Wall clock time and date at job start Tue Mar 31 2020 16:23:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.50701 * 119.99851 * 2 1 4 4 C 1.31004 * 120.00216 * 180.02562 * 2 1 3 5 5 C 1.50700 * 119.99519 * 353.62928 * 4 2 1 6 6 N 1.46899 * 109.46641 * 125.80173 * 5 4 2 7 7 C 1.46844 * 111.00106 * 314.20614 * 6 5 4 8 8 C 1.53044 * 109.52238 * 174.16369 * 7 6 5 9 9 C 1.53122 * 109.27619 * 59.18087 * 8 7 6 10 10 H 1.08992 * 109.52234 * 62.25324 * 9 8 7 11 11 N 1.46498 * 109.51863 * 182.44102 * 9 8 7 12 12 C 1.34781 * 120.00221 * 274.68190 * 11 9 8 13 13 O 1.21279 * 119.99256 * 0.02562 * 12 11 9 14 14 C 1.50701 * 120.00231 * 180.02562 * 12 11 9 15 15 S 1.80991 * 109.46902 * 179.97438 * 14 12 11 16 16 C 1.76198 * 100.00019 * 179.97438 * 15 14 12 17 17 H 1.07999 * 119.99868 * 0.02562 * 16 15 14 18 18 C 1.38795 * 120.00380 * 179.97438 * 16 15 14 19 19 N 1.31633 * 119.99953 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00384 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47059 * 60.00080 * 20 18 16 22 22 H 1.48500 * 109.47440 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47225 * 300.00256 * 20 18 16 24 24 C 1.53120 * 109.15904 * 302.34269 * 9 8 7 25 25 H 1.09004 * 109.53497 * 297.69632 * 24 9 8 26 26 O 1.42902 * 109.50017 * 177.60104 * 24 9 8 27 27 C 1.46854 * 110.99881 * 189.99829 * 6 5 4 28 28 H 1.09002 * 109.47273 * 264.78810 * 1 2 3 29 29 H 1.09004 * 109.47290 * 24.79327 * 1 2 3 30 30 H 1.08999 * 109.47102 * 144.78867 * 1 2 3 31 31 H 1.09002 * 109.47496 * 269.99781 * 3 2 1 32 32 H 1.08998 * 109.47409 * 30.00398 * 3 2 1 33 33 H 1.09007 * 109.47105 * 149.99797 * 3 2 1 34 34 H 1.07997 * 119.99907 * 173.63348 * 4 2 1 35 35 H 1.08996 * 109.47460 * 5.79657 * 5 4 2 36 36 H 1.09001 * 109.46959 * 245.79564 * 5 4 2 37 37 H 1.08992 * 109.46199 * 294.17851 * 7 6 5 38 38 H 1.09001 * 109.46127 * 54.15276 * 7 6 5 39 39 H 1.08992 * 109.50077 * 179.12071 * 8 7 6 40 40 H 1.08997 * 109.50107 * 299.19840 * 8 7 6 41 41 H 0.97005 * 120.00122 * 94.67887 * 11 9 8 42 42 H 1.08995 * 109.46933 * 299.99995 * 14 12 11 43 43 H 1.08999 * 109.46958 * 60.00130 * 14 12 11 44 44 H 0.96999 * 120.00202 * 179.97438 * 19 18 16 45 45 H 0.96699 * 113.99798 * 180.19842 * 26 24 9 46 46 H 1.08996 * 109.46327 * 65.81681 * 27 6 5 47 47 H 1.09008 * 109.45815 * 305.85290 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2604 1.3051 0.0000 4 6 2.1620 -1.1345 -0.0005 5 6 1.4154 -2.4356 0.1437 6 7 1.7644 -3.3265 -0.9709 7 6 1.7286 -2.6071 -2.2506 8 6 2.2362 -3.5231 -3.3666 9 6 1.3527 -4.7718 -3.4368 10 1 0.3317 -4.4820 -3.6848 11 7 1.8687 -5.6794 -4.4645 12 6 1.5053 -5.5159 -5.7520 13 8 0.7515 -4.6171 -6.0598 14 6 2.0357 -6.4500 -6.8091 15 16 1.3693 -5.9747 -8.4234 16 6 2.1308 -7.1956 -9.4402 17 1 2.7848 -7.9337 -8.9999 18 6 1.8894 -7.2095 -10.8070 19 7 1.0920 -6.3102 -11.3436 20 14 2.6962 -8.5043 -11.8849 21 1 2.2775 -9.8555 -11.4330 22 1 2.2801 -8.3029 -13.2961 23 1 4.1727 -8.3836 -11.7826 24 6 1.3690 -5.4760 -2.0772 25 1 2.3838 -5.8006 -1.8470 26 8 0.5025 -6.6116 -2.1178 27 6 0.8866 -4.5034 -0.9987 28 1 -0.3634 -0.0934 1.0234 29 1 -0.3634 0.9330 -0.4310 30 1 -0.3633 -0.8396 -0.5925 31 1 2.4421 1.6198 -1.0277 32 1 1.6714 2.0648 0.5139 33 1 3.2129 1.1748 0.5139 34 1 3.2370 -1.1373 -0.1042 35 1 0.3428 -2.2423 0.1323 36 1 1.6893 -2.9090 1.0866 37 1 0.7047 -2.3031 -2.4678 38 1 2.3643 -1.7238 -2.1886 39 1 2.1948 -2.9941 -4.3186 40 1 3.2651 -3.8159 -3.1574 41 1 2.4720 -6.3980 -4.2183 42 1 3.1238 -6.3911 -6.8331 43 1 1.7320 -7.4708 -6.5774 44 1 0.9235 -6.3196 -12.2988 45 1 0.4614 -7.1048 -1.2870 46 1 -0.1334 -4.1905 -1.2217 47 1 0.9106 -4.9973 -0.0272 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099686381.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:23:04 Heat of formation + Delta-G solvation = -101.262034 kcal Electronic energy + Delta-G solvation = -25657.907021 eV Core-core repulsion = 21965.699628 eV Total energy + Delta-G solvation = -3692.207393 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.28185 -39.95504 -38.18795 -36.56901 -35.66015 -34.58518 -32.95324 -30.94335 -30.69312 -28.91638 -28.51645 -27.65340 -25.55237 -24.32932 -23.02066 -21.71207 -21.12390 -19.80933 -18.83602 -18.26769 -17.86258 -17.78651 -16.88063 -16.64701 -16.46925 -16.29624 -16.04974 -15.77747 -15.18911 -14.96098 -14.78484 -14.72900 -14.60163 -14.36788 -14.05052 -13.95647 -13.44411 -13.29600 -13.17393 -13.15143 -13.01124 -12.86604 -12.70877 -12.65752 -12.47610 -12.28740 -12.20820 -11.78886 -11.72699 -11.56477 -11.12946 -11.10538 -10.84178 -10.28746 -10.13528 -9.62142 -9.34339 -8.67310 -8.34435 -6.12976 1.20020 1.26149 1.44163 1.46224 1.56366 1.61043 2.23469 2.28396 2.76456 2.99307 3.19327 3.32208 3.62805 3.84749 3.87163 3.95993 3.98693 4.07395 4.12100 4.22115 4.29301 4.33744 4.39733 4.44940 4.49871 4.58597 4.63707 4.67565 4.70748 4.78745 4.84851 4.89630 4.93471 4.96737 5.00571 5.08678 5.14936 5.19351 5.41359 5.46335 5.72624 5.83825 5.98841 6.12997 6.19652 6.49864 6.88506 7.06300 7.24392 8.74628 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.022132 B = 0.002169 C = 0.002048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.805683 B =12904.389778 C =13671.490426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.132 4.132 3 C -0.118 4.118 4 C -0.171 4.171 5 C 0.081 3.919 6 N -0.529 5.529 7 C 0.066 3.934 8 C -0.119 4.119 9 C 0.152 3.848 10 H 0.054 0.946 11 N -0.702 5.702 12 C 0.535 3.465 13 O -0.567 6.567 14 C -0.128 4.128 15 S -0.151 6.151 16 C -0.547 4.547 17 H 0.083 0.917 18 C 0.012 3.988 19 N -0.912 5.912 20 Si 1.000 3.000 21 H -0.262 1.262 22 H -0.278 1.278 23 H -0.261 1.261 24 C 0.113 3.887 25 H 0.090 0.910 26 O -0.577 6.577 27 C 0.031 3.969 28 H 0.076 0.924 29 H 0.065 0.935 30 H 0.055 0.945 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.115 0.885 35 H 0.046 0.954 36 H 0.097 0.903 37 H 0.022 0.978 38 H 0.091 0.909 39 H 0.055 0.945 40 H 0.089 0.911 41 H 0.415 0.585 42 H 0.111 0.889 43 H 0.107 0.893 44 H 0.271 0.729 45 H 0.399 0.601 46 H 0.031 0.969 47 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.234 6.761 30.602 31.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.133 4.133 3 C -0.175 4.175 4 C -0.189 4.189 5 C -0.045 4.045 6 N -0.255 5.255 7 C -0.062 4.062 8 C -0.158 4.158 9 C 0.047 3.953 10 H 0.072 0.928 11 N -0.355 5.355 12 C 0.321 3.679 13 O -0.445 6.445 14 C -0.279 4.279 15 S 0.076 5.924 16 C -0.695 4.695 17 H 0.101 0.899 18 C -0.193 4.193 19 N -0.548 5.548 20 Si 0.822 3.178 21 H -0.187 1.187 22 H -0.203 1.203 23 H -0.186 1.186 24 C 0.054 3.946 25 H 0.108 0.892 26 O -0.385 6.385 27 C -0.097 4.097 28 H 0.094 0.906 29 H 0.084 0.916 30 H 0.074 0.926 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.133 0.867 35 H 0.064 0.936 36 H 0.115 0.885 37 H 0.040 0.960 38 H 0.109 0.891 39 H 0.073 0.927 40 H 0.108 0.892 41 H 0.252 0.748 42 H 0.129 0.871 43 H 0.125 0.875 44 H 0.080 0.920 45 H 0.250 0.750 46 H 0.049 0.951 47 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 3.277 8.325 29.431 30.761 hybrid contribution 0.427 -1.625 -0.237 1.697 sum 3.703 6.700 29.195 30.182 Atomic orbital electron populations 1.20923 0.92322 1.02278 1.02416 1.21861 0.96102 0.95669 0.99710 1.20855 0.99885 0.94445 1.02284 1.22531 1.00095 0.92922 1.03398 1.21366 0.97759 0.91028 0.94325 1.62022 1.52557 1.07826 1.03111 1.21985 0.99361 0.96599 0.88294 1.21887 1.00568 0.94996 0.98350 1.21026 0.97651 0.89912 0.86745 0.92754 1.45662 1.50144 1.34378 1.05273 1.20080 0.79901 0.84147 0.83763 1.90676 1.37035 1.34923 1.81889 1.23355 1.05100 1.02337 0.97099 1.85567 1.64525 1.44478 0.97842 1.23173 1.33780 1.17230 0.95292 0.89901 1.26161 0.95584 0.98871 0.98665 1.70184 1.35958 1.35680 1.12978 0.84981 0.78731 0.77755 0.76381 1.18665 1.20350 1.18562 1.21894 0.94653 0.86066 0.92022 0.89215 1.86612 1.68447 1.41836 1.41560 1.22779 0.94318 0.92239 1.00402 0.90554 0.91555 0.92592 0.91605 0.91076 0.91288 0.86684 0.93601 0.88466 0.96002 0.89080 0.92666 0.89232 0.74817 0.87091 0.87526 0.91984 0.75011 0.95082 0.87174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.49 9.04 71.23 0.64 -0.84 16 2 C -0.13 -1.71 6.05 -16.49 -0.10 -1.81 16 3 C -0.12 -1.26 10.00 71.24 0.71 -0.55 16 4 C -0.17 -2.27 7.11 25.64 0.18 -2.09 16 5 C 0.08 1.04 5.46 85.56 0.47 1.51 16 6 N -0.53 -8.10 4.80 -900.93 -4.32 -12.43 16 7 C 0.07 1.29 5.08 86.33 0.44 1.73 16 8 C -0.12 -2.76 5.67 30.65 0.17 -2.59 16 9 C 0.15 3.88 2.20 45.07 0.10 3.98 16 10 H 0.05 1.81 7.58 -2.39 -0.02 1.79 16 11 N -0.70 -19.81 4.99 -442.15 -2.21 -22.02 16 12 C 0.54 21.13 7.82 87.66 0.69 21.81 16 13 O -0.57 -27.71 15.52 -3.03 -0.05 -27.76 16 14 C -0.13 -5.32 6.16 71.24 0.44 -4.88 16 15 S -0.15 -8.66 20.57 -56.49 -1.16 -9.82 16 16 C -0.55 -31.89 9.50 67.95 0.65 -31.24 16 17 H 0.08 4.47 7.80 -2.91 -0.02 4.45 16 18 C 0.01 0.69 5.49 84.86 0.47 1.15 16 19 N -0.91 -56.93 13.22 21.65 0.29 -56.64 16 20 Si 1.00 44.21 29.55 68.60 2.03 46.24 16 21 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 22 H -0.28 -11.97 7.11 99.48 0.71 -11.27 16 23 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 24 C 0.11 1.94 3.14 30.64 0.10 2.04 16 25 H 0.09 1.23 8.14 -2.38 -0.02 1.21 16 26 O -0.58 -10.42 13.23 -148.98 -1.97 -12.39 16 27 C 0.03 0.45 5.05 86.32 0.44 0.89 16 28 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.07 0.76 8.09 -2.38 -0.02 0.74 16 30 H 0.06 0.78 6.48 -2.39 -0.02 0.77 16 31 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.07 0.64 8.12 -2.39 -0.02 0.62 16 33 H 0.07 0.66 8.07 -2.38 -0.02 0.64 16 34 H 0.12 1.54 8.05 -2.91 -0.02 1.52 16 35 H 0.05 0.60 5.44 -2.39 -0.01 0.59 16 36 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.02 0.49 8.14 -2.39 -0.02 0.47 16 38 H 0.09 1.68 6.49 -2.39 -0.02 1.67 16 39 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 40 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 41 H 0.41 8.95 8.61 -92.70 -0.80 8.16 16 42 H 0.11 4.12 8.14 -2.40 -0.02 4.10 16 43 H 0.11 4.07 8.14 -2.40 -0.02 4.05 16 44 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 45 H 0.40 3.03 9.08 -74.06 -0.67 2.36 16 46 H 0.03 0.55 8.14 -2.39 -0.02 0.53 16 47 H 0.11 0.97 8.12 -2.38 -0.02 0.95 16 Total: -1.00 -79.57 392.65 -2.51 -82.08 By element: Atomic # 1 Polarization: 24.13 SS G_CDS: -0.50 Total: 23.63 kcal Atomic # 6 Polarization: -16.28 SS G_CDS: 5.39 Total: -10.90 kcal Atomic # 7 Polarization: -84.84 SS G_CDS: -6.25 Total: -91.09 kcal Atomic # 8 Polarization: -38.13 SS G_CDS: -2.02 Total: -40.15 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Atomic # 16 Polarization: -8.66 SS G_CDS: -1.16 Total: -9.82 kcal Total: -79.57 -2.51 -82.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099686381.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.180 kcal (2) G-P(sol) polarization free energy of solvation -79.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds