Wall clock time and date at job start Tue Mar 31 2020 16:12:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46773 * 2 1 4 4 C 1.53004 * 109.47129 * 179.97438 * 3 2 1 5 5 C 1.50700 * 109.47108 * 179.97438 * 4 3 2 6 6 O 1.21281 * 119.99816 * 0.02562 * 5 4 3 7 7 N 1.34774 * 119.99698 * 180.02562 * 5 4 3 8 8 C 1.47064 * 136.06179 * 359.63100 * 7 5 4 9 9 C 1.53751 * 87.89217 * 152.96319 * 8 7 5 10 10 N 1.46496 * 114.26769 * 139.79103 * 9 8 7 11 11 C 1.46504 * 120.00380 * 332.11786 * 10 9 8 12 12 C 1.53003 * 109.47001 * 89.99684 * 11 10 9 13 13 C 1.34782 * 119.99786 * 152.11668 * 10 9 8 14 14 O 1.21279 * 120.00171 * 5.37735 * 13 10 9 15 15 C 1.50704 * 119.99591 * 185.37296 * 13 10 9 16 16 S 1.81001 * 109.46811 * 180.02562 * 15 13 10 17 17 C 1.76195 * 99.99878 * 180.02562 * 16 15 13 18 18 H 1.08002 * 120.00251 * 359.97438 * 17 16 15 19 19 C 1.38806 * 120.00073 * 179.97438 * 17 16 15 20 20 N 1.31633 * 119.99623 * 359.97438 * 19 17 16 21 21 Si 1.86791 * 120.00171 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.47453 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47426 * 119.99997 * 21 19 17 24 24 H 1.48501 * 109.47085 * 240.00087 * 21 19 17 25 25 C 1.47075 * 136.05565 * 180.02562 * 7 5 4 26 26 H 1.08999 * 109.46955 * 60.00492 * 1 2 3 27 27 H 1.09003 * 109.46660 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47368 * 299.99994 * 1 2 3 29 29 H 1.09002 * 109.47015 * 240.00365 * 2 1 3 30 30 H 1.08998 * 109.47431 * 119.99734 * 2 1 3 31 31 H 1.09000 * 109.47431 * 300.00115 * 3 2 1 32 32 H 1.08998 * 109.47169 * 59.99884 * 3 2 1 33 33 H 1.09000 * 109.47107 * 300.00373 * 4 3 2 34 34 H 1.08998 * 109.47141 * 59.99926 * 4 3 2 35 35 H 1.09003 * 113.46719 * 267.69850 * 8 7 5 36 36 H 1.08998 * 113.46659 * 38.13351 * 8 7 5 37 37 H 1.08997 * 114.39376 * 272.67638 * 9 8 7 38 38 H 1.08997 * 109.47410 * 210.00360 * 11 10 9 39 39 H 1.09000 * 109.46553 * 330.00029 * 11 10 9 40 40 H 1.08995 * 109.46719 * 179.97438 * 12 11 10 41 41 H 1.09005 * 109.46970 * 300.00474 * 12 11 10 42 42 H 1.09001 * 109.46922 * 60.00250 * 12 11 10 43 43 H 1.09000 * 109.47387 * 299.99864 * 15 13 10 44 44 H 1.08994 * 109.47331 * 60.00596 * 15 13 10 45 45 H 0.97004 * 119.99923 * 180.02562 * 20 19 17 46 46 H 1.08994 * 113.46701 * 321.86654 * 25 7 5 47 47 H 1.09002 * 113.46176 * 92.24479 * 25 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 6 4.0722 2.8635 0.0000 6 8 3.2840 3.7852 -0.0004 7 7 5.3973 3.1098 -0.0001 8 6 6.6249 2.3000 0.0068 9 6 7.3320 3.4688 -0.6987 10 7 8.6931 3.7255 -0.2214 11 6 9.0642 3.3823 1.1537 12 6 9.5943 1.9476 1.1959 13 6 9.6040 4.2774 -1.0474 14 8 9.2727 4.6511 -2.1526 15 6 11.0342 4.4302 -0.5976 16 16 12.0033 5.1990 -1.9189 17 6 13.5854 5.2543 -1.1454 18 1 13.7098 4.8734 -0.1424 19 6 14.6720 5.7874 -1.8250 20 7 14.5205 6.2512 -3.0475 21 14 16.3491 5.8467 -1.0047 22 1 16.2538 5.2677 0.3595 23 1 17.3214 5.0633 -1.8085 24 1 16.8055 7.2568 -0.9125 25 6 6.2519 4.3067 -0.0002 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.6766 1.9564 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 3.9330 0.9289 0.8908 34 1 3.9337 0.9287 -0.8891 35 1 7.0082 2.1013 1.0077 36 1 6.5549 1.4004 -0.6046 37 1 7.2524 3.4530 -1.7856 38 1 9.8379 4.0660 1.5027 39 1 8.1886 3.4652 1.7976 40 1 9.8708 1.6925 2.2188 41 1 8.8204 1.2639 0.8468 42 1 10.4698 1.8648 0.5518 43 1 11.0701 5.0591 0.2919 44 1 11.4490 3.4492 -0.3660 45 1 15.2799 6.6234 -3.5226 46 1 5.8640 5.1169 -0.6175 47 1 6.5360 4.6372 0.9989 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001079342556.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:12:41 Heat of formation + Delta-G solvation = -45.542003 kcal Electronic energy + Delta-G solvation = -25344.679500 eV Core-core repulsion = 21654.888309 eV Total energy + Delta-G solvation = -3689.791191 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.11187 -39.42712 -38.03516 -35.69360 -35.39260 -32.46192 -31.51639 -30.62774 -29.85327 -28.27011 -26.44602 -25.53295 -24.70499 -23.66141 -22.12891 -21.30683 -19.24605 -19.21011 -17.76692 -17.44809 -17.13688 -16.47253 -16.22221 -15.82989 -15.23337 -14.94521 -14.83402 -14.38573 -14.13885 -14.05186 -13.64808 -13.56442 -13.40453 -13.23704 -12.97722 -12.86799 -12.67372 -12.53807 -12.45862 -12.08862 -11.74479 -11.70173 -11.60149 -11.39659 -11.31654 -11.14753 -11.07572 -11.04997 -10.96452 -10.78993 -10.13038 -9.83618 -9.48464 -9.10554 -9.03809 -8.71001 -8.26597 -6.54229 -6.25118 -3.96073 2.32060 2.33596 2.87288 2.94243 3.19096 3.23311 3.28484 3.53342 4.00779 4.07012 4.16765 4.45180 4.53781 4.57180 4.64492 4.73339 4.77422 4.89138 4.98123 5.00957 5.02658 5.07567 5.09920 5.11328 5.19040 5.21857 5.39904 5.42807 5.44492 5.49202 5.52478 5.53408 5.56257 5.66888 5.77122 5.80220 5.86634 5.88491 5.96616 5.99418 6.15664 6.49494 7.32225 7.44409 7.56541 7.86180 8.31828 8.42110 9.20435 10.82317 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.035369 B = 0.001965 C = 0.001921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.465595 B =14248.853304 C =14573.563683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C -0.106 4.106 4 C -0.133 4.133 5 C 0.544 3.456 6 O -0.538 6.538 7 N -0.646 5.646 8 C 0.086 3.914 9 C 0.120 3.880 10 N -0.610 5.610 11 C 0.102 3.898 12 C -0.177 4.177 13 C 0.538 3.462 14 O -0.509 6.509 15 C -0.150 4.150 16 S -0.062 6.062 17 C -0.535 4.535 18 H 0.073 0.927 19 C 0.074 3.926 20 N -0.867 5.867 21 Si 0.919 3.081 22 H -0.272 1.272 23 H -0.280 1.280 24 H -0.280 1.280 25 C 0.087 3.913 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.092 0.908 34 H 0.093 0.907 35 H 0.095 0.905 36 H 0.086 0.914 37 H 0.133 0.867 38 H 0.088 0.912 39 H 0.076 0.924 40 H 0.067 0.933 41 H 0.058 0.942 42 H 0.066 0.934 43 H 0.090 0.910 44 H 0.092 0.908 45 H 0.268 0.732 46 H 0.085 0.915 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.052 -14.244 11.108 26.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C -0.144 4.144 4 C -0.173 4.173 5 C 0.334 3.666 6 O -0.414 6.414 7 N -0.383 5.383 8 C -0.038 4.038 9 C 0.014 3.986 10 N -0.345 5.345 11 C -0.021 4.021 12 C -0.235 4.235 13 C 0.326 3.674 14 O -0.383 6.383 15 C -0.301 4.301 16 S 0.165 5.835 17 C -0.683 4.683 18 H 0.091 0.909 19 C -0.136 4.136 20 N -0.502 5.502 21 Si 0.745 3.255 22 H -0.196 1.196 23 H -0.206 1.206 24 H -0.206 1.206 25 C -0.037 4.037 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.110 0.890 34 H 0.112 0.888 35 H 0.113 0.887 36 H 0.104 0.896 37 H 0.151 0.849 38 H 0.106 0.894 39 H 0.094 0.906 40 H 0.086 0.914 41 H 0.077 0.923 42 H 0.085 0.915 43 H 0.108 0.892 44 H 0.110 0.890 45 H 0.078 0.922 46 H 0.103 0.897 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -21.129 -13.142 9.299 26.563 hybrid contribution 1.603 -0.444 1.967 2.577 sum -19.525 -13.586 11.267 26.320 Atomic orbital electron populations 1.21761 0.95626 1.01579 1.02067 1.21544 0.96217 0.96436 1.02040 1.21403 0.92481 0.96782 1.03728 1.21652 0.98022 0.93193 1.04448 1.20329 0.79144 0.91857 0.75247 1.90726 1.53688 1.46952 1.50083 1.49392 1.03710 1.11355 1.73808 1.23665 0.81949 0.96555 1.01633 1.22736 0.80729 0.94515 1.00629 1.47892 1.09854 1.63786 1.13008 1.21592 1.00981 0.97137 0.82436 1.22329 1.02227 0.96288 1.02647 1.20411 0.86795 0.75837 0.84369 1.90714 1.80304 1.46616 1.20616 1.23602 0.94474 1.05463 1.06528 1.85436 1.03369 1.77780 1.16933 1.22890 0.94298 1.47396 1.03754 0.90857 1.24993 0.99151 0.94548 0.94864 1.70027 1.31555 1.37928 1.10684 0.86120 0.82156 0.78004 0.79229 1.19610 1.20565 1.20565 1.23529 0.87779 0.91046 1.01382 0.92606 0.92736 0.92664 0.91893 0.91984 0.91078 0.91208 0.88971 0.88818 0.88729 0.89595 0.84945 0.89418 0.90557 0.91382 0.92292 0.91501 0.89178 0.88977 0.92207 0.89699 0.89528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.91 37.16 0.37 -0.49 16 2 C -0.12 -0.71 5.93 -26.73 -0.16 -0.87 16 3 C -0.11 -0.80 4.50 -26.73 -0.12 -0.92 16 4 C -0.13 -0.96 5.53 -27.88 -0.15 -1.11 16 5 C 0.54 6.07 8.08 -10.99 -0.09 5.98 16 6 O -0.54 -8.22 16.76 5.56 0.09 -8.12 16 7 N -0.65 -6.47 3.69 -185.06 -0.68 -7.15 16 8 C 0.09 0.65 6.97 -8.38 -0.06 0.59 16 9 C 0.12 1.29 4.49 -67.67 -0.30 0.99 16 10 N -0.61 -7.41 2.70 -165.72 -0.45 -7.85 16 11 C 0.10 0.89 5.05 -4.04 -0.02 0.87 16 12 C -0.18 -1.36 9.93 37.16 0.37 -0.99 16 13 C 0.54 9.37 7.68 -10.98 -0.08 9.28 16 14 O -0.51 -10.95 15.46 5.56 0.09 -10.87 16 15 C -0.15 -2.85 4.84 36.01 0.17 -2.67 16 16 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 17 C -0.54 -14.81 9.50 30.94 0.29 -14.52 16 18 H 0.07 1.91 7.80 -52.49 -0.41 1.51 16 19 C 0.07 2.06 5.49 -17.43 -0.10 1.96 16 20 N -0.87 -25.70 13.22 55.49 0.73 -24.96 16 21 Si 0.92 20.95 29.55 -169.99 -5.02 15.93 16 22 H -0.27 -5.98 7.11 56.52 0.40 -5.57 16 23 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 24 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 25 C 0.09 0.93 8.20 -8.49 -0.07 0.86 16 26 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.07 0.63 8.10 -51.93 -0.42 0.21 16 32 H 0.07 0.60 8.10 -51.93 -0.42 0.18 16 33 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.09 0.56 5.33 -51.93 -0.28 0.29 16 36 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.13 1.67 7.44 -51.93 -0.39 1.29 16 38 H 0.09 0.81 6.48 -51.93 -0.34 0.47 16 39 H 0.08 0.50 6.22 -51.93 -0.32 0.18 16 40 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.06 0.39 6.44 -51.93 -0.33 0.05 16 42 H 0.07 0.65 6.92 -51.93 -0.36 0.29 16 43 H 0.09 1.57 7.24 -51.92 -0.38 1.20 16 44 H 0.09 1.60 6.92 -51.92 -0.36 1.24 16 45 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 46 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 47 H 0.09 0.83 7.37 -51.93 -0.38 0.45 16 LS Contribution 393.48 15.07 5.93 5.93 Total: -1.00 -35.42 393.48 -9.22 -44.64 By element: Atomic # 1 Polarization: 5.09 SS G_CDS: -7.75 Total: -2.66 kcal Atomic # 6 Polarization: -1.10 SS G_CDS: 0.05 Total: -1.05 kcal Atomic # 7 Polarization: -39.57 SS G_CDS: -0.40 Total: -39.97 kcal Atomic # 8 Polarization: -19.17 SS G_CDS: 0.18 Total: -18.99 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -35.42 -9.22 -44.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079342556.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.898 kcal (2) G-P(sol) polarization free energy of solvation -35.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds