9.08962 -8.86111 -8.81104 -8.46901 -6.79473 -5.87300 -3.32444 0.22557 1.02434 2.28404 2.32422 3.10611 3.16131 3.31068 3.38976 3.40011 3.72112 3.81835 4.12390 4.41030 4.48389 4.54432 4.66091 4.94866 5.13216 5.15498 5.17890 5.32006 5.48469 5.54275 5.59876 5.63308 5.67438 5.83733 5.93379 5.95337 5.98032 6.03717 6.04796 6.13846 6.22732 6.31834 6.43564 6.48651 6.55486 6.67426 6.71621 6.79277 7.09804 7.32043 7.52274 7.60374 7.73575 8.16126 8.20456 8.35779 9.13619 9.78278 10.24303 11.20176 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.017648 B = 0.002388 C = 0.002329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.208447 B =11724.402198 C =12017.686054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.153 4.153 3 C 0.028 3.972 4 C -0.102 4.102 5 C -0.084 4.084 6 C -0.120 4.120 7 C 0.553 3.447 8 O -0.541 6.541 9 N -0.712 5.712 10 C 0.132 3.868 11 C 0.066 3.934 12 H 0.052 0.948 13 C 0.128 3.872 14 N -0.591 5.591 15 C -0.266 4.266 16 H 0.067 0.933 17 C 0.006 3.994 18 N -0.902 5.902 19 Si 0.902 3.098 20 H -0.287 1.287 21 H -0.290 1.290 22 H -0.278 1.278 23 C 0.177 3.823 24 C -0.177 4.177 25 C 0.088 3.912 26 O -0.396 6.396 27 C -0.060 4.060 28 C -0.104 4.104 29 H 0.225 0.775 30 H 0.133 0.867 31 H 0.134 0.866 32 H 0.402 0.598 33 H 0.075 0.925 34 H 0.082 0.918 35 H 0.044 0.956 36 H 0.056 0.944 37 H 0.254 0.746 38 H 0.075 0.925 39 H 0.027 0.973 40 H 0.060 0.940 41 H 0.058 0.942 42 H 0.061 0.939 43 H 0.070 0.930 44 H 0.143 0.857 45 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.119 -8.232 -3.598 22.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.153 4.153 3 C 0.028 3.972 4 C -0.120 4.120 5 C -0.102 4.102 6 C -0.123 4.123 7 C 0.339 3.661 8 O -0.419 6.419 9 N -0.363 5.363 10 C 0.008 3.992 11 C 0.004 3.996 12 H 0.070 0.930 13 C -0.001 4.001 14 N -0.312 5.312 15 C -0.395 4.395 16 H 0.085 0.915 17 C -0.193 4.193 18 N -0.546 5.546 19 Si 0.732 3.268 20 H -0.214 1.214 21 H -0.217 1.217 22 H -0.203 1.203 23 C 0.052 3.948 24 C -0.216 4.216 25 C 0.012 3.988 26 O -0.315 6.315 27 C -0.079 4.079 28 C -0.122 4.122 29 H 0.242 0.758 30 H 0.151 0.849 31 H 0.152 0.848 32 H 0.238 0.762 33 H 0.093 0.907 34 H 0.100 0.900 35 H 0.062 0.938 36 H 0.074 0.926 37 H 0.064 0.936 38 H 0.094 0.906 39 H 0.045 0.955 40 H 0.079 0.921 41 H 0.076 0.924 42 H 0.080 0.920 43 H 0.088 0.912 44 H 0.160 0.840 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -20.528 -8.773 -4.045 22.687 hybrid contribution -0.184 1.596 0.345 1.643 sum -20.712 -7.177 -3.700 22.230 Atomic orbital electron populations 1.24932 0.95789 0.98909 0.98978 1.20034 0.92024 1.01629 1.01593 1.16174 0.86684 0.97758 0.96632 1.21132 0.93782 0.98733 0.98370 1.21293 0.94080 0.97438 0.97408 1.20169 0.93377 1.00273 0.98449 1.18199 0.86885 0.79838 0.81141 1.90779 1.69786 1.42299 1.39055 1.45925 1.08097 1.47106 1.35197 1.21483 0.78240 1.01100 0.98360 1.22639 0.99126 0.95039 0.82812 0.93011 1.21406 0.90779 0.93045 0.94919 1.43837 1.76392 1.05020 1.05991 1.19236 1.16555 0.87028 1.16698 0.91534 1.25055 0.95305 0.98712 1.00184 1.70070 1.16354 1.33543 1.34599 0.86273 0.77013 0.85476 0.78003 1.21445 1.21690 1.20338 1.21000 0.92928 0.96952 0.83931 1.22773 0.97474 1.01302 1.00043 1.22017 0.95309 0.96528 0.84943 1.86073 1.81012 1.51030 1.13412 1.21212 0.93343 0.96377 0.96925 1.21174 0.93771 0.98929 0.98359 0.75797 0.84890 0.84777 0.76234 0.90712 0.89958 0.93760 0.92564 0.93550 0.90633 0.95451 0.92098 0.92361 0.92040 0.91234 0.83959 0.84908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.16 19.25 29.55 0.57 -0.59 16 2 C -0.15 -1.37 13.23 -38.83 -0.51 -1.89 16 3 C 0.03 0.26 5.73 -106.86 -0.61 -0.35 16 4 C -0.10 -0.91 9.73 -39.26 -0.38 -1.29 16 5 C -0.08 -0.79 9.52 -39.25 -0.37 -1.16 16 6 C -0.12 -1.37 5.88 -104.91 -0.62 -1.99 16 7 C 0.55 7.77 7.77 -12.40 -0.10 7.68 16 8 O -0.54 -9.34 16.33 5.30 0.09 -9.25 16 9 N -0.71 -9.45 5.44 -61.30 -0.33 -9.78 16 10 C 0.13 1.97 5.34 -4.05 -0.02 1.95 16 11 C 0.07 1.11 2.68 -25.78 -0.07 1.04 16 12 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 13 C 0.13 2.56 5.12 -3.83 -0.02 2.55 16 14 N -0.59 -14.00 2.23 -172.01 -0.38 -14.38 16 15 C -0.27 -6.92 9.46 -15.06 -0.14 -7.06 16 16 H 0.07 1.71 7.88 -52.49 -0.41 1.30 16 17 C 0.01 0.17 4.89 -17.43 -0.09 0.09 16 18 N -0.90 -25.34 11.00 55.49 0.61 -24.73 16 19 Si 0.90 21.05 29.58 -169.99 -5.03 16.02 16 20 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 22 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 23 C 0.18 4.06 4.70 -3.19 -0.01 4.05 16 24 C -0.18 -3.23 5.79 -27.17 -0.16 -3.39 16 25 C 0.09 1.50 6.37 36.42 0.23 1.73 16 26 O -0.40 -6.75 9.38 -26.52 -0.25 -6.99 16 27 C -0.06 -0.63 9.57 -39.25 -0.38 -1.00 16 28 C -0.10 -0.95 9.73 -39.26 -0.38 -1.33 16 29 H 0.23 0.64 7.80 -54.10 -0.42 0.22 16 30 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 31 H 0.13 1.03 6.38 -52.49 -0.34 0.69 16 32 H 0.40 4.58 6.47 -40.82 -0.26 4.32 16 33 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.04 0.88 8.11 -51.93 -0.42 0.46 16 36 H 0.06 1.13 7.98 -51.93 -0.41 0.71 16 37 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 38 H 0.08 1.92 6.37 -51.93 -0.33 1.59 16 39 H 0.03 0.69 8.04 -51.93 -0.42 0.27 16 40 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 41 H 0.06 1.07 8.01 -51.93 -0.42 0.65 16 42 H 0.06 1.16 7.40 -51.93 -0.38 0.78 16 43 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 44 H 0.14 1.46 7.64 -52.48 -0.40 1.05 16 45 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 LS Contribution 377.26 15.07 5.69 5.69 Total: -1.00 -31.26 377.26 -8.99 -40.25 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: -6.31 Total: 4.15 kcal Atomic # 6 Polarization: 2.10 SS G_CDS: -3.06 Total: -0.97 kcal Atomic # 7 Polarization: -48.79 SS G_CDS: -0.11 Total: -48.89 kcal Atomic # 8 Polarization: -16.08 SS G_CDS: -0.16 Total: -16.24 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.03 Total: 16.02 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -31.26 -8.99 -40.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073724242.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.521 kcal (2) G-P(sol) polarization free energy of solvation -31.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.245 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds