Wall clock time and date at job start Tue Mar 31 2020 14:47:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.43207 * 179.97438 * 2 1 4 4 C 1.39716 * 119.99529 * 229.85581 * 3 2 1 5 5 C 1.37600 * 120.00071 * 179.76298 * 4 3 2 6 6 C 1.39741 * 119.99492 * 0.51770 * 5 4 3 7 7 C 1.47695 * 120.00010 * 179.76212 * 6 5 4 8 8 O 1.21577 * 119.99395 * 179.97438 * 7 6 5 9 9 N 1.34774 * 120.00101 * 359.97438 * 7 6 5 10 10 C 1.46500 * 119.99973 * 179.97438 * 9 7 6 11 11 C 1.52993 * 109.47102 * 180.02562 * 10 9 7 12 12 H 1.09006 * 109.46600 * 304.99706 * 11 10 9 13 13 C 1.54811 * 109.46913 * 185.00722 * 11 10 9 14 14 N 1.45120 * 109.53871 * 172.10581 * 13 11 10 15 15 C 1.36936 * 118.76115 * 269.29249 * 14 13 11 16 16 H 1.07999 * 119.99911 * 26.09048 * 15 14 13 17 17 C 1.38810 * 119.99785 * 206.09589 * 15 14 13 18 18 N 1.31622 * 120.00494 * 15.46418 * 17 15 14 19 19 Si 1.86799 * 120.00048 * 195.46562 * 17 15 14 20 20 H 1.48508 * 109.47243 * 94.96115 * 19 17 15 21 21 H 1.48494 * 109.47645 * 214.96548 * 19 17 15 22 22 H 1.48503 * 109.47032 * 334.96610 * 19 17 15 23 23 C 1.47514 * 122.48187 * 89.28867 * 14 13 11 24 24 C 1.53578 * 111.02884 * 318.37301 * 23 14 13 25 25 C 1.51541 * 109.58117 * 320.02265 * 24 23 14 26 26 O 1.38011 * 109.47363 * 64.99269 * 11 10 9 27 27 C 1.39740 * 119.99385 * 359.73606 * 6 5 4 28 28 C 1.37597 * 120.00124 * 0.02562 * 27 6 5 29 29 H 4.51947 * 14.06447 * 359.97438 * 4 2 1 30 30 H 1.08000 * 119.99341 * 0.02562 * 4 3 2 31 31 H 1.08002 * 120.00004 * 180.27963 * 5 4 3 32 32 H 0.96996 * 119.99754 * 359.97438 * 9 7 6 33 33 H 1.09001 * 109.46796 * 299.99953 * 10 9 7 34 34 H 1.09006 * 109.46695 * 59.99711 * 10 9 7 35 35 H 1.09007 * 109.45399 * 292.12781 * 13 11 10 36 36 H 1.08995 * 109.46327 * 52.08808 * 13 11 10 37 37 H 0.96993 * 120.00217 * 179.97438 * 18 17 15 38 38 H 1.09004 * 109.16915 * 197.97701 * 23 14 13 39 39 H 1.08999 * 109.16585 * 78.77308 * 23 14 13 40 40 H 1.08996 * 109.45642 * 199.98812 * 24 23 14 41 41 H 1.09003 * 109.43026 * 80.04179 * 24 23 14 42 42 H 1.09007 * 109.58837 * 331.61621 * 25 24 23 43 43 H 1.08994 * 109.59017 * 211.18118 * 25 24 23 44 44 H 1.08008 * 120.00183 * 180.02562 * 27 6 5 45 45 H 1.07999 * 120.00337 * 180.02562 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6061 0.0006 0.0000 4 6 3.3042 0.7811 0.9250 5 6 4.6802 0.7780 0.9283 6 6 5.3793 0.0027 -0.0006 7 6 6.8562 0.0034 -0.0006 8 8 7.4644 -0.6716 -0.8085 9 7 7.5298 0.7522 0.8949 10 6 8.9948 0.7524 0.8953 11 6 9.5043 1.6773 2.0024 12 1 9.0695 2.6689 1.8761 13 6 11.0472 1.7765 1.9225 14 7 11.5167 2.7926 2.8461 15 6 11.6459 4.0804 2.3989 16 1 11.0421 4.4287 1.5739 17 6 12.5529 4.9382 3.0058 18 7 13.4928 4.4545 3.7900 19 14 12.4395 6.7791 2.7098 20 1 11.6532 7.4085 3.8011 21 1 13.8052 7.3615 2.6843 22 1 11.7697 7.0308 1.4085 23 6 11.8600 2.4906 4.2486 24 6 10.8375 1.5287 4.8714 25 6 9.4429 1.9021 4.4107 26 8 9.1389 1.1680 3.2319 27 6 4.6809 -0.7737 -0.9291 28 6 3.3049 -0.7743 -0.9291 29 1 -1.0499 0.0000 -0.0008 30 1 2.7638 1.3835 1.6401 31 1 5.2198 1.3778 1.6462 32 1 7.0445 1.2909 1.5392 33 1 9.3582 -0.2599 1.0721 34 1 9.3582 1.1056 -0.0698 35 1 11.4870 0.8146 2.1864 36 1 11.3418 2.0441 0.9078 37 1 14.1268 5.0539 4.2139 38 1 11.8739 3.4179 4.8213 39 1 12.8490 2.0339 4.2845 40 1 10.8909 1.5958 5.9579 41 1 11.0621 0.5088 4.5591 42 1 9.4024 2.9701 4.1966 43 1 8.7223 1.6559 5.1905 44 1 5.2211 -1.3734 -1.6469 45 1 2.7651 -1.3747 -1.6464 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073724242.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:08 Heat of formation + Delta-G solvation = 7.343420 kcal Electronic energy + Delta-G solvation = -27035.754593 eV Core-core repulsion = 23212.812735 eV Total energy + Delta-G solvation = -3822.941858 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.35923 -40.45279 -39.40939 -37.00915 -36.02269 -34.84409 -33.68873 -33.42832 -32.08862 -31.53921 -29.97446 -27.39223 -27.07885 -25.48853 -24.20025 -23.48204 -22.31526 -21.74854 -21.27989 -19.95115 -19.06449 -18.83423 -17.67000 -17.42389 -16.95812 -16.64230 -16.54198 -16.15491 -16.11224 -15.78645 -15.47884 -15.41590 -14.78594 -14.69514 -14.40763 -14.30262 -14.14546 -13.73677 -13.61614 -13.27811 -13.12739 -13.00408 -12.79291 -12.51615 -12.43033 -12.36496 -12.13098 -12.05951 -11.76584 -11.48378 -11.44045 -11.31527 -11.13632 -10.54029 -10.28292 -10.20222 -10.09474 -9.58837 -8.73100 -7.89577 -5.37009 -0.53265 0.32265 1.45503 1.47211 1.47936 1.55925 1.76159 2.07634 2.27934 2.49266 2.75610 2.98005 3.25376 3.28058 3.55306 3.68653 3.81695 3.90484 4.06716 4.13652 4.22272 4.26203 4.35731 4.43272 4.53182 4.56065 4.58537 4.66964 4.74871 4.82634 4.90946 4.93382 4.95978 5.14579 5.19126 5.23243 5.24796 5.32349 5.34139 5.36885 5.47126 5.61456 5.75514 5.76270 6.35318 6.48049 6.55603 6.74444 7.12614 7.14168 7.86150 8.27319 9.16112 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.017648 B = 0.002388 C = 0.002329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.208447 B =11724.402198 C =12017.686054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.207 4.207 3 C 0.027 3.973 4 C -0.105 4.105 5 C -0.077 4.077 6 C -0.141 4.141 7 C 0.554 3.446 8 O -0.580 6.580 9 N -0.705 5.705 10 C 0.141 3.859 11 C 0.086 3.914 12 H 0.048 0.952 13 C 0.123 3.877 14 N -0.605 5.605 15 C -0.267 4.267 16 H 0.069 0.931 17 C -0.047 4.047 18 N -0.935 5.935 19 Si 0.965 3.035 20 H -0.284 1.284 21 H -0.298 1.298 22 H -0.269 1.269 23 C 0.185 3.815 24 C -0.165 4.165 25 C 0.091 3.909 26 O -0.392 6.392 27 C -0.066 4.066 28 C -0.107 4.107 29 H 0.261 0.739 30 H 0.153 0.847 31 H 0.152 0.848 32 H 0.413 0.587 33 H 0.069 0.931 34 H 0.082 0.918 35 H 0.043 0.957 36 H 0.052 0.948 37 H 0.249 0.751 38 H 0.046 0.954 39 H -0.008 1.008 40 H 0.084 0.916 41 H 0.060 0.940 42 H 0.041 0.959 43 H 0.109 0.891 44 H 0.137 0.863 45 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.643 -8.147 -3.288 26.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.207 4.207 3 C 0.027 3.973 4 C -0.123 4.123 5 C -0.096 4.096 6 C -0.144 4.144 7 C 0.343 3.657 8 O -0.461 6.461 9 N -0.356 5.356 10 C 0.017 3.983 11 C 0.024 3.976 12 H 0.066 0.934 13 C -0.005 4.005 14 N -0.327 5.327 15 C -0.398 4.398 16 H 0.086 0.914 17 C -0.243 4.243 18 N -0.581 5.581 19 Si 0.793 3.207 20 H -0.211 1.211 21 H -0.225 1.225 22 H -0.193 1.193 23 C 0.060 3.940 24 C -0.204 4.204 25 C 0.016 3.984 26 O -0.311 6.311 27 C -0.085 4.085 28 C -0.125 4.125 29 H 0.277 0.723 30 H 0.171 0.829 31 H 0.169 0.831 32 H 0.250 0.750 33 H 0.087 0.913 34 H 0.100 0.900 35 H 0.061 0.939 36 H 0.070 0.930 37 H 0.059 0.941 38 H 0.065 0.935 39 H 0.010 0.990 40 H 0.103 0.897 41 H 0.078 0.922 42 H 0.060 0.940 43 H 0.127 0.873 44 H 0.155 0.845 45 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -24.095 -8.695 -3.735 25.887 hybrid contribution 0.792 1.512 0.222 1.721 sum -23.304 -7.184 -3.513 24.638 Atomic orbital electron populations 1.25853 0.96538 0.96212 0.96361 1.20289 0.92510 1.03957 1.03918 1.16419 0.87547 0.97100 0.96226 1.21383 0.93564 0.98750 0.98611 1.21447 0.94450 0.96768 0.96894 1.20022 0.91690 1.02375 1.00304 1.18578 0.87977 0.78902 0.80289 1.90753 1.70799 1.43988 1.40607 1.45775 1.07261 1.47158 1.35413 1.21243 0.79455 1.00143 0.97442 1.22287 0.96336 0.95393 0.83534 0.93447 1.21566 0.93013 0.92000 0.93959 1.44034 1.76734 1.05129 1.06818 1.19524 1.15798 0.88169 1.16263 0.91363 1.25778 0.95312 1.02535 1.00629 1.70231 1.17295 1.34512 1.36014 0.85289 0.76430 0.80759 0.78193 1.21076 1.22466 1.19322 1.20777 0.92991 0.96370 0.83829 1.22631 0.96901 0.99715 1.01130 1.22083 0.95319 0.95361 0.85677 1.86104 1.80593 1.51007 1.13372 1.21253 0.94016 0.96419 0.96845 1.21333 0.93178 0.99161 0.98806 0.72282 0.82889 0.83083 0.74955 0.91277 0.90008 0.93870 0.93010 0.94136 0.93524 0.98953 0.89720 0.92151 0.94033 0.87299 0.84505 0.83257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.36 19.25 74.32 1.43 0.07 16 2 C -0.21 -3.23 13.23 30.02 0.40 -2.83 16 3 C 0.03 0.48 5.73 -21.32 -0.12 0.35 16 4 C -0.11 -1.65 9.73 22.48 0.22 -1.43 16 5 C -0.08 -1.32 9.52 22.48 0.21 -1.10 16 6 C -0.14 -3.13 5.88 -20.05 -0.12 -3.25 16 7 C 0.55 15.40 7.77 86.74 0.67 16.08 16 8 O -0.58 -20.33 16.33 -3.96 -0.06 -20.39 16 9 N -0.70 -17.94 5.44 -466.12 -2.54 -20.47 16 10 C 0.14 4.14 5.34 86.38 0.46 4.60 16 11 C 0.09 2.84 2.68 31.21 0.08 2.92 16 12 H 0.05 1.64 8.14 -2.38 -0.02 1.62 16 13 C 0.12 4.94 5.12 87.26 0.45 5.39 16 14 N -0.61 -29.08 2.23 -698.12 -1.55 -30.63 16 15 C -0.27 -14.09 9.46 84.03 0.80 -13.29 16 16 H 0.07 3.51 7.88 -2.91 -0.02 3.48 16 17 C -0.05 -2.55 4.89 84.86 0.41 -2.13 16 18 N -0.93 -54.14 11.00 21.65 0.24 -53.91 16 19 Si 0.96 43.77 29.58 68.60 2.03 45.80 16 20 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 21 H -0.30 -13.77 7.11 99.48 0.71 -13.06 16 22 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 23 C 0.19 8.71 4.70 86.38 0.41 9.11 16 24 C -0.16 -5.84 5.79 30.31 0.18 -5.66 16 25 C 0.09 2.91 6.37 71.50 0.46 3.36 16 26 O -0.39 -12.56 9.38 -117.81 -1.11 -13.66 16 27 C -0.07 -1.38 9.57 22.48 0.22 -1.16 16 28 C -0.11 -1.85 9.73 22.48 0.22 -1.63 16 29 H 0.26 0.27 7.80 -4.42 -0.03 0.24 16 30 H 0.15 1.72 8.06 -2.91 -0.02 1.69 16 31 H 0.15 1.95 6.38 -2.91 -0.02 1.93 16 32 H 0.41 8.62 6.47 -92.71 -0.60 8.02 16 33 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 34 H 0.08 2.42 8.14 -2.38 -0.02 2.40 16 35 H 0.04 1.73 8.11 -2.38 -0.02 1.71 16 36 H 0.05 2.10 7.98 -2.39 -0.02 2.08 16 37 H 0.25 14.06 8.31 -92.71 -0.77 13.29 16 38 H 0.05 2.44 6.37 -2.38 -0.02 2.43 16 39 H -0.01 -0.41 8.04 -2.39 -0.02 -0.43 16 40 H 0.08 2.60 8.14 -2.39 -0.02 2.59 16 41 H 0.06 2.13 8.01 -2.39 -0.02 2.11 16 42 H 0.04 1.51 7.40 -2.38 -0.02 1.49 16 43 H 0.11 2.69 8.14 -2.39 -0.02 2.67 16 44 H 0.14 2.89 7.64 -2.91 -0.02 2.87 16 45 H 0.15 1.95 8.06 -2.91 -0.02 1.93 16 Total: -1.00 -69.31 377.26 3.77 -65.54 By element: Atomic # 1 Polarization: 17.95 SS G_CDS: 0.40 Total: 18.35 kcal Atomic # 6 Polarization: 3.02 SS G_CDS: 6.37 Total: 9.38 kcal Atomic # 7 Polarization: -101.16 SS G_CDS: -3.85 Total: -105.01 kcal Atomic # 8 Polarization: -32.88 SS G_CDS: -1.17 Total: -34.05 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Total: -69.31 3.77 -65.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073724242.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.881 kcal (2) G-P(sol) polarization free energy of solvation -69.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.537 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds