Wall clock time and date at job start Tue Mar 31 2020 15:10:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53006 * 109.46978 * 2 1 4 4 C 1.50692 * 109.47502 * 120.00328 * 2 1 3 5 5 O 1.34271 * 126.43894 * 300.02562 * 4 2 1 6 6 C 1.34476 * 108.17687 * 179.97438 * 5 4 2 7 7 C 1.47869 * 125.49591 * 179.97438 * 6 5 4 8 8 C 1.39549 * 120.14348 * 359.72478 * 7 6 5 9 9 C 1.37965 * 119.85752 * 179.74420 * 8 7 6 10 10 C 1.38351 * 120.14021 * 0.50991 * 9 8 7 11 11 C 1.38348 * 120.29084 * 359.77041 * 10 9 8 12 12 C 1.37969 * 120.13949 * 359.97040 * 11 10 9 13 13 N 1.30905 * 109.01548 * 0.02562 * 6 5 4 14 14 C 1.35784 * 108.41339 * 359.75173 * 13 6 5 15 15 C 1.47466 * 126.36022 * 180.24876 * 14 13 6 16 16 O 1.21609 * 119.99398 * 175.22979 * 15 14 13 17 17 N 1.34771 * 120.00281 * 355.23152 * 15 14 13 18 18 C 1.46497 * 120.00091 * 2.51195 * 17 15 14 19 19 C 1.46494 * 119.99803 * 182.51318 * 17 15 14 20 20 C 1.50702 * 109.47112 * 90.00188 * 19 17 15 21 21 H 1.07995 * 120.00003 * 359.97438 * 20 19 17 22 22 C 1.37877 * 119.99671 * 179.97438 * 20 19 17 23 23 N 1.31518 * 120.00451 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 119.99615 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47129 * 59.99958 * 24 22 20 26 26 H 1.48503 * 109.47117 * 179.97438 * 24 22 20 27 27 H 1.48498 * 109.47139 * 299.99639 * 24 22 20 28 28 H 1.08997 * 109.46883 * 59.99556 * 1 2 3 29 29 H 1.08994 * 109.46697 * 299.99359 * 1 2 3 30 30 H 1.09001 * 109.46413 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47152 * 240.00639 * 2 1 3 32 32 H 1.08996 * 109.46464 * 60.00439 * 3 2 1 33 33 H 1.09000 * 109.46881 * 180.02562 * 3 2 1 34 34 H 1.08997 * 109.47292 * 300.00339 * 3 2 1 35 35 H 1.08001 * 120.06895 * 359.97438 * 8 7 6 36 36 H 1.07998 * 119.92778 * 180.23573 * 9 8 7 37 37 H 1.07999 * 119.85250 * 179.74353 * 10 9 8 38 38 H 1.07997 * 119.93450 * 179.97438 * 11 10 9 39 39 H 1.08006 * 120.07299 * 180.02562 * 12 11 10 40 40 H 1.09002 * 109.47421 * 83.87936 * 18 17 15 41 41 H 1.09001 * 109.47279 * 203.88435 * 18 17 15 42 42 H 1.09001 * 109.47210 * 323.88434 * 18 17 15 43 43 H 1.09006 * 109.47150 * 209.99989 * 19 17 15 44 44 H 1.08993 * 109.47449 * 329.99718 * 19 17 15 45 45 H 0.96996 * 119.99910 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7104 1.2303 5 8 1.7887 -0.3666 2.5052 6 6 2.4128 -1.2498 3.3045 7 6 2.3983 -1.2293 4.7830 8 6 1.6998 -0.2309 5.4631 9 6 1.6858 -0.2205 6.8427 10 6 2.3711 -1.1909 7.5517 11 6 3.0703 -2.1802 6.8835 12 6 3.0878 -2.2049 5.5041 13 7 3.0362 -2.1300 2.5627 14 6 2.8150 -1.8252 1.2582 15 6 3.3288 -2.5623 0.0889 16 8 2.9874 -2.2379 -1.0323 17 7 4.1766 -3.5955 0.2628 18 6 4.5446 -4.0213 1.6153 19 6 4.7301 -4.2925 -0.9008 20 6 6.0195 -3.6319 -1.3156 21 1 6.3894 -2.7780 -0.7677 22 6 6.7269 -4.1178 -2.3948 23 7 6.2767 -5.1580 -3.0618 24 14 8.3248 -3.2985 -2.9094 25 1 9.2957 -3.3587 -1.7874 26 1 8.8866 -4.0059 -4.0881 27 1 8.0627 -1.8799 -3.2617 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3632 0.5137 0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8901 32 1 1.6767 1.9562 0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6766 1.9564 -0.8899 35 1 1.1682 0.5299 4.9108 36 1 1.1425 0.5495 7.3702 37 1 2.3604 -1.1759 8.6315 38 1 3.6035 -2.9347 7.4427 39 1 3.6337 -2.9780 4.9836 40 1 3.7814 -4.6954 2.0043 41 1 5.5042 -4.5375 1.5852 42 1 4.6221 -3.1479 2.2628 43 1 4.9220 -5.3341 -0.6429 44 1 4.0174 -4.2476 -1.7242 45 1 6.7742 -5.4996 -3.8212 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001115926065.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:10:55 Heat of formation + Delta-G solvation = -6.031539 kcal Electronic energy + Delta-G solvation = -27777.861308 eV Core-core repulsion = 23954.339468 eV Total energy + Delta-G solvation = -3823.521840 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -44.59485 -40.58713 -39.94621 -37.17069 -36.34210 -36.01968 -34.66880 -33.09039 -31.91759 -30.26058 -29.56056 -28.17219 -27.51602 -26.02915 -25.18546 -24.14465 -23.15422 -22.46701 -21.70869 -20.46151 -18.75925 -18.65849 -18.04660 -17.97392 -17.20846 -16.93892 -16.46937 -16.24430 -16.11055 -15.97077 -15.58786 -14.99892 -14.59800 -14.52547 -14.37559 -14.34616 -14.24932 -13.85297 -13.81473 -13.68357 -13.30291 -13.13875 -12.99036 -12.68700 -12.57898 -12.47110 -12.39269 -12.31027 -12.28041 -12.06664 -12.02025 -11.80023 -11.44820 -10.83236 -10.72291 -10.66770 -9.93467 -9.59368 -9.25468 -8.25318 -6.41090 -0.43742 0.20297 0.43645 1.21641 1.24447 1.35486 1.39622 1.47530 2.07576 2.25900 2.38252 2.67275 2.85853 3.03836 3.32747 3.54401 3.80886 4.01023 4.01983 4.02710 4.04865 4.24573 4.38174 4.43621 4.48810 4.52747 4.59007 4.64338 4.67908 4.70668 4.80931 4.82089 4.91079 4.91943 5.05021 5.10329 5.14953 5.17661 5.21686 5.27498 5.41800 5.49020 5.52384 5.54922 5.76652 5.96196 6.00068 6.29353 6.59169 6.66123 7.14055 7.32193 8.81972 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.012332 B = 0.003491 C = 0.002954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2269.972958 B = 8017.983847 C = 9476.400005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.035 4.035 3 C -0.139 4.139 4 C 0.058 3.942 5 O -0.181 6.181 6 C 0.231 3.769 7 C -0.043 4.043 8 C -0.094 4.094 9 C -0.119 4.119 10 C -0.093 4.093 11 C -0.122 4.122 12 C -0.085 4.085 13 N -0.455 5.455 14 C -0.087 4.087 15 C 0.580 3.420 16 O -0.572 6.572 17 N -0.591 5.591 18 C 0.086 3.914 19 C 0.261 3.739 20 C -0.548 4.548 21 H 0.050 0.950 22 C 0.012 3.988 23 N -0.925 5.925 24 Si 0.970 3.030 25 H -0.263 1.263 26 H -0.274 1.274 27 H -0.276 1.276 28 H 0.091 0.909 29 H 0.073 0.927 30 H 0.046 0.954 31 H 0.107 0.893 32 H 0.074 0.926 33 H 0.042 0.958 34 H 0.092 0.908 35 H 0.137 0.863 36 H 0.160 0.840 37 H 0.160 0.840 38 H 0.154 0.846 39 H 0.129 0.871 40 H 0.058 0.942 41 H 0.065 0.935 42 H 0.098 0.902 43 H 0.027 0.973 44 H 0.007 0.993 45 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.403 12.483 22.710 28.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.053 4.053 3 C -0.196 4.196 4 C 0.001 3.999 5 O -0.068 6.068 6 C 0.025 3.975 7 C -0.044 4.044 8 C -0.114 4.114 9 C -0.137 4.137 10 C -0.111 4.111 11 C -0.139 4.139 12 C -0.104 4.104 13 N -0.184 5.184 14 C -0.207 4.207 15 C 0.368 3.632 16 O -0.454 6.454 17 N -0.320 5.320 18 C -0.057 4.057 19 C 0.140 3.860 20 C -0.587 4.587 21 H 0.068 0.932 22 C -0.188 4.188 23 N -0.565 5.565 24 Si 0.793 3.207 25 H -0.187 1.187 26 H -0.199 1.199 27 H -0.201 1.201 28 H 0.110 0.890 29 H 0.092 0.908 30 H 0.065 0.935 31 H 0.125 0.875 32 H 0.093 0.907 33 H 0.062 0.938 34 H 0.110 0.890 35 H 0.155 0.845 36 H 0.177 0.823 37 H 0.178 0.822 38 H 0.172 0.828 39 H 0.147 0.853 40 H 0.076 0.924 41 H 0.084 0.916 42 H 0.116 0.884 43 H 0.045 0.955 44 H 0.025 0.975 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -11.156 11.970 22.195 27.575 hybrid contribution 0.626 0.205 -1.199 1.369 sum -10.530 12.175 20.995 26.456 Atomic orbital electron populations 1.21808 0.90925 1.02327 1.04273 1.20427 0.98507 0.97128 0.89267 1.21831 1.00707 0.92729 1.04329 1.24104 0.96492 0.94947 0.84366 1.84306 1.58942 1.48031 1.15505 1.24500 0.92996 0.86035 0.93943 1.17479 1.04521 1.00458 0.81957 1.21427 0.97365 0.96702 0.95874 1.21450 0.99683 0.99997 0.92559 1.21816 0.94281 0.93004 1.02020 1.21441 0.99812 1.00025 0.92670 1.21328 0.96953 0.96939 0.95168 1.71096 1.21217 1.25536 1.00585 1.21424 1.07252 1.00214 0.91786 1.17160 0.79240 0.80342 0.86455 1.90653 1.61426 1.68016 1.25260 1.47991 1.43256 1.31222 1.09510 1.22104 1.00043 1.01889 0.81645 1.18891 0.92729 0.91517 0.82854 1.21600 1.07249 1.15052 1.14765 0.93216 1.25850 1.01820 0.95500 0.95594 1.70039 1.40838 1.24957 1.20627 0.85444 0.78662 0.78345 0.78227 1.18711 1.19856 1.20092 0.88993 0.90772 0.93491 0.87541 0.90694 0.93830 0.88953 0.84543 0.82283 0.82214 0.82797 0.85306 0.92360 0.91600 0.88365 0.95538 0.97457 0.92157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.06 9.18 71.98 0.66 -2.40 16 2 C -0.03 -1.02 3.23 -11.54 -0.04 -1.06 16 3 C -0.14 -3.23 9.18 71.98 0.66 -2.57 16 4 C 0.06 1.96 5.94 25.22 0.15 2.11 16 5 O -0.18 -5.31 10.45 -3.86 -0.04 -5.35 16 6 C 0.23 6.86 7.88 87.38 0.69 7.55 16 7 C -0.04 -0.97 5.87 -20.10 -0.12 -1.09 16 8 C -0.09 -1.58 9.71 22.52 0.22 -1.36 16 9 C -0.12 -1.33 10.03 22.23 0.22 -1.10 16 10 C -0.09 -0.93 10.04 22.32 0.22 -0.70 16 11 C -0.12 -1.62 10.03 22.23 0.22 -1.40 16 12 C -0.08 -1.69 9.68 22.52 0.22 -1.47 16 13 N -0.45 -16.04 7.44 -294.24 -2.19 -18.23 16 14 C -0.09 -3.48 6.67 40.50 0.27 -3.21 16 15 C 0.58 28.40 7.67 86.68 0.66 29.06 16 16 O -0.57 -31.03 14.03 -4.06 -0.06 -31.08 16 17 N -0.59 -29.30 2.86 -855.02 -2.44 -31.74 16 18 C 0.09 3.40 9.58 127.77 1.22 4.63 16 19 C 0.26 15.06 5.15 85.63 0.44 15.50 16 20 C -0.55 -33.18 9.39 25.60 0.24 -32.94 16 21 H 0.05 3.01 7.81 -2.91 -0.02 2.99 16 22 C 0.01 0.70 5.46 84.65 0.46 1.16 16 23 N -0.93 -57.00 13.29 21.45 0.28 -56.72 16 24 Si 0.97 45.94 29.54 68.60 2.03 47.97 16 25 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 26 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 27 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 28 H 0.09 1.65 8.14 -2.39 -0.02 1.64 16 29 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.11 3.93 5.52 -2.38 -0.01 3.91 16 32 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.14 2.02 7.89 -2.91 -0.02 2.00 16 36 H 0.16 0.80 8.06 -2.91 -0.02 0.78 16 37 H 0.16 0.56 8.06 -2.91 -0.02 0.54 16 38 H 0.15 1.30 8.06 -2.91 -0.02 1.28 16 39 H 0.13 2.79 7.82 -2.91 -0.02 2.77 16 40 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 41 H 0.07 2.58 8.03 -2.39 -0.02 2.56 16 42 H 0.10 3.71 5.33 -2.39 -0.01 3.70 16 43 H 0.03 1.55 8.07 -2.38 -0.02 1.53 16 44 H 0.01 0.47 7.39 -2.39 -0.02 0.46 16 45 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 Total: -1.00 -76.69 380.95 4.99 -71.70 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: 0.99 Total: 12.74 kcal Atomic # 6 Polarization: 4.29 SS G_CDS: 6.41 Total: 10.70 kcal Atomic # 7 Polarization: -102.34 SS G_CDS: -4.35 Total: -106.69 kcal Atomic # 8 Polarization: -36.33 SS G_CDS: -0.10 Total: -36.43 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 2.03 Total: 47.97 kcal Total: -76.69 4.99 -71.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115926065.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.672 kcal (2) G-P(sol) polarization free energy of solvation -76.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds