Wall clock time and date at job start Tue Mar 31 2020 15:10:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53006 * 109.46978 * 2 1 4 4 C 1.50692 * 109.47502 * 120.00328 * 2 1 3 5 5 O 1.34271 * 126.43894 * 300.02562 * 4 2 1 6 6 C 1.34476 * 108.17687 * 179.97438 * 5 4 2 7 7 C 1.47869 * 125.49591 * 179.97438 * 6 5 4 8 8 C 1.39549 * 120.14348 * 359.72478 * 7 6 5 9 9 C 1.37965 * 119.85752 * 179.74420 * 8 7 6 10 10 C 1.38351 * 120.14021 * 0.50991 * 9 8 7 11 11 C 1.38348 * 120.29084 * 359.77041 * 10 9 8 12 12 C 1.37969 * 120.13949 * 359.97040 * 11 10 9 13 13 N 1.30905 * 109.01548 * 0.02562 * 6 5 4 14 14 C 1.35784 * 108.41339 * 359.75173 * 13 6 5 15 15 C 1.47466 * 126.36022 * 180.24876 * 14 13 6 16 16 O 1.21609 * 119.99398 * 175.22979 * 15 14 13 17 17 N 1.34771 * 120.00281 * 355.23152 * 15 14 13 18 18 C 1.46497 * 120.00091 * 2.51195 * 17 15 14 19 19 C 1.46494 * 119.99803 * 182.51318 * 17 15 14 20 20 C 1.50702 * 109.47112 * 90.00188 * 19 17 15 21 21 H 1.07995 * 120.00003 * 359.97438 * 20 19 17 22 22 C 1.37877 * 119.99671 * 179.97438 * 20 19 17 23 23 N 1.31518 * 120.00451 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 119.99615 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47129 * 59.99958 * 24 22 20 26 26 H 1.48503 * 109.47117 * 179.97438 * 24 22 20 27 27 H 1.48498 * 109.47139 * 299.99639 * 24 22 20 28 28 H 1.08997 * 109.46883 * 59.99556 * 1 2 3 29 29 H 1.08994 * 109.46697 * 299.99359 * 1 2 3 30 30 H 1.09001 * 109.46413 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47152 * 240.00639 * 2 1 3 32 32 H 1.08996 * 109.46464 * 60.00439 * 3 2 1 33 33 H 1.09000 * 109.46881 * 180.02562 * 3 2 1 34 34 H 1.08997 * 109.47292 * 300.00339 * 3 2 1 35 35 H 1.08001 * 120.06895 * 359.97438 * 8 7 6 36 36 H 1.07998 * 119.92778 * 180.23573 * 9 8 7 37 37 H 1.07999 * 119.85250 * 179.74353 * 10 9 8 38 38 H 1.07997 * 119.93450 * 179.97438 * 11 10 9 39 39 H 1.08006 * 120.07299 * 180.02562 * 12 11 10 40 40 H 1.09002 * 109.47421 * 83.87936 * 18 17 15 41 41 H 1.09001 * 109.47279 * 203.88435 * 18 17 15 42 42 H 1.09001 * 109.47210 * 323.88434 * 18 17 15 43 43 H 1.09006 * 109.47150 * 209.99989 * 19 17 15 44 44 H 1.08993 * 109.47449 * 329.99718 * 19 17 15 45 45 H 0.96996 * 119.99910 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7104 1.2303 5 8 1.7887 -0.3666 2.5052 6 6 2.4128 -1.2498 3.3045 7 6 2.3983 -1.2293 4.7830 8 6 1.6998 -0.2309 5.4631 9 6 1.6858 -0.2205 6.8427 10 6 2.3711 -1.1909 7.5517 11 6 3.0703 -2.1802 6.8835 12 6 3.0878 -2.2049 5.5041 13 7 3.0362 -2.1300 2.5627 14 6 2.8150 -1.8252 1.2582 15 6 3.3288 -2.5623 0.0889 16 8 2.9874 -2.2379 -1.0323 17 7 4.1766 -3.5955 0.2628 18 6 4.5446 -4.0213 1.6153 19 6 4.7301 -4.2925 -0.9008 20 6 6.0195 -3.6319 -1.3156 21 1 6.3894 -2.7780 -0.7677 22 6 6.7269 -4.1178 -2.3948 23 7 6.2767 -5.1580 -3.0618 24 14 8.3248 -3.2985 -2.9094 25 1 9.2957 -3.3587 -1.7874 26 1 8.8866 -4.0059 -4.0881 27 1 8.0627 -1.8799 -3.2617 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3632 0.5137 0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8901 32 1 1.6767 1.9562 0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6766 1.9564 -0.8899 35 1 1.1682 0.5299 4.9108 36 1 1.1425 0.5495 7.3702 37 1 2.3604 -1.1759 8.6315 38 1 3.6035 -2.9347 7.4427 39 1 3.6337 -2.9780 4.9836 40 1 3.7814 -4.6954 2.0043 41 1 5.5042 -4.5375 1.5852 42 1 4.6221 -3.1479 2.2628 43 1 4.9220 -5.3341 -0.6429 44 1 4.0174 -4.2476 -1.7242 45 1 6.7742 -5.4996 -3.8212 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001115926065.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:10:56 Heat of formation + Delta-G solvation = 13.827148 kcal Electronic energy + Delta-G solvation = -27777.000171 eV Core-core repulsion = 23954.339468 eV Total energy + Delta-G solvation = -3822.660703 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.32881 -39.30276 -38.73497 -35.84644 -34.74739 -34.57603 -32.55686 -32.18085 -31.24979 -28.83058 -27.76201 -27.21945 -25.83208 -24.22830 -24.21242 -22.93201 -21.89929 -21.53899 -20.38857 -19.04258 -17.52109 -16.82995 -16.60632 -16.43424 -16.02347 -15.57736 -15.18615 -15.02527 -14.67239 -14.33169 -14.24380 -14.04515 -13.72983 -13.49572 -13.35873 -13.02304 -12.72489 -12.33625 -12.28474 -12.25611 -11.97538 -11.78741 -11.54551 -11.36650 -11.31532 -11.21458 -11.15425 -11.03063 -10.86814 -10.56849 -10.22608 -10.00053 -9.75496 -9.59112 -9.27712 -9.09013 -8.41440 -8.27854 -7.57608 -6.02431 -4.07400 0.47808 1.08791 1.49652 2.38546 2.42365 3.33917 3.37544 3.40758 3.54949 3.64458 3.90042 4.06017 4.46284 4.49877 4.64460 4.67514 4.80479 4.86467 5.06092 5.07690 5.10923 5.20826 5.27166 5.31683 5.46449 5.55452 5.59353 5.72008 5.73641 5.78052 5.84138 5.91265 6.01791 6.09737 6.15213 6.16255 6.17852 6.20588 6.26270 6.39488 6.58540 6.67991 7.08369 7.44430 7.53056 7.62256 7.94016 8.24317 8.41440 8.87715 9.04902 9.57363 11.05529 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.012332 B = 0.003491 C = 0.002954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2269.972958 B = 8017.983847 C = 9476.400005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.029 4.029 3 C -0.145 4.145 4 C 0.044 3.956 5 O -0.191 6.191 6 C 0.213 3.787 7 C -0.009 4.009 8 C -0.093 4.093 9 C -0.122 4.122 10 C -0.106 4.106 11 C -0.120 4.120 12 C -0.072 4.072 13 N -0.434 5.434 14 C -0.050 4.050 15 C 0.586 3.414 16 O -0.537 6.537 17 N -0.579 5.579 18 C 0.080 3.920 19 C 0.244 3.756 20 C -0.527 4.527 21 H 0.057 0.943 22 C 0.062 3.938 23 N -0.895 5.895 24 Si 0.899 3.101 25 H -0.277 1.277 26 H -0.286 1.286 27 H -0.276 1.276 28 H 0.069 0.931 29 H 0.055 0.945 30 H 0.060 0.940 31 H 0.141 0.859 32 H 0.055 0.945 33 H 0.060 0.940 34 H 0.069 0.931 35 H 0.130 0.870 36 H 0.128 0.872 37 H 0.126 0.874 38 H 0.132 0.868 39 H 0.141 0.859 40 H 0.042 0.958 41 H 0.066 0.934 42 H 0.087 0.913 43 H 0.035 0.965 44 H 0.046 0.954 45 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.131 10.337 19.544 24.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.047 4.047 3 C -0.203 4.203 4 C -0.012 4.012 5 O -0.077 6.077 6 C 0.009 3.991 7 C -0.010 4.010 8 C -0.112 4.112 9 C -0.140 4.140 10 C -0.124 4.124 11 C -0.138 4.138 12 C -0.091 4.091 13 N -0.164 5.164 14 C -0.173 4.173 15 C 0.372 3.628 16 O -0.416 6.416 17 N -0.309 5.309 18 C -0.064 4.064 19 C 0.126 3.874 20 C -0.566 4.566 21 H 0.075 0.925 22 C -0.140 4.140 23 N -0.534 5.534 24 Si 0.726 3.274 25 H -0.202 1.202 26 H -0.211 1.211 27 H -0.202 1.202 28 H 0.088 0.912 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.158 0.842 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.088 0.912 35 H 0.147 0.853 36 H 0.146 0.854 37 H 0.144 0.856 38 H 0.150 0.850 39 H 0.159 0.841 40 H 0.061 0.939 41 H 0.085 0.915 42 H 0.105 0.895 43 H 0.053 0.947 44 H 0.064 0.936 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -10.887 9.843 18.998 24.007 hybrid contribution 0.632 0.859 -0.413 1.144 sum -10.255 10.702 18.585 23.772 Atomic orbital electron populations 1.21832 0.93386 1.02570 1.02293 1.20360 0.96516 0.96296 0.91569 1.21850 1.01867 0.94247 1.02299 1.23817 0.98104 0.96047 0.83265 1.84276 1.58995 1.48181 1.16292 1.23780 0.95087 0.87487 0.92776 1.17291 1.01655 0.98204 0.83839 1.21237 0.97921 0.97341 0.94720 1.21055 1.00113 0.99370 0.93468 1.21350 0.96384 0.94452 1.00258 1.21134 0.99786 0.99141 0.93749 1.21252 0.96737 0.97230 0.93900 1.71229 1.19529 1.24179 1.01440 1.21959 1.04578 0.98691 0.92024 1.16694 0.79907 0.80680 0.85555 1.90687 1.60318 1.67116 1.23476 1.47981 1.42871 1.30909 1.09091 1.22001 0.99687 1.01126 0.83591 1.19381 0.94043 0.91604 0.82407 1.21392 1.06326 1.14899 1.13975 0.92470 1.24924 0.98105 0.95027 0.95941 1.69925 1.39308 1.23854 1.20273 0.86551 0.83189 0.79660 0.77990 1.20230 1.21144 1.20156 0.91178 0.92603 0.92119 0.84198 0.92589 0.92038 0.91154 0.85255 0.85366 0.85594 0.85045 0.84144 0.93938 0.91537 0.89470 0.94678 0.93578 0.92638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 9.18 37.16 0.34 -1.33 16 2 C -0.03 -0.42 3.23 -91.77 -0.30 -0.72 16 3 C -0.15 -1.76 9.18 37.16 0.34 -1.41 16 4 C 0.04 0.72 5.94 -35.03 -0.21 0.51 16 5 O -0.19 -2.84 10.45 5.32 0.06 -2.79 16 6 C 0.21 3.18 7.88 -14.01 -0.11 3.07 16 7 C -0.01 -0.10 5.87 -104.98 -0.62 -0.72 16 8 C -0.09 -0.89 9.71 -39.19 -0.38 -1.27 16 9 C -0.12 -0.93 10.03 -39.64 -0.40 -1.33 16 10 C -0.11 -0.76 10.04 -39.50 -0.40 -1.16 16 11 C -0.12 -0.98 10.03 -39.64 -0.40 -1.37 16 12 C -0.07 -0.76 9.68 -39.19 -0.38 -1.14 16 13 N -0.43 -7.42 7.44 -8.26 -0.06 -7.48 16 14 C -0.05 -0.97 6.67 -83.08 -0.55 -1.52 16 15 C 0.59 13.43 7.67 -12.50 -0.10 13.34 16 16 O -0.54 -13.50 14.03 5.27 0.07 -13.43 16 17 N -0.58 -13.53 2.86 -184.22 -0.53 -14.05 16 18 C 0.08 1.52 9.58 59.85 0.57 2.09 16 19 C 0.24 6.64 5.15 -5.20 -0.03 6.61 16 20 C -0.53 -15.32 9.39 -34.44 -0.32 -15.65 16 21 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 22 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 23 N -0.89 -26.84 13.29 55.43 0.74 -26.10 16 24 Si 0.90 22.13 29.54 -169.99 -5.02 17.11 16 25 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 26 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 27 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 28 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.14 2.42 5.52 -51.93 -0.29 2.13 16 32 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.13 1.12 7.89 -52.49 -0.41 0.71 16 36 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 37 H 0.13 0.58 8.06 -52.49 -0.42 0.16 16 38 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 39 H 0.14 1.51 7.82 -52.48 -0.41 1.10 16 40 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 41 H 0.07 1.25 8.03 -51.93 -0.42 0.83 16 42 H 0.09 1.59 5.33 -51.93 -0.28 1.31 16 43 H 0.04 0.96 8.07 -51.93 -0.42 0.54 16 44 H 0.05 1.38 7.39 -51.93 -0.38 0.99 16 45 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 380.95 15.07 5.74 5.74 Total: -1.00 -33.34 380.95 -8.41 -41.75 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: -6.38 Total: -0.44 kcal Atomic # 6 Polarization: 2.72 SS G_CDS: -3.03 Total: -0.30 kcal Atomic # 7 Polarization: -47.79 SS G_CDS: 0.15 Total: -47.64 kcal Atomic # 8 Polarization: -16.35 SS G_CDS: 0.13 Total: -16.22 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.34 -8.41 -41.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115926065.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.577 kcal (2) G-P(sol) polarization free energy of solvation -33.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.749 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds