Wall clock time and date at job start Tue Mar 31 2020 16:23:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.50702 * 119.99790 * 2 1 4 4 C 1.30991 * 120.00409 * 179.97438 * 2 1 3 5 5 C 1.50705 * 120.00108 * 353.78842 * 4 2 1 6 6 N 1.46891 * 109.47373 * 235.79350 * 5 4 2 7 7 C 1.46850 * 110.99994 * 45.79080 * 6 5 4 8 8 C 1.53040 * 109.52277 * 185.83573 * 7 6 5 9 9 C 1.53114 * 109.28083 * 300.82200 * 8 7 6 10 10 H 1.09002 * 109.52297 * 177.56117 * 9 8 7 11 11 N 1.46499 * 109.57138 * 297.71393 * 9 8 7 12 12 C 1.34776 * 120.00336 * 274.71486 * 11 9 8 13 13 O 1.21279 * 119.99611 * 0.02562 * 12 11 9 14 14 C 1.50697 * 119.99879 * 180.02562 * 12 11 9 15 15 S 1.81002 * 109.46940 * 180.02562 * 14 12 11 16 16 C 1.76196 * 99.99978 * 179.97438 * 15 14 12 17 17 H 1.08007 * 120.00163 * 0.02562 * 16 15 14 18 18 C 1.38805 * 120.00015 * 180.02562 * 16 15 14 19 19 N 1.31631 * 119.99825 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99854 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46971 * 60.00036 * 20 18 16 22 22 H 1.48505 * 109.47071 * 179.97438 * 20 18 16 23 23 H 1.48492 * 109.47261 * 299.99744 * 20 18 16 24 24 C 1.53116 * 109.16153 * 57.65181 * 9 8 7 25 25 H 1.09007 * 109.50578 * 62.28929 * 24 9 8 26 26 O 1.42902 * 109.53601 * 182.38652 * 24 9 8 27 27 C 1.46848 * 111.00153 * 169.99886 * 6 5 4 28 28 H 1.08995 * 109.47387 * 265.02633 * 1 2 3 29 29 H 1.09004 * 109.47312 * 25.02973 * 1 2 3 30 30 H 1.09007 * 109.46591 * 145.02774 * 1 2 3 31 31 H 1.08997 * 109.47025 * 180.02562 * 3 2 1 32 32 H 1.09006 * 109.47245 * 299.99389 * 3 2 1 33 33 H 1.08996 * 109.47819 * 59.99104 * 3 2 1 34 34 H 1.07998 * 120.00440 * 173.78845 * 4 2 1 35 35 H 1.08999 * 109.47133 * 115.79248 * 5 4 2 36 36 H 1.09006 * 109.46493 * 355.79746 * 5 4 2 37 37 H 1.08999 * 109.46155 * 305.85119 * 7 6 5 38 38 H 1.08999 * 109.46248 * 65.81945 * 7 6 5 39 39 H 1.08998 * 109.50108 * 180.87285 * 8 7 6 40 40 H 1.09005 * 109.53007 * 60.77997 * 8 7 6 41 41 H 0.97009 * 119.99773 * 94.72233 * 11 9 8 42 42 H 1.09006 * 109.47176 * 299.99699 * 14 12 11 43 43 H 1.08996 * 109.47275 * 59.99736 * 14 12 11 44 44 H 0.96997 * 119.99522 * 180.02562 * 19 18 16 45 45 H 0.96702 * 113.99779 * 179.82384 * 26 24 9 46 46 H 1.09005 * 109.46023 * 294.18329 * 27 6 5 47 47 H 1.09001 * 109.46143 * 54.14172 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2604 1.3051 0.0000 4 6 2.1620 -1.1344 0.0005 5 6 1.4152 -2.4357 0.1423 6 7 1.9522 -3.1864 1.2850 7 6 2.1205 -2.3150 2.4549 8 6 2.8144 -3.0922 3.5760 9 6 1.9674 -4.3136 3.9436 10 1 2.4789 -4.8937 4.7117 11 7 0.6647 -3.8733 4.4491 12 6 0.5204 -3.5513 5.7499 13 8 1.4690 -3.6256 6.5018 14 6 -0.8198 -3.0989 6.2698 15 16 -0.6910 -2.7421 8.0397 16 6 -2.3494 -2.2495 8.3739 17 1 -3.0806 -2.2401 7.5790 18 6 -2.7161 -1.8736 9.6588 19 7 -1.8251 -1.8856 10.6276 20 14 -4.4742 -1.3507 10.0129 21 1 -5.3976 -2.4675 9.6884 22 1 -4.6066 -1.0012 11.4502 23 1 -4.8159 -0.1685 9.1820 24 6 1.7664 -5.1795 2.6970 25 1 2.7329 -5.5399 2.3444 26 8 0.9304 -6.2931 3.0183 27 6 1.1030 -4.3419 1.6014 28 1 -0.3634 -0.0891 1.0237 29 1 -0.3634 0.9312 -0.4348 30 1 -0.3633 -0.8422 -0.5891 31 1 3.3321 1.1060 -0.0005 32 1 1.9972 1.8767 -0.8901 33 1 1.9971 1.8769 0.8898 34 1 3.2372 -1.1372 -0.1007 35 1 1.5346 -3.0241 -0.7674 36 1 0.3572 -2.2313 0.3066 37 1 2.7282 -1.4526 2.1809 38 1 1.1434 -1.9760 2.7989 39 1 2.9252 -2.4497 4.4495 40 1 3.7976 -3.4196 3.2379 41 1 -0.0940 -3.8136 3.8476 42 1 -1.1301 -2.1985 5.7397 43 1 -1.5561 -3.8865 6.1102 44 1 -2.0816 -1.6233 11.5255 45 1 0.7585 -6.8840 2.2724 46 1 0.1305 -3.9934 1.9494 47 1 0.9715 -4.9516 0.7075 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099686382.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:23:08 Heat of formation + Delta-G solvation = -71.278727 kcal Electronic energy + Delta-G solvation = -26264.023157 eV Core-core repulsion = 22573.115938 eV Total energy + Delta-G solvation = -3690.907219 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.43276 -38.58304 -37.41515 -35.86583 -34.31381 -32.40649 -31.75203 -30.16122 -29.30451 -28.24732 -27.80557 -25.47908 -24.98676 -23.40867 -22.26597 -20.97694 -19.14358 -18.24587 -17.90212 -17.46156 -16.71634 -16.10328 -15.85597 -15.62114 -15.30243 -15.03731 -14.78480 -14.33338 -14.26290 -14.10331 -14.07474 -13.50625 -13.42847 -13.05401 -12.86345 -12.70133 -12.60533 -12.50943 -12.33062 -12.15238 -11.93969 -11.69325 -11.56343 -11.28715 -11.11296 -11.02438 -11.02145 -10.76960 -10.58883 -10.23148 -9.79395 -9.31123 -9.05298 -9.03623 -8.82225 -8.56858 -8.20509 -6.46621 -6.19268 -3.89337 1.78056 3.07321 3.17652 3.24677 3.28722 3.32855 3.50353 3.78780 3.98578 4.22866 4.37917 4.50157 4.58333 4.62602 4.85045 4.91599 4.97298 5.03648 5.09738 5.15595 5.16240 5.20369 5.24803 5.28016 5.37342 5.44389 5.46068 5.50059 5.56240 5.64494 5.64810 5.69475 5.76242 5.79671 5.93418 6.02967 6.06304 6.18121 6.30968 6.47934 6.69126 6.74599 6.80409 7.39675 7.61300 7.78653 8.37221 8.69821 9.25779 10.88134 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.011903 B = 0.002948 C = 0.002579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2351.816326 B = 9494.213520 C =10854.506672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.126 4.126 3 C -0.118 4.118 4 C -0.164 4.164 5 C 0.081 3.919 6 N -0.529 5.529 7 C 0.055 3.945 8 C -0.127 4.127 9 C 0.155 3.845 10 H 0.095 0.905 11 N -0.724 5.724 12 C 0.534 3.466 13 O -0.519 6.519 14 C -0.153 4.153 15 S -0.058 6.058 16 C -0.536 4.536 17 H 0.071 0.929 18 C 0.074 3.926 19 N -0.868 5.868 20 Si 0.918 3.082 21 H -0.274 1.274 22 H -0.283 1.283 23 H -0.274 1.274 24 C 0.102 3.898 25 H 0.077 0.923 26 O -0.555 6.555 27 C 0.023 3.977 28 H 0.067 0.933 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.069 0.931 34 H 0.115 0.885 35 H 0.079 0.921 36 H 0.045 0.955 37 H 0.083 0.917 38 H 0.038 0.962 39 H 0.084 0.916 40 H 0.080 0.920 41 H 0.394 0.606 42 H 0.086 0.914 43 H 0.088 0.912 44 H 0.269 0.731 45 H 0.377 0.623 46 H 0.042 0.958 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.209 -1.087 -26.533 27.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.127 4.127 3 C -0.174 4.174 4 C -0.182 4.182 5 C -0.045 4.045 6 N -0.255 5.255 7 C -0.072 4.072 8 C -0.166 4.166 9 C 0.049 3.951 10 H 0.113 0.887 11 N -0.379 5.379 12 C 0.320 3.680 13 O -0.393 6.393 14 C -0.303 4.303 15 S 0.169 5.831 16 C -0.684 4.684 17 H 0.089 0.911 18 C -0.135 4.135 19 N -0.503 5.503 20 Si 0.744 3.256 21 H -0.199 1.199 22 H -0.208 1.208 23 H -0.200 1.200 24 C 0.042 3.958 25 H 0.095 0.905 26 O -0.359 6.359 27 C -0.105 4.105 28 H 0.086 0.914 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.133 0.867 35 H 0.097 0.903 36 H 0.063 0.937 37 H 0.101 0.899 38 H 0.056 0.944 39 H 0.103 0.897 40 H 0.098 0.902 41 H 0.229 0.771 42 H 0.104 0.896 43 H 0.107 0.893 44 H 0.079 0.921 45 H 0.224 0.776 46 H 0.060 0.940 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 9.302 -1.100 -24.597 26.320 hybrid contribution -3.414 0.504 -1.376 3.715 sum 5.888 -0.595 -25.973 26.639 Atomic orbital electron populations 1.20891 0.92481 1.02343 1.02282 1.21671 0.95827 0.95206 1.00028 1.20848 0.99483 0.94949 1.02151 1.22510 0.99919 0.92839 1.02935 1.21209 0.96470 0.92849 0.94017 1.61979 1.48626 1.08717 1.06148 1.22125 1.00028 0.95509 0.89534 1.21988 0.99019 0.97101 0.98470 1.20878 0.85361 0.94081 0.94760 0.88669 1.45941 1.11806 1.70035 1.10072 1.20254 0.90338 0.76198 0.81170 1.90689 1.41168 1.51429 1.56011 1.23521 0.96555 1.03717 1.06529 1.85372 1.15320 1.86584 0.95874 1.22838 0.95719 1.52137 0.97755 0.91062 1.24985 0.98453 0.95030 0.95080 1.70010 1.33872 1.44981 1.01443 0.86235 0.82859 0.79042 0.77422 1.19947 1.20802 1.19972 1.22042 0.93801 0.86299 0.93613 0.90535 1.86663 1.71528 1.38072 1.39654 1.22810 0.95154 0.93606 0.98952 0.91427 0.91819 0.91636 0.91969 0.91817 0.91256 0.86740 0.90307 0.93704 0.89920 0.94414 0.89742 0.90155 0.77147 0.89561 0.89336 0.92149 0.77645 0.94028 0.90370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.89 8.94 36.00 0.32 -0.57 16 2 C -0.13 -0.97 6.05 -101.06 -0.61 -1.58 16 3 C -0.12 -0.79 10.09 36.01 0.36 -0.43 16 4 C -0.16 -1.28 7.13 -36.02 -0.26 -1.54 16 5 C 0.08 0.63 5.35 -4.98 -0.03 0.60 16 6 N -0.53 -4.59 4.80 -236.11 -1.13 -5.72 16 7 C 0.06 0.56 4.94 -3.83 -0.02 0.55 16 8 C -0.13 -1.45 5.77 -26.65 -0.15 -1.60 16 9 C 0.15 1.96 2.51 -67.81 -0.17 1.79 16 10 H 0.10 1.45 7.58 -51.93 -0.39 1.05 16 11 N -0.72 -10.46 4.18 -53.69 -0.22 -10.68 16 12 C 0.53 10.38 7.82 -10.99 -0.09 10.29 16 13 O -0.52 -12.02 15.52 5.56 0.09 -11.93 16 14 C -0.15 -3.20 6.16 36.00 0.22 -2.98 16 15 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 16 C -0.54 -15.53 9.50 30.94 0.29 -15.23 16 17 H 0.07 1.95 7.80 -52.48 -0.41 1.54 16 18 C 0.07 2.13 5.49 -17.43 -0.10 2.04 16 19 N -0.87 -26.47 13.22 55.49 0.73 -25.73 16 20 Si 0.92 21.64 29.55 -169.99 -5.02 16.61 16 21 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 23 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 24 C 0.10 0.97 3.35 -26.65 -0.09 0.88 16 25 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 26 O -0.56 -5.56 13.15 -35.23 -0.46 -6.02 16 27 C 0.02 0.19 4.89 -3.84 -0.02 0.17 16 28 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.41 8.09 -51.93 -0.42 -0.01 16 30 H 0.06 0.44 6.66 -51.93 -0.35 0.09 16 31 H 0.06 0.39 7.79 -51.93 -0.40 -0.01 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.11 0.89 7.85 -52.49 -0.41 0.48 16 35 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.04 0.35 5.65 -51.93 -0.29 0.06 16 37 H 0.08 0.83 6.49 -51.93 -0.34 0.49 16 38 H 0.04 0.43 7.69 -51.93 -0.40 0.03 16 39 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 40 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.39 4.93 7.02 -40.82 -0.29 4.65 16 42 H 0.09 1.67 8.14 -51.91 -0.42 1.25 16 43 H 0.09 1.76 8.14 -51.92 -0.42 1.33 16 44 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 45 H 0.38 1.98 9.08 45.56 0.41 2.40 16 46 H 0.04 0.37 6.64 -51.93 -0.34 0.03 16 47 H 0.08 0.50 8.12 -51.93 -0.42 0.08 16 LS Contribution 388.35 15.07 5.85 5.85 Total: -1.00 -34.94 388.35 -9.70 -44.64 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: -6.99 Total: 4.43 kcal Atomic # 6 Polarization: -7.30 SS G_CDS: -0.33 Total: -7.62 kcal Atomic # 7 Polarization: -41.51 SS G_CDS: -0.62 Total: -42.14 kcal Atomic # 8 Polarization: -17.58 SS G_CDS: -0.38 Total: -17.96 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.61 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -34.94 -9.70 -44.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099686382.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.638 kcal (2) G-P(sol) polarization free energy of solvation -34.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds