Wall clock time and date at job start Tue Mar 31 2020 16:18:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47261 * 2 1 4 4 C 1.52995 * 109.46970 * 179.97438 * 3 2 1 5 5 C 1.50699 * 109.47125 * 179.97438 * 4 3 2 6 6 O 1.21287 * 120.00098 * 0.02562 * 5 4 3 7 7 N 1.34774 * 120.00316 * 180.02562 * 5 4 3 8 8 C 1.46500 * 119.99953 * 5.37571 * 7 5 4 9 9 C 1.53006 * 109.47101 * 269.99905 * 8 7 5 10 10 C 1.46508 * 120.00200 * 185.37491 * 7 5 4 11 11 C 1.53491 * 114.20556 * 245.64097 * 10 7 5 12 12 N 1.47069 * 87.98357 * 220.14953 * 11 10 7 13 13 C 1.34779 * 136.05315 * 207.08846 * 12 11 10 14 14 O 1.21281 * 120.00388 * 359.97438 * 13 12 11 15 15 C 1.50699 * 119.99873 * 179.97438 * 13 12 11 16 16 S 1.81000 * 109.47434 * 179.97438 * 15 13 12 17 17 C 1.76200 * 100.00086 * 180.02562 * 16 15 13 18 18 H 1.07997 * 120.00028 * 359.97438 * 17 16 15 19 19 C 1.38795 * 119.99719 * 179.72844 * 17 16 15 20 20 N 1.31627 * 120.00186 * 359.97438 * 19 17 16 21 21 Si 1.86807 * 120.00022 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.46718 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.47267 * 119.99504 * 21 19 17 24 24 H 1.48502 * 109.46922 * 240.00082 * 21 19 17 25 25 C 1.47057 * 87.88679 * 27.34429 * 12 11 10 26 26 H 1.09001 * 109.47100 * 300.00230 * 1 2 3 27 27 H 1.08998 * 109.46826 * 59.99745 * 1 2 3 28 28 H 1.08991 * 109.47442 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47100 * 239.99770 * 2 1 3 30 30 H 1.09006 * 109.46873 * 119.99929 * 2 1 3 31 31 H 1.09001 * 109.47251 * 59.99862 * 3 2 1 32 32 H 1.09001 * 109.46694 * 299.99990 * 3 2 1 33 33 H 1.09002 * 109.47427 * 60.00389 * 4 3 2 34 34 H 1.09001 * 109.47509 * 299.99620 * 4 3 2 35 35 H 1.08996 * 109.47019 * 29.99733 * 8 7 5 36 36 H 1.09000 * 109.47218 * 150.00167 * 8 7 5 37 37 H 1.08998 * 109.46884 * 300.00327 * 9 8 7 38 38 H 1.09000 * 109.46871 * 60.00049 * 9 8 7 39 39 H 1.08998 * 109.47286 * 179.97438 * 9 8 7 40 40 H 1.09000 * 113.27891 * 18.70781 * 10 7 5 41 41 H 1.08999 * 113.47047 * 105.36827 * 11 10 7 42 42 H 1.09000 * 113.52064 * 334.93485 * 11 10 7 43 43 H 1.09008 * 109.46904 * 59.99839 * 15 13 12 44 44 H 1.08995 * 109.47375 * 300.00175 * 15 13 12 45 45 H 0.97008 * 120.00139 * 180.02562 * 20 19 17 46 46 H 1.09000 * 113.47010 * 87.43772 * 25 12 11 47 47 H 1.09000 * 113.46644 * 217.88393 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0724 2.8632 0.0000 6 8 3.2843 3.7851 -0.0004 7 7 5.3974 3.1095 -0.0001 8 6 6.3484 2.0014 -0.1185 9 6 6.7042 1.4834 1.2766 10 6 5.8869 4.4853 0.1181 11 6 6.6194 5.0020 -1.1278 12 7 7.5855 5.6495 -0.2276 13 6 8.3997 6.7219 -0.2874 14 8 8.4306 7.4048 -1.2892 15 6 9.2717 7.0724 0.8906 16 16 10.2417 8.5510 0.5045 17 6 11.1425 8.7274 2.0085 18 1 10.9936 8.0224 2.8130 19 6 12.0472 9.7694 2.1574 20 7 12.2326 10.6255 1.1750 21 14 13.0017 9.9569 3.7523 22 1 12.6134 8.8743 4.6917 23 1 14.4572 9.8704 3.4711 24 1 12.6927 11.2752 4.3620 25 6 7.2768 4.6083 0.7640 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8901 31 1 1.6767 1.9564 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 3.9337 0.9285 -0.8891 34 1 3.9330 0.9288 0.8909 35 1 5.8986 1.1973 -0.7008 36 1 7.2523 2.3501 -0.6180 37 1 7.1539 2.2876 1.8589 38 1 5.8003 1.1347 1.7761 39 1 7.4114 0.6587 1.1885 40 1 5.1425 5.1746 0.5169 41 1 6.0324 5.7081 -1.7150 42 1 7.0562 4.2095 -1.7355 43 1 9.9450 6.2421 1.1041 44 1 8.6455 7.2655 1.7616 45 1 12.8652 11.3536 1.2789 46 1 7.8866 3.7113 0.6557 47 1 7.2497 4.9791 1.7886 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001079316629.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:18:58 Heat of formation + Delta-G solvation = -69.134588 kcal Electronic energy + Delta-G solvation = -25337.245414 eV Core-core repulsion = 21646.431172 eV Total energy + Delta-G solvation = -3690.814242 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.04593 -40.56288 -39.02285 -36.46936 -36.21177 -34.60699 -32.35189 -31.36048 -31.18602 -29.05984 -27.69742 -26.98713 -25.78606 -24.44362 -22.94021 -21.79275 -20.50458 -19.92394 -19.60307 -18.38588 -18.13525 -17.54094 -17.04691 -16.90645 -16.80894 -16.34194 -15.84290 -15.71346 -15.25704 -14.94023 -14.61553 -14.58088 -14.31997 -14.20464 -13.91789 -13.77089 -13.63567 -13.46107 -13.28654 -13.18277 -13.15970 -12.92427 -12.61694 -12.51814 -12.29234 -12.12797 -11.99558 -11.82980 -11.78040 -11.74157 -11.39101 -11.17641 -11.15492 -10.78564 -10.31902 -9.92540 -9.72624 -8.71244 -8.36571 -6.15999 1.12059 1.39095 1.40968 1.44337 1.54109 1.57667 1.72913 2.16533 2.25044 2.97881 3.13479 3.19167 3.48413 3.58252 3.81320 3.95920 3.97421 4.05961 4.09013 4.22045 4.28925 4.36145 4.38102 4.40366 4.44012 4.50272 4.50702 4.65280 4.66998 4.72451 4.76298 4.82720 4.96068 5.01023 5.06327 5.10399 5.14140 5.31424 5.40206 5.42338 5.48629 5.50663 5.55747 6.18199 6.33163 6.50205 6.99325 7.04584 7.14989 8.73062 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.027383 B = 0.001980 C = 0.001929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.298969 B =14136.846964 C =14511.886718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.118 4.118 3 C -0.106 4.106 4 C -0.130 4.130 5 C 0.510 3.490 6 O -0.586 6.586 7 N -0.596 5.596 8 C 0.090 3.910 9 C -0.176 4.176 10 C 0.124 3.876 11 C 0.089 3.911 12 N -0.648 5.648 13 C 0.564 3.436 14 O -0.566 6.566 15 C -0.117 4.117 16 S -0.151 6.151 17 C -0.546 4.546 18 H 0.084 0.916 19 C 0.013 3.987 20 N -0.911 5.911 21 Si 1.001 2.999 22 H -0.255 1.255 23 H -0.273 1.273 24 H -0.275 1.275 25 C 0.096 3.904 26 H 0.048 0.952 27 H 0.048 0.952 28 H 0.063 0.937 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.049 0.951 32 H 0.049 0.951 33 H 0.121 0.879 34 H 0.120 0.880 35 H 0.111 0.889 36 H 0.089 0.911 37 H 0.055 0.945 38 H 0.063 0.937 39 H 0.087 0.913 40 H 0.111 0.889 41 H 0.062 0.938 42 H 0.109 0.891 43 H 0.111 0.889 44 H 0.106 0.894 45 H 0.272 0.728 46 H 0.123 0.877 47 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.207 -30.333 1.338 34.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.156 4.156 3 C -0.145 4.145 4 C -0.170 4.170 5 C 0.301 3.699 6 O -0.466 6.466 7 N -0.328 5.328 8 C -0.031 4.031 9 C -0.234 4.234 10 C 0.018 3.982 11 C -0.035 4.035 12 N -0.385 5.385 13 C 0.354 3.646 14 O -0.444 6.444 15 C -0.268 4.268 16 S 0.076 5.924 17 C -0.693 4.693 18 H 0.102 0.898 19 C -0.191 4.191 20 N -0.548 5.548 21 Si 0.822 3.178 22 H -0.179 1.179 23 H -0.198 1.198 24 H -0.200 1.200 25 C -0.027 4.027 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.082 0.918 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.139 0.861 34 H 0.138 0.862 35 H 0.129 0.871 36 H 0.107 0.893 37 H 0.074 0.926 38 H 0.082 0.918 39 H 0.106 0.894 40 H 0.129 0.871 41 H 0.081 0.919 42 H 0.127 0.873 43 H 0.129 0.871 44 H 0.124 0.876 45 H 0.081 0.919 46 H 0.141 0.859 47 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -17.347 -28.530 -0.215 33.390 hybrid contribution 0.574 0.272 1.571 1.695 sum -16.773 -28.257 1.356 32.888 Atomic orbital electron populations 1.21800 0.96253 1.01974 1.01462 1.21511 0.95710 0.95220 1.03140 1.21367 0.93691 0.97562 1.01831 1.21832 0.97039 0.91302 1.06781 1.21557 0.81327 0.92962 0.74040 1.90718 1.56190 1.48478 1.51179 1.47991 1.06352 1.06147 1.72311 1.21997 0.93427 0.88470 0.99189 1.22323 1.02810 1.02180 0.96095 1.22519 0.94786 0.85152 0.95768 1.23604 0.88356 0.96122 0.95419 1.49233 1.41787 1.25805 1.21700 1.19643 0.78284 0.78778 0.87936 1.90702 1.67241 1.51746 1.34707 1.23256 1.00899 1.03313 0.99331 1.85637 1.50120 1.31687 1.24965 1.23222 1.27764 1.17046 1.01295 0.89760 1.26154 0.97219 0.94112 1.01652 1.70193 1.35191 1.15442 1.33967 0.84877 0.77512 0.78630 0.76739 1.17890 1.19784 1.20005 1.23812 0.93214 0.90830 0.94813 0.93322 0.93327 0.91788 0.90712 0.90728 0.93176 0.93178 0.86116 0.86199 0.87113 0.89254 0.92634 0.91772 0.89402 0.87131 0.91912 0.87339 0.87072 0.87575 0.91939 0.85906 0.88572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.41 9.91 71.98 0.71 -0.70 16 2 C -0.12 -0.86 5.93 30.60 0.18 -0.67 16 3 C -0.11 -1.26 4.50 30.59 0.14 -1.12 16 4 C -0.13 -1.04 4.38 29.85 0.13 -0.91 16 5 C 0.51 8.47 7.66 87.66 0.67 9.15 16 6 O -0.59 -15.91 15.58 -3.05 -0.05 -15.96 16 7 N -0.60 -7.72 2.71 -796.63 -2.15 -9.88 16 8 C 0.09 0.45 5.05 86.38 0.44 0.89 16 9 C -0.18 -0.65 9.93 71.98 0.71 0.07 16 10 C 0.12 2.29 4.49 45.55 0.20 2.50 16 11 C 0.09 2.01 8.19 83.17 0.68 2.69 16 12 N -0.65 -18.23 3.69 -857.89 -3.16 -21.40 16 13 C 0.56 22.46 8.10 87.66 0.71 23.17 16 14 O -0.57 -28.19 16.64 -3.03 -0.05 -28.24 16 15 C -0.12 -4.81 5.98 71.24 0.43 -4.38 16 16 S -0.15 -8.56 20.57 -56.49 -1.16 -9.73 16 17 C -0.55 -31.29 9.50 67.95 0.65 -30.65 16 18 H 0.08 4.47 7.80 -2.91 -0.02 4.45 16 19 C 0.01 0.76 5.49 84.86 0.47 1.23 16 20 N -0.91 -56.29 13.22 21.65 0.29 -56.00 16 21 Si 1.00 43.53 29.55 68.60 2.03 45.55 16 22 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 23 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 24 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 25 C 0.10 1.66 6.97 83.27 0.58 2.24 16 26 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 27 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 28 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 29 H 0.07 0.38 8.14 -2.39 -0.02 0.36 16 30 H 0.07 0.38 8.14 -2.38 -0.02 0.36 16 31 H 0.05 0.78 8.10 -2.39 -0.02 0.76 16 32 H 0.05 0.79 8.10 -2.39 -0.02 0.77 16 33 H 0.12 0.35 7.24 -2.39 -0.02 0.34 16 34 H 0.12 0.42 6.92 -2.39 -0.02 0.40 16 35 H 0.11 0.04 6.48 -2.39 -0.02 0.02 16 36 H 0.09 0.42 6.22 -2.39 -0.01 0.41 16 37 H 0.05 0.34 6.44 -2.39 -0.02 0.32 16 38 H 0.06 0.21 6.92 -2.39 -0.02 0.20 16 39 H 0.09 0.09 8.14 -2.39 -0.02 0.07 16 40 H 0.11 2.61 7.44 -2.39 -0.02 2.60 16 41 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 42 H 0.11 1.90 7.37 -2.39 -0.02 1.89 16 43 H 0.11 4.06 8.14 -2.39 -0.02 4.04 16 44 H 0.11 3.99 8.14 -2.40 -0.02 3.97 16 45 H 0.27 15.49 8.31 -92.70 -0.77 14.72 16 46 H 0.12 1.41 5.33 -2.39 -0.01 1.40 16 47 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -85.20 393.48 3.39 -81.81 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: 0.95 Total: 10.36 kcal Atomic # 6 Polarization: -3.22 SS G_CDS: 6.70 Total: 3.48 kcal Atomic # 7 Polarization: -82.24 SS G_CDS: -5.03 Total: -87.28 kcal Atomic # 8 Polarization: -44.10 SS G_CDS: -0.10 Total: -44.20 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.55 kcal Atomic # 16 Polarization: -8.56 SS G_CDS: -1.16 Total: -9.73 kcal Total: -85.20 3.39 -81.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079316629.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.675 kcal (2) G-P(sol) polarization free energy of solvation -85.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds