Wall clock time and date at job start Tue Mar 31 2020 16:23:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.50702 * 119.99790 * 2 1 4 4 C 1.30991 * 120.00409 * 179.97438 * 2 1 3 5 5 C 1.50705 * 120.00108 * 353.78842 * 4 2 1 6 6 N 1.46891 * 109.47373 * 235.79350 * 5 4 2 7 7 C 1.46850 * 110.99994 * 45.79080 * 6 5 4 8 8 C 1.53040 * 109.52277 * 185.83573 * 7 6 5 9 9 C 1.53114 * 109.28083 * 300.82200 * 8 7 6 10 10 H 1.09002 * 109.52297 * 177.56117 * 9 8 7 11 11 N 1.46499 * 109.57138 * 297.71393 * 9 8 7 12 12 C 1.34776 * 120.00336 * 274.71486 * 11 9 8 13 13 O 1.21279 * 119.99611 * 0.02562 * 12 11 9 14 14 C 1.50697 * 119.99879 * 180.02562 * 12 11 9 15 15 S 1.81002 * 109.46940 * 180.02562 * 14 12 11 16 16 C 1.76196 * 99.99978 * 179.97438 * 15 14 12 17 17 H 1.08007 * 120.00163 * 0.02562 * 16 15 14 18 18 C 1.38805 * 120.00015 * 180.02562 * 16 15 14 19 19 N 1.31631 * 119.99825 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99854 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46971 * 60.00036 * 20 18 16 22 22 H 1.48505 * 109.47071 * 179.97438 * 20 18 16 23 23 H 1.48492 * 109.47261 * 299.99744 * 20 18 16 24 24 C 1.53116 * 109.16153 * 57.65181 * 9 8 7 25 25 H 1.09007 * 109.50578 * 62.28929 * 24 9 8 26 26 O 1.42902 * 109.53601 * 182.38652 * 24 9 8 27 27 C 1.46848 * 111.00153 * 169.99886 * 6 5 4 28 28 H 1.08995 * 109.47387 * 265.02633 * 1 2 3 29 29 H 1.09004 * 109.47312 * 25.02973 * 1 2 3 30 30 H 1.09007 * 109.46591 * 145.02774 * 1 2 3 31 31 H 1.08997 * 109.47025 * 180.02562 * 3 2 1 32 32 H 1.09006 * 109.47245 * 299.99389 * 3 2 1 33 33 H 1.08996 * 109.47819 * 59.99104 * 3 2 1 34 34 H 1.07998 * 120.00440 * 173.78845 * 4 2 1 35 35 H 1.08999 * 109.47133 * 115.79248 * 5 4 2 36 36 H 1.09006 * 109.46493 * 355.79746 * 5 4 2 37 37 H 1.08999 * 109.46155 * 305.85119 * 7 6 5 38 38 H 1.08999 * 109.46248 * 65.81945 * 7 6 5 39 39 H 1.08998 * 109.50108 * 180.87285 * 8 7 6 40 40 H 1.09005 * 109.53007 * 60.77997 * 8 7 6 41 41 H 0.97009 * 119.99773 * 94.72233 * 11 9 8 42 42 H 1.09006 * 109.47176 * 299.99699 * 14 12 11 43 43 H 1.08996 * 109.47275 * 59.99736 * 14 12 11 44 44 H 0.96997 * 119.99522 * 180.02562 * 19 18 16 45 45 H 0.96702 * 113.99779 * 179.82384 * 26 24 9 46 46 H 1.09005 * 109.46023 * 294.18329 * 27 6 5 47 47 H 1.09001 * 109.46143 * 54.14172 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2604 1.3051 0.0000 4 6 2.1620 -1.1344 0.0005 5 6 1.4152 -2.4357 0.1423 6 7 1.9522 -3.1864 1.2850 7 6 2.1205 -2.3150 2.4549 8 6 2.8144 -3.0922 3.5760 9 6 1.9674 -4.3136 3.9436 10 1 2.4789 -4.8937 4.7117 11 7 0.6647 -3.8733 4.4491 12 6 0.5204 -3.5513 5.7499 13 8 1.4690 -3.6256 6.5018 14 6 -0.8198 -3.0989 6.2698 15 16 -0.6910 -2.7421 8.0397 16 6 -2.3494 -2.2495 8.3739 17 1 -3.0806 -2.2401 7.5790 18 6 -2.7161 -1.8736 9.6588 19 7 -1.8251 -1.8856 10.6276 20 14 -4.4742 -1.3507 10.0129 21 1 -5.3976 -2.4675 9.6884 22 1 -4.6066 -1.0012 11.4502 23 1 -4.8159 -0.1685 9.1820 24 6 1.7664 -5.1795 2.6970 25 1 2.7329 -5.5399 2.3444 26 8 0.9304 -6.2931 3.0183 27 6 1.1030 -4.3419 1.6014 28 1 -0.3634 -0.0891 1.0237 29 1 -0.3634 0.9312 -0.4348 30 1 -0.3633 -0.8422 -0.5891 31 1 3.3321 1.1060 -0.0005 32 1 1.9972 1.8767 -0.8901 33 1 1.9971 1.8769 0.8898 34 1 3.2372 -1.1372 -0.1007 35 1 1.5346 -3.0241 -0.7674 36 1 0.3572 -2.2313 0.3066 37 1 2.7282 -1.4526 2.1809 38 1 1.1434 -1.9760 2.7989 39 1 2.9252 -2.4497 4.4495 40 1 3.7976 -3.4196 3.2379 41 1 -0.0940 -3.8136 3.8476 42 1 -1.1301 -2.1985 5.7397 43 1 -1.5561 -3.8865 6.1102 44 1 -2.0816 -1.6233 11.5255 45 1 0.7585 -6.8840 2.2724 46 1 0.1305 -3.9934 1.9494 47 1 0.9715 -4.9516 0.7075 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099686382.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:23:07 Heat of formation + Delta-G solvation = -98.003935 kcal Electronic energy + Delta-G solvation = -26265.182049 eV Core-core repulsion = 22573.115938 eV Total energy + Delta-G solvation = -3692.066111 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.47290 -39.81962 -38.16872 -36.59968 -35.42158 -34.59767 -32.93133 -30.95013 -30.55887 -29.05348 -28.54086 -27.66475 -25.74678 -24.22663 -23.01410 -22.30984 -20.23695 -19.90598 -18.84423 -18.21212 -18.08198 -17.26407 -16.90078 -16.86499 -16.52061 -16.30252 -16.07226 -15.75286 -15.27784 -15.01845 -14.85488 -14.76489 -14.54265 -14.21128 -14.02114 -13.81413 -13.53428 -13.28358 -13.24280 -13.18641 -12.96717 -12.87944 -12.73607 -12.66237 -12.46237 -12.27526 -12.19924 -11.77776 -11.73117 -11.44513 -11.14188 -11.03393 -10.87749 -10.30411 -10.13083 -9.60910 -9.30068 -8.68365 -8.35652 -6.14201 1.19215 1.24944 1.42914 1.45121 1.55207 1.60729 2.24012 2.27673 2.81659 2.98161 3.21404 3.30946 3.65849 3.77693 3.86693 3.94286 4.06353 4.08072 4.15896 4.23403 4.25058 4.36512 4.41742 4.45814 4.51064 4.58544 4.65597 4.68471 4.77781 4.81631 4.84858 4.89971 4.95649 4.98086 5.02922 5.08801 5.12486 5.19657 5.39717 5.48714 5.72411 5.85829 6.02724 6.14514 6.18156 6.45327 6.89782 7.05086 7.22542 8.73461 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.011903 B = 0.002948 C = 0.002579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2351.816326 B = 9494.213520 C =10854.506672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.133 4.133 3 C -0.119 4.119 4 C -0.169 4.169 5 C 0.082 3.918 6 N -0.526 5.526 7 C 0.065 3.935 8 C -0.120 4.120 9 C 0.148 3.852 10 H 0.066 0.934 11 N -0.699 5.699 12 C 0.535 3.465 13 O -0.563 6.563 14 C -0.129 4.129 15 S -0.146 6.146 16 C -0.550 4.550 17 H 0.081 0.919 18 C 0.014 3.986 19 N -0.911 5.911 20 Si 0.999 3.001 21 H -0.262 1.262 22 H -0.278 1.278 23 H -0.261 1.261 24 C 0.114 3.886 25 H 0.093 0.907 26 O -0.576 6.576 27 C 0.027 3.973 28 H 0.057 0.943 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.064 0.936 32 H 0.072 0.928 33 H 0.064 0.936 34 H 0.114 0.886 35 H 0.093 0.907 36 H 0.046 0.954 37 H 0.084 0.916 38 H 0.023 0.977 39 H 0.055 0.945 40 H 0.096 0.904 41 H 0.407 0.593 42 H 0.106 0.894 43 H 0.104 0.896 44 H 0.272 0.728 45 H 0.399 0.601 46 H 0.036 0.964 47 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.764 -1.332 -29.412 30.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.134 4.134 3 C -0.176 4.176 4 C -0.187 4.187 5 C -0.044 4.044 6 N -0.252 5.252 7 C -0.063 4.063 8 C -0.159 4.159 9 C 0.043 3.957 10 H 0.084 0.916 11 N -0.353 5.353 12 C 0.321 3.679 13 O -0.442 6.442 14 C -0.280 4.280 15 S 0.081 5.919 16 C -0.697 4.697 17 H 0.099 0.901 18 C -0.191 4.191 19 N -0.547 5.547 20 Si 0.820 3.180 21 H -0.187 1.187 22 H -0.203 1.203 23 H -0.186 1.186 24 C 0.054 3.946 25 H 0.110 0.890 26 O -0.384 6.384 27 C -0.101 4.101 28 H 0.076 0.924 29 H 0.088 0.912 30 H 0.091 0.909 31 H 0.083 0.917 32 H 0.091 0.909 33 H 0.083 0.917 34 H 0.132 0.868 35 H 0.111 0.889 36 H 0.064 0.936 37 H 0.103 0.897 38 H 0.042 0.958 39 H 0.074 0.926 40 H 0.115 0.885 41 H 0.244 0.756 42 H 0.124 0.876 43 H 0.122 0.878 44 H 0.081 0.919 45 H 0.250 0.750 46 H 0.054 0.946 47 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 7.849 -1.367 -27.558 28.687 hybrid contribution -2.891 0.527 -0.603 3.000 sum 4.958 -0.840 -28.161 28.606 Atomic orbital electron populations 1.20898 0.92237 1.03043 1.01800 1.21846 0.96185 0.95592 0.99827 1.20871 0.99604 0.94703 1.02377 1.22555 0.99972 0.93024 1.03152 1.21248 0.96347 0.92868 0.93922 1.61980 1.49061 1.08610 1.05557 1.21971 0.99044 0.95608 0.89691 1.21885 0.99881 0.96207 0.97956 1.21077 0.84052 0.94970 0.95623 0.91558 1.45709 1.13252 1.67965 1.08344 1.20020 0.89135 0.76267 0.82472 1.90677 1.42211 1.53724 1.57544 1.23352 0.98114 1.05110 1.01414 1.85545 1.16614 1.87158 1.02547 1.23177 0.95691 1.52332 0.98540 0.90056 1.26140 1.03631 0.94653 0.94655 1.70178 1.36533 1.46009 1.02003 0.84999 0.76358 0.79116 0.77491 1.18685 1.20251 1.18582 1.21896 0.94887 0.86030 0.91804 0.88952 1.86609 1.71554 1.38613 1.41584 1.22823 0.94353 0.93406 0.99532 0.92448 0.91223 0.90902 0.91697 0.90926 0.91675 0.86773 0.88863 0.93635 0.89724 0.95847 0.92633 0.88526 0.75584 0.87617 0.87772 0.91931 0.75046 0.94559 0.87516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.60 8.94 71.23 0.64 -0.96 16 2 C -0.13 -1.86 6.05 -16.48 -0.10 -1.96 16 3 C -0.12 -1.47 10.09 71.24 0.72 -0.75 16 4 C -0.17 -2.32 7.13 25.66 0.18 -2.14 16 5 C 0.08 1.05 5.35 85.56 0.46 1.51 16 6 N -0.53 -7.76 4.80 -900.92 -4.32 -12.08 16 7 C 0.06 1.24 4.94 86.33 0.43 1.67 16 8 C -0.12 -2.72 5.77 30.65 0.18 -2.54 16 9 C 0.15 3.68 2.51 45.07 0.11 3.79 16 10 H 0.07 2.07 7.58 -2.39 -0.02 2.05 16 11 N -0.70 -19.80 4.18 -442.17 -1.85 -21.65 16 12 C 0.54 21.09 7.82 87.66 0.69 21.78 16 13 O -0.56 -27.23 15.52 -3.03 -0.05 -27.27 16 14 C -0.13 -5.40 6.16 71.23 0.44 -4.96 16 15 S -0.15 -8.33 20.57 -56.49 -1.16 -9.49 16 16 C -0.55 -32.06 9.50 67.96 0.65 -31.42 16 17 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16 18 C 0.01 0.81 5.49 84.86 0.47 1.28 16 19 N -0.91 -56.72 13.22 21.65 0.29 -56.44 16 20 Si 1.00 44.08 29.55 68.60 2.03 46.11 16 21 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 22 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 23 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 24 C 0.11 1.89 3.35 30.64 0.10 1.99 16 25 H 0.09 1.31 8.14 -2.38 -0.02 1.29 16 26 O -0.58 -10.12 13.15 -148.98 -1.96 -12.08 16 27 C 0.03 0.36 4.89 86.32 0.42 0.78 16 28 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.07 0.80 8.09 -2.38 -0.02 0.78 16 30 H 0.07 0.82 6.66 -2.38 -0.02 0.80 16 31 H 0.06 0.75 7.79 -2.39 -0.02 0.73 16 32 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16 33 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.11 1.58 7.85 -2.91 -0.02 1.56 16 35 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.05 0.59 5.65 -2.38 -0.01 0.58 16 37 H 0.08 1.61 6.49 -2.39 -0.02 1.59 16 38 H 0.02 0.51 7.69 -2.39 -0.02 0.49 16 39 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 40 H 0.10 1.86 8.14 -2.38 -0.02 1.84 16 41 H 0.41 9.51 7.02 -92.70 -0.65 8.86 16 42 H 0.11 4.01 8.14 -2.39 -0.02 3.99 16 43 H 0.10 4.04 8.14 -2.40 -0.02 4.02 16 44 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 45 H 0.40 2.91 9.08 -74.06 -0.67 2.24 16 46 H 0.04 0.53 6.64 -2.38 -0.02 0.52 16 47 H 0.11 0.87 8.12 -2.39 -0.02 0.85 16 Total: -1.00 -78.09 388.35 -2.00 -80.09 By element: Atomic # 1 Polarization: 25.11 SS G_CDS: -0.35 Total: 24.76 kcal Atomic # 6 Polarization: -17.32 SS G_CDS: 5.37 Total: -11.95 kcal Atomic # 7 Polarization: -84.28 SS G_CDS: -5.88 Total: -90.17 kcal Atomic # 8 Polarization: -37.35 SS G_CDS: -2.01 Total: -39.36 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Atomic # 16 Polarization: -8.33 SS G_CDS: -1.16 Total: -9.49 kcal Total: -78.09 -2.00 -80.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099686382.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.914 kcal (2) G-P(sol) polarization free energy of solvation -78.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds