Wall clock time and date at job start Tue Mar 31 2020 16:18:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47261 * 2 1 4 4 C 1.52995 * 109.46970 * 179.97438 * 3 2 1 5 5 C 1.50699 * 109.47125 * 179.97438 * 4 3 2 6 6 O 1.21287 * 120.00098 * 0.02562 * 5 4 3 7 7 N 1.34774 * 120.00316 * 180.02562 * 5 4 3 8 8 C 1.46500 * 119.99953 * 5.37571 * 7 5 4 9 9 C 1.53006 * 109.47101 * 269.99905 * 8 7 5 10 10 C 1.46508 * 120.00200 * 185.37491 * 7 5 4 11 11 C 1.53491 * 114.20556 * 245.64097 * 10 7 5 12 12 N 1.47069 * 87.98357 * 220.14953 * 11 10 7 13 13 C 1.34779 * 136.05315 * 207.08846 * 12 11 10 14 14 O 1.21281 * 120.00388 * 359.97438 * 13 12 11 15 15 C 1.50699 * 119.99873 * 179.97438 * 13 12 11 16 16 S 1.81000 * 109.47434 * 179.97438 * 15 13 12 17 17 C 1.76200 * 100.00086 * 180.02562 * 16 15 13 18 18 H 1.07997 * 120.00028 * 359.97438 * 17 16 15 19 19 C 1.38795 * 119.99719 * 179.72844 * 17 16 15 20 20 N 1.31627 * 120.00186 * 359.97438 * 19 17 16 21 21 Si 1.86807 * 120.00022 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.46718 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.47267 * 119.99504 * 21 19 17 24 24 H 1.48502 * 109.46922 * 240.00082 * 21 19 17 25 25 C 1.47057 * 87.88679 * 27.34429 * 12 11 10 26 26 H 1.09001 * 109.47100 * 300.00230 * 1 2 3 27 27 H 1.08998 * 109.46826 * 59.99745 * 1 2 3 28 28 H 1.08991 * 109.47442 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47100 * 239.99770 * 2 1 3 30 30 H 1.09006 * 109.46873 * 119.99929 * 2 1 3 31 31 H 1.09001 * 109.47251 * 59.99862 * 3 2 1 32 32 H 1.09001 * 109.46694 * 299.99990 * 3 2 1 33 33 H 1.09002 * 109.47427 * 60.00389 * 4 3 2 34 34 H 1.09001 * 109.47509 * 299.99620 * 4 3 2 35 35 H 1.08996 * 109.47019 * 29.99733 * 8 7 5 36 36 H 1.09000 * 109.47218 * 150.00167 * 8 7 5 37 37 H 1.08998 * 109.46884 * 300.00327 * 9 8 7 38 38 H 1.09000 * 109.46871 * 60.00049 * 9 8 7 39 39 H 1.08998 * 109.47286 * 179.97438 * 9 8 7 40 40 H 1.09000 * 113.27891 * 18.70781 * 10 7 5 41 41 H 1.08999 * 113.47047 * 105.36827 * 11 10 7 42 42 H 1.09000 * 113.52064 * 334.93485 * 11 10 7 43 43 H 1.09008 * 109.46904 * 59.99839 * 15 13 12 44 44 H 1.08995 * 109.47375 * 300.00175 * 15 13 12 45 45 H 0.97008 * 120.00139 * 180.02562 * 20 19 17 46 46 H 1.09000 * 113.47010 * 87.43772 * 25 12 11 47 47 H 1.09000 * 113.46644 * 217.88393 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0724 2.8632 0.0000 6 8 3.2843 3.7851 -0.0004 7 7 5.3974 3.1095 -0.0001 8 6 6.3484 2.0014 -0.1185 9 6 6.7042 1.4834 1.2766 10 6 5.8869 4.4853 0.1181 11 6 6.6194 5.0020 -1.1278 12 7 7.5855 5.6495 -0.2276 13 6 8.3997 6.7219 -0.2874 14 8 8.4306 7.4048 -1.2892 15 6 9.2717 7.0724 0.8906 16 16 10.2417 8.5510 0.5045 17 6 11.1425 8.7274 2.0085 18 1 10.9936 8.0224 2.8130 19 6 12.0472 9.7694 2.1574 20 7 12.2326 10.6255 1.1750 21 14 13.0017 9.9569 3.7523 22 1 12.6134 8.8743 4.6917 23 1 14.4572 9.8704 3.4711 24 1 12.6927 11.2752 4.3620 25 6 7.2768 4.6083 0.7640 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8901 31 1 1.6767 1.9564 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 3.9337 0.9285 -0.8891 34 1 3.9330 0.9288 0.8909 35 1 5.8986 1.1973 -0.7008 36 1 7.2523 2.3501 -0.6180 37 1 7.1539 2.2876 1.8589 38 1 5.8003 1.1347 1.7761 39 1 7.4114 0.6587 1.1885 40 1 5.1425 5.1746 0.5169 41 1 6.0324 5.7081 -1.7150 42 1 7.0562 4.2095 -1.7355 43 1 9.9450 6.2421 1.1041 44 1 8.6455 7.2655 1.7616 45 1 12.8652 11.3536 1.2789 46 1 7.8866 3.7113 0.6557 47 1 7.2497 4.9791 1.7886 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001079316629.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:18:59 Heat of formation + Delta-G solvation = -44.891964 kcal Electronic energy + Delta-G solvation = -25336.194175 eV Core-core repulsion = 21646.431172 eV Total energy + Delta-G solvation = -3689.763003 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.13821 -39.54770 -37.71515 -35.73818 -35.70531 -32.44919 -31.38684 -30.89484 -30.09368 -27.87723 -26.07630 -25.50177 -25.14954 -23.98104 -22.16252 -21.24100 -19.30022 -19.14676 -17.86387 -17.49214 -17.02606 -16.56665 -16.35586 -15.59403 -15.08897 -15.00384 -14.82182 -14.41037 -14.29531 -14.14222 -13.93736 -13.70587 -13.47735 -13.07155 -12.84507 -12.80299 -12.75722 -12.65237 -12.50995 -12.12752 -11.89094 -11.77667 -11.58120 -11.50164 -11.39545 -11.18104 -11.08465 -11.02884 -10.96754 -10.77906 -10.12442 -9.83590 -9.47803 -9.09459 -9.07180 -8.66381 -8.26077 -6.52889 -6.23541 -3.94643 2.26378 2.33137 2.81945 3.06334 3.20361 3.24460 3.29735 3.54766 3.97028 4.14079 4.18033 4.39626 4.41232 4.47105 4.49802 4.72278 4.72751 4.81022 4.83391 4.94377 4.97174 5.03931 5.11793 5.15275 5.16995 5.23928 5.29852 5.34769 5.40810 5.42622 5.47164 5.52748 5.58259 5.69868 5.74447 5.76731 5.84304 5.86049 5.90202 5.97121 6.10458 6.17473 6.97592 7.58002 7.77717 7.82499 8.33508 8.47856 9.21756 10.83956 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.027383 B = 0.001980 C = 0.001929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.298969 B =14136.846964 C =14511.886718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.124 4.124 3 C -0.107 4.107 4 C -0.140 4.140 5 C 0.516 3.484 6 O -0.533 6.533 7 N -0.603 5.603 8 C 0.098 3.902 9 C -0.177 4.177 10 C 0.111 3.889 11 C 0.092 3.908 12 N -0.649 5.649 13 C 0.566 3.434 14 O -0.510 6.510 15 C -0.144 4.144 16 S -0.060 6.060 17 C -0.535 4.535 18 H 0.073 0.927 19 C 0.074 3.926 20 N -0.867 5.867 21 Si 0.919 3.081 22 H -0.272 1.272 23 H -0.280 1.280 24 H -0.279 1.279 25 C 0.090 3.910 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.053 0.947 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.093 0.907 34 H 0.095 0.905 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.065 0.935 38 H 0.059 0.941 39 H 0.070 0.930 40 H 0.133 0.867 41 H 0.082 0.918 42 H 0.082 0.918 43 H 0.089 0.911 44 H 0.090 0.910 45 H 0.268 0.732 46 H 0.090 0.910 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.639 -26.505 -0.462 31.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.162 4.162 3 C -0.145 4.145 4 C -0.179 4.179 5 C 0.305 3.695 6 O -0.409 6.409 7 N -0.337 5.337 8 C -0.025 4.025 9 C -0.236 4.236 10 C 0.006 3.994 11 C -0.033 4.033 12 N -0.388 5.388 13 C 0.355 3.645 14 O -0.383 6.383 15 C -0.295 4.295 16 S 0.167 5.833 17 C -0.683 4.683 18 H 0.092 0.908 19 C -0.136 4.136 20 N -0.502 5.502 21 Si 0.746 3.254 22 H -0.196 1.196 23 H -0.205 1.205 24 H -0.205 1.205 25 C -0.035 4.035 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.111 0.889 34 H 0.113 0.887 35 H 0.102 0.898 36 H 0.103 0.897 37 H 0.084 0.916 38 H 0.079 0.921 39 H 0.089 0.911 40 H 0.150 0.850 41 H 0.101 0.899 42 H 0.100 0.900 43 H 0.107 0.893 44 H 0.108 0.892 45 H 0.078 0.922 46 H 0.108 0.892 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -17.761 -24.606 -2.037 30.415 hybrid contribution 0.853 -0.778 2.177 2.464 sum -16.908 -25.384 0.140 30.500 Atomic orbital electron populations 1.21762 0.95663 1.01557 1.02102 1.21543 0.96212 0.96504 1.01941 1.21409 0.92650 0.96696 1.03750 1.21789 0.98112 0.93667 1.04371 1.20826 0.81468 0.91937 0.75285 1.90731 1.54791 1.46660 1.48723 1.47932 1.06036 1.06543 1.73165 1.21662 0.93807 0.88967 0.98057 1.22332 1.02250 1.02013 0.96966 1.22968 0.95326 0.83817 0.97251 1.23332 0.88977 0.96223 0.94738 1.49368 1.43540 1.26581 1.19349 1.19930 0.77734 0.77752 0.89041 1.90729 1.65089 1.49387 1.33076 1.23476 1.01180 1.06434 0.98374 1.85432 1.48011 1.26601 1.23249 1.22893 1.27602 1.16511 1.01336 0.90845 1.24996 0.96227 0.94752 0.97594 1.70028 1.34224 1.14626 1.31337 0.86107 0.79289 0.78231 0.81801 1.19619 1.20542 1.20524 1.23504 0.93267 0.91344 0.95337 0.92631 0.92623 0.92779 0.92000 0.92000 0.91158 0.91148 0.88873 0.88702 0.89787 0.89738 0.91610 0.92149 0.91082 0.84956 0.89909 0.90039 0.89271 0.89184 0.92194 0.89207 0.89583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 9.91 37.16 0.37 -0.40 16 2 C -0.12 -0.59 5.93 -26.73 -0.16 -0.75 16 3 C -0.11 -0.69 4.50 -26.73 -0.12 -0.81 16 4 C -0.14 -0.77 4.38 -27.89 -0.12 -0.89 16 5 C 0.52 4.68 7.66 -10.99 -0.08 4.60 16 6 O -0.53 -7.12 15.58 5.55 0.09 -7.03 16 7 N -0.60 -4.66 2.71 -165.73 -0.45 -5.11 16 8 C 0.10 0.45 5.05 -4.04 -0.02 0.43 16 9 C -0.18 -0.71 9.93 37.16 0.37 -0.34 16 10 C 0.11 1.10 4.49 -67.68 -0.30 0.80 16 11 C 0.09 1.08 8.19 -8.51 -0.07 1.01 16 12 N -0.65 -9.46 3.69 -185.09 -0.68 -10.14 16 13 C 0.57 11.19 8.10 -10.98 -0.09 11.10 16 14 O -0.51 -12.21 16.64 5.56 0.09 -12.11 16 15 C -0.14 -2.99 5.98 36.01 0.22 -2.77 16 16 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 17 C -0.54 -15.29 9.50 30.94 0.29 -15.00 16 18 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 19 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 20 N -0.87 -26.20 13.22 55.49 0.73 -25.47 16 21 Si 0.92 21.39 29.55 -169.99 -5.02 16.37 16 22 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 23 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 24 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 25 C 0.09 0.89 6.97 -8.38 -0.06 0.84 16 26 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 31 H 0.07 0.55 8.10 -51.93 -0.42 0.13 16 32 H 0.07 0.55 8.10 -51.93 -0.42 0.13 16 33 H 0.09 0.35 7.24 -51.93 -0.38 -0.03 16 34 H 0.09 0.37 6.92 -51.93 -0.36 0.01 16 35 H 0.08 0.24 6.48 -51.93 -0.34 -0.10 16 36 H 0.08 0.40 6.22 -51.93 -0.32 0.07 16 37 H 0.06 0.33 6.44 -51.93 -0.33 0.00 16 38 H 0.06 0.23 6.92 -51.93 -0.36 -0.13 16 39 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 40 H 0.13 1.55 7.44 -51.93 -0.39 1.16 16 41 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.08 0.81 7.37 -51.93 -0.38 0.43 16 43 H 0.09 1.70 8.14 -51.91 -0.42 1.28 16 44 H 0.09 1.74 8.14 -51.92 -0.42 1.32 16 45 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 46 H 0.09 0.70 5.33 -51.93 -0.28 0.43 16 47 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 393.48 15.07 5.93 5.93 Total: -1.00 -36.66 393.48 -9.15 -45.81 By element: Atomic # 1 Polarization: 3.53 SS G_CDS: -7.75 Total: -4.22 kcal Atomic # 6 Polarization: -0.31 SS G_CDS: 0.12 Total: -0.18 kcal Atomic # 7 Polarization: -40.32 SS G_CDS: -0.40 Total: -40.71 kcal Atomic # 8 Polarization: -19.32 SS G_CDS: 0.18 Total: -19.15 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -36.66 -9.15 -45.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079316629.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.914 kcal (2) G-P(sol) polarization free energy of solvation -36.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds