Wall clock time and date at job start Tue Mar 31 2020 16:24:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50695 * 119.99833 * 2 1 4 4 C 1.50704 * 119.99795 * 180.02562 * 2 1 3 5 5 N 1.46499 * 109.47096 * 95.64917 * 4 2 1 6 6 C 1.46501 * 119.99584 * 88.00247 * 5 4 2 7 7 C 1.50701 * 109.47317 * 90.00009 * 6 5 4 8 8 C 1.34515 * 125.78948 * 89.99656 * 7 6 5 9 9 C 1.41380 * 106.84012 * 180.02562 * 8 7 6 10 10 C 1.34519 * 106.84313 * 0.22303 * 9 8 7 11 11 C 1.50699 * 125.79227 * 179.77720 * 10 9 8 12 12 O 1.42904 * 109.47143 * 90.00107 * 11 10 9 13 13 O 1.34297 * 125.78939 * 270.02456 * 7 6 5 14 14 C 1.38825 * 120.00275 * 267.99875 * 5 4 2 15 15 C 1.39792 * 119.58367 * 177.57172 * 14 5 4 16 16 C 1.38593 * 119.48869 * 179.79390 * 15 14 5 17 17 C 1.38388 * 118.68021 * 0.47573 * 16 15 14 18 18 C 1.40555 * 119.14846 * 359.74960 * 17 16 15 19 19 C 1.41320 * 119.78074 * 179.97438 * 18 17 16 20 20 H 1.07995 * 120.00171 * 358.69926 * 19 18 17 21 21 C 1.40020 * 119.99611 * 178.69638 * 19 18 17 22 22 N 1.30747 * 120.00403 * 2.64683 * 21 19 18 23 23 Si 1.86805 * 119.99834 * 182.64764 * 21 19 18 24 24 H 1.48503 * 109.47258 * 90.00080 * 23 21 19 25 25 H 1.48504 * 109.47109 * 210.00011 * 23 21 19 26 26 H 1.48499 * 109.47182 * 329.99682 * 23 21 19 27 27 N 1.31952 * 119.58058 * 357.84682 * 14 5 4 28 28 H 1.08002 * 120.00063 * 354.69722 * 1 2 3 29 29 H 1.08000 * 119.99856 * 174.71409 * 1 2 3 30 30 H 1.09004 * 109.47030 * 240.00077 * 3 2 1 31 31 H 1.08999 * 109.47184 * 0.02562 * 3 2 1 32 32 H 1.08997 * 109.47246 * 120.00560 * 3 2 1 33 33 H 1.09001 * 109.47085 * 335.64789 * 4 2 1 34 34 H 1.08994 * 109.47048 * 215.65261 * 4 2 1 35 35 H 1.08998 * 109.47542 * 329.99694 * 6 5 4 36 36 H 1.09004 * 109.46942 * 209.99569 * 6 5 4 37 37 H 1.07998 * 126.58120 * 0.05482 * 8 7 6 38 38 H 1.08005 * 126.58407 * 179.97438 * 9 8 7 39 39 H 1.09001 * 109.46942 * 210.00024 * 11 10 9 40 40 H 1.08999 * 109.46863 * 329.99859 * 11 10 9 41 41 H 0.96700 * 113.99933 * 180.02562 * 12 11 10 42 42 H 1.08007 * 120.25870 * 359.97438 * 15 14 5 43 43 H 1.08005 * 120.65926 * 180.22365 * 16 15 14 44 44 H 1.08001 * 120.42306 * 179.77456 * 17 16 15 45 45 H 0.96997 * 119.99989 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3052 -0.0006 5 7 2.4254 -1.6595 -1.3752 6 6 3.6796 -1.1689 -1.9520 7 6 4.7813 -2.1590 -1.6745 8 6 5.1284 -3.1915 -2.4638 9 6 6.2015 -3.8533 -1.8241 10 6 6.4428 -3.1887 -0.6798 11 6 7.5009 -3.5368 0.3353 12 8 8.7145 -2.8554 0.0112 13 8 5.5828 -2.1605 -0.5969 14 6 1.5800 -2.4601 -2.1312 15 6 1.9089 -2.7509 -3.4584 16 6 1.0657 -3.5539 -4.2101 17 6 -0.0894 -4.0382 -3.6215 18 6 -0.3673 -3.7064 -2.2842 19 6 -1.5433 -4.1932 -1.6701 20 1 -2.2354 -4.8006 -2.2343 21 6 -1.8109 -3.8881 -0.3300 22 7 -0.9996 -3.1105 0.3382 23 14 -3.3273 -4.5923 0.5033 24 1 -2.9888 -5.8970 1.1266 25 1 -3.7988 -3.6509 1.5506 26 1 -4.3999 -4.7887 -0.5048 27 7 0.4734 -2.9325 -1.5896 28 1 -0.5400 0.9313 0.0864 29 1 -0.5400 -0.9313 -0.0862 30 1 2.6901 1.3628 -0.8900 31 1 1.3552 2.1335 0.0005 32 1 2.6902 1.3628 0.8899 33 1 1.4343 -2.0881 0.4228 34 1 2.9683 -1.2026 0.5984 35 1 3.9337 -0.2078 -1.5051 36 1 3.5617 -1.0490 -3.0290 37 1 4.6747 -3.4625 -3.4056 38 1 6.7244 -4.7275 -2.1832 39 1 7.1669 -3.2322 1.3272 40 1 7.6743 -4.6129 0.3248 41 1 9.4412 -3.0336 0.6237 42 1 2.8147 -2.3552 -3.8939 43 1 1.3032 -3.7935 -5.2361 44 1 -0.7683 -4.6633 -4.1824 45 1 -1.1849 -2.8994 1.2666 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001117312198.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:24:43 Heat of formation + Delta-G solvation = 37.107219 kcal Electronic energy + Delta-G solvation = -28287.196174 eV Core-core repulsion = 24465.544971 eV Total energy + Delta-G solvation = -3821.651203 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.32799 -38.59537 -37.03046 -36.38931 -34.26515 -33.22135 -32.72715 -31.19761 -30.20134 -29.20917 -27.79246 -26.53603 -25.87806 -24.60898 -23.54094 -21.63188 -21.13102 -20.38362 -19.70463 -17.87446 -17.79067 -17.44896 -16.65652 -16.01787 -15.66060 -15.00230 -14.85660 -14.81797 -14.63910 -14.34127 -13.85536 -13.39786 -13.29987 -13.15896 -12.99276 -12.69368 -12.55989 -12.53082 -12.20080 -11.95484 -11.84264 -11.37918 -11.26726 -11.11376 -11.02179 -10.71967 -10.62445 -10.40026 -10.38310 -10.33010 -9.94527 -9.61635 -9.40935 -8.79986 -8.40428 -8.17532 -7.91282 -7.47034 -6.46933 -6.36630 -4.48540 1.80308 2.73319 2.83960 3.00476 3.03960 3.10735 3.13436 3.23882 3.30196 3.96755 4.18380 4.30522 4.77834 4.82896 4.96598 5.08775 5.17105 5.30562 5.49827 5.55391 5.63442 5.74937 5.95809 5.98575 6.01969 6.02792 6.12783 6.17550 6.24805 6.30633 6.33523 6.54364 6.67078 6.78532 6.81774 6.87663 6.91207 7.09968 7.19117 7.32434 7.42351 7.55577 7.59144 7.77313 7.82094 7.93046 7.98712 8.34736 8.50896 8.78771 9.08532 10.20794 10.36683 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.012170 B = 0.003891 C = 0.003639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2300.219294 B = 7195.229583 C = 7691.785703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.163 4.163 3 C -0.112 4.112 4 C 0.169 3.831 5 N -0.603 5.603 6 C 0.211 3.789 7 C -0.009 4.009 8 C -0.197 4.197 9 C -0.182 4.182 10 C -0.036 4.036 11 C 0.162 3.838 12 O -0.568 6.568 13 O -0.169 6.169 14 C 0.414 3.586 15 C -0.363 4.363 16 C -0.031 4.031 17 C -0.315 4.315 18 C 0.293 3.707 19 C -0.432 4.432 20 H 0.081 0.919 21 C 0.076 3.924 22 N -0.718 5.718 23 Si 0.903 3.097 24 H -0.271 1.271 25 H -0.277 1.277 26 H -0.263 1.263 27 N -0.521 5.521 28 H 0.072 0.928 29 H 0.146 0.854 30 H 0.056 0.944 31 H 0.051 0.949 32 H 0.053 0.947 33 H 0.114 0.886 34 H 0.048 0.952 35 H 0.082 0.918 36 H 0.106 0.894 37 H 0.150 0.850 38 H 0.144 0.856 39 H 0.063 0.937 40 H 0.077 0.923 41 H 0.383 0.617 42 H 0.091 0.909 43 H 0.092 0.908 44 H 0.093 0.907 45 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.806 2.712 2.430 12.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.165 4.165 3 C -0.168 4.168 4 C 0.047 3.953 5 N -0.319 5.319 6 C 0.085 3.915 7 C -0.061 4.061 8 C -0.217 4.217 9 C -0.201 4.201 10 C -0.086 4.086 11 C 0.085 3.915 12 O -0.374 6.374 13 O -0.065 6.065 14 C 0.176 3.824 15 C -0.388 4.388 16 C -0.056 4.056 17 C -0.338 4.338 18 C 0.166 3.834 19 C -0.464 4.464 20 H 0.099 0.901 21 C -0.148 4.148 22 N -0.340 5.340 23 Si 0.728 3.272 24 H -0.196 1.196 25 H -0.202 1.202 26 H -0.188 1.188 27 N -0.241 5.241 28 H 0.090 0.910 29 H 0.163 0.837 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.132 0.868 34 H 0.067 0.933 35 H 0.100 0.900 36 H 0.124 0.876 37 H 0.168 0.832 38 H 0.162 0.838 39 H 0.081 0.919 40 H 0.095 0.905 41 H 0.231 0.769 42 H 0.109 0.891 43 H 0.110 0.890 44 H 0.112 0.888 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 11.293 3.496 3.308 12.276 hybrid contribution -0.046 -0.902 -0.282 0.946 sum 11.246 2.594 3.026 11.932 Atomic orbital electron populations 1.24455 0.95918 1.03185 0.97154 1.22005 0.95886 0.95268 1.03331 1.20842 0.99782 0.95401 1.00819 1.20313 0.97642 0.94867 0.82522 1.46128 1.18001 1.54380 1.13367 1.19703 0.79245 0.92296 1.00216 1.23584 0.95067 1.01436 0.86059 1.21663 0.99756 0.97263 1.03036 1.21580 1.00479 1.02841 0.95205 1.21778 0.96009 0.91457 0.99397 1.20220 0.81503 0.95647 0.94138 1.86579 1.21792 1.72548 1.56502 1.83944 1.38191 1.43286 1.41074 1.18443 0.89219 0.87920 0.86797 1.20617 1.05419 1.16938 0.95868 1.20572 0.93683 0.94514 0.96784 1.21539 1.01106 1.12775 0.98331 1.18198 0.90826 0.86854 0.87536 1.19556 1.03925 1.27400 0.95543 0.90065 1.25974 0.97148 0.94003 0.97678 1.69993 1.31980 1.23381 1.08671 0.86404 0.81967 0.79459 0.79385 1.19629 1.20231 1.18756 1.68178 1.03305 1.17246 1.35373 0.90960 0.83671 0.92560 0.93036 0.92810 0.86768 0.93348 0.90021 0.87615 0.83204 0.83818 0.91923 0.90506 0.76940 0.89101 0.89007 0.88847 0.91913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.33 13.89 29.01 0.40 -2.93 16 2 C -0.16 -2.98 5.64 -101.07 -0.57 -3.55 16 3 C -0.11 -1.65 10.08 36.00 0.36 -1.28 16 4 C 0.17 3.33 5.63 -5.19 -0.03 3.30 16 5 N -0.60 -12.11 2.55 -176.55 -0.45 -12.56 16 6 C 0.21 3.53 5.73 -5.19 -0.03 3.50 16 7 C -0.01 -0.15 6.90 -35.62 -0.25 -0.40 16 8 C -0.20 -3.33 10.67 -39.70 -0.42 -3.76 16 9 C -0.18 -2.80 10.81 -39.70 -0.43 -3.23 16 10 C -0.04 -0.55 6.95 -35.62 -0.25 -0.80 16 11 C 0.16 1.76 7.57 36.00 0.27 2.03 16 12 O -0.57 -6.03 13.64 -35.23 -0.48 -6.51 16 13 O -0.17 -2.93 10.65 5.71 0.06 -2.87 16 14 C 0.41 9.71 7.38 -155.33 -1.15 8.57 16 15 C -0.36 -8.03 9.16 -38.87 -0.36 -8.39 16 16 C -0.03 -0.70 10.15 -39.40 -0.40 -1.10 16 17 C -0.31 -7.75 9.83 -38.65 -0.38 -8.13 16 18 C 0.29 7.80 6.55 -85.00 -0.56 7.25 16 19 C -0.43 -11.23 9.13 -37.74 -0.34 -11.58 16 20 H 0.08 2.02 7.85 -52.49 -0.41 1.60 16 21 C 0.08 1.85 5.49 -17.35 -0.10 1.75 16 22 N -0.72 -17.55 9.01 55.55 0.50 -17.05 16 23 Si 0.90 18.17 29.56 -169.99 -5.02 13.15 16 24 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 25 H -0.28 -5.47 7.11 56.52 0.40 -5.07 16 26 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 27 N -0.52 -13.48 6.33 -10.33 -0.07 -13.54 16 28 H 0.07 1.27 7.84 -52.49 -0.41 0.86 16 29 H 0.15 3.32 5.70 -52.49 -0.30 3.02 16 30 H 0.06 0.79 7.01 -51.93 -0.36 0.43 16 31 H 0.05 0.71 7.79 -51.93 -0.40 0.30 16 32 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.11 2.61 6.66 -51.93 -0.35 2.27 16 34 H 0.05 0.88 8.09 -51.93 -0.42 0.46 16 35 H 0.08 1.21 6.90 -51.93 -0.36 0.85 16 36 H 0.11 1.67 6.05 -51.93 -0.31 1.36 16 37 H 0.15 2.47 7.32 -52.49 -0.38 2.08 16 38 H 0.14 1.85 8.06 -52.48 -0.42 1.43 16 39 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.38 1.83 9.12 45.56 0.42 2.25 16 42 H 0.09 1.78 5.28 -52.48 -0.28 1.50 16 43 H 0.09 1.78 8.06 -52.48 -0.42 1.36 16 44 H 0.09 2.16 8.06 -52.49 -0.42 1.74 16 45 H 0.27 6.08 8.29 -40.82 -0.34 5.74 16 LS Contribution 377.14 15.07 5.68 5.68 Total: -1.00 -30.27 377.14 -9.24 -39.51 By element: Atomic # 1 Polarization: 18.18 SS G_CDS: -5.25 Total: 12.93 kcal Atomic # 6 Polarization: -14.53 SS G_CDS: -4.22 Total: -18.74 kcal Atomic # 7 Polarization: -43.13 SS G_CDS: -0.01 Total: -43.15 kcal Atomic # 8 Polarization: -8.96 SS G_CDS: -0.42 Total: -9.38 kcal Atomic # 14 Polarization: 18.17 SS G_CDS: -5.02 Total: 13.15 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -30.27 -9.24 -39.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117312198.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.618 kcal (2) G-P(sol) polarization free energy of solvation -30.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.510 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds