Wall clock time and date at job start Tue Mar 31 2020 16:24:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50695 * 119.99833 * 2 1 4 4 C 1.50704 * 119.99795 * 180.02562 * 2 1 3 5 5 N 1.46499 * 109.47096 * 95.64917 * 4 2 1 6 6 C 1.46501 * 119.99584 * 88.00247 * 5 4 2 7 7 C 1.50701 * 109.47317 * 90.00009 * 6 5 4 8 8 C 1.34515 * 125.78948 * 89.99656 * 7 6 5 9 9 C 1.41380 * 106.84012 * 180.02562 * 8 7 6 10 10 C 1.34519 * 106.84313 * 0.22303 * 9 8 7 11 11 C 1.50699 * 125.79227 * 179.77720 * 10 9 8 12 12 O 1.42904 * 109.47143 * 90.00107 * 11 10 9 13 13 O 1.34297 * 125.78939 * 270.02456 * 7 6 5 14 14 C 1.38825 * 120.00275 * 267.99875 * 5 4 2 15 15 C 1.39792 * 119.58367 * 177.57172 * 14 5 4 16 16 C 1.38593 * 119.48869 * 179.79390 * 15 14 5 17 17 C 1.38388 * 118.68021 * 0.47573 * 16 15 14 18 18 C 1.40555 * 119.14846 * 359.74960 * 17 16 15 19 19 C 1.41320 * 119.78074 * 179.97438 * 18 17 16 20 20 H 1.07995 * 120.00171 * 358.69926 * 19 18 17 21 21 C 1.40020 * 119.99611 * 178.69638 * 19 18 17 22 22 N 1.30747 * 120.00403 * 2.64683 * 21 19 18 23 23 Si 1.86805 * 119.99834 * 182.64764 * 21 19 18 24 24 H 1.48503 * 109.47258 * 90.00080 * 23 21 19 25 25 H 1.48504 * 109.47109 * 210.00011 * 23 21 19 26 26 H 1.48499 * 109.47182 * 329.99682 * 23 21 19 27 27 N 1.31952 * 119.58058 * 357.84682 * 14 5 4 28 28 H 1.08002 * 120.00063 * 354.69722 * 1 2 3 29 29 H 1.08000 * 119.99856 * 174.71409 * 1 2 3 30 30 H 1.09004 * 109.47030 * 240.00077 * 3 2 1 31 31 H 1.08999 * 109.47184 * 0.02562 * 3 2 1 32 32 H 1.08997 * 109.47246 * 120.00560 * 3 2 1 33 33 H 1.09001 * 109.47085 * 335.64789 * 4 2 1 34 34 H 1.08994 * 109.47048 * 215.65261 * 4 2 1 35 35 H 1.08998 * 109.47542 * 329.99694 * 6 5 4 36 36 H 1.09004 * 109.46942 * 209.99569 * 6 5 4 37 37 H 1.07998 * 126.58120 * 0.05482 * 8 7 6 38 38 H 1.08005 * 126.58407 * 179.97438 * 9 8 7 39 39 H 1.09001 * 109.46942 * 210.00024 * 11 10 9 40 40 H 1.08999 * 109.46863 * 329.99859 * 11 10 9 41 41 H 0.96700 * 113.99933 * 180.02562 * 12 11 10 42 42 H 1.08007 * 120.25870 * 359.97438 * 15 14 5 43 43 H 1.08005 * 120.65926 * 180.22365 * 16 15 14 44 44 H 1.08001 * 120.42306 * 179.77456 * 17 16 15 45 45 H 0.96997 * 119.99989 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3052 -0.0006 5 7 2.4254 -1.6595 -1.3752 6 6 3.6796 -1.1689 -1.9520 7 6 4.7813 -2.1590 -1.6745 8 6 5.1284 -3.1915 -2.4638 9 6 6.2015 -3.8533 -1.8241 10 6 6.4428 -3.1887 -0.6798 11 6 7.5009 -3.5368 0.3353 12 8 8.7145 -2.8554 0.0112 13 8 5.5828 -2.1605 -0.5969 14 6 1.5800 -2.4601 -2.1312 15 6 1.9089 -2.7509 -3.4584 16 6 1.0657 -3.5539 -4.2101 17 6 -0.0894 -4.0382 -3.6215 18 6 -0.3673 -3.7064 -2.2842 19 6 -1.5433 -4.1932 -1.6701 20 1 -2.2354 -4.8006 -2.2343 21 6 -1.8109 -3.8881 -0.3300 22 7 -0.9996 -3.1105 0.3382 23 14 -3.3273 -4.5923 0.5033 24 1 -2.9888 -5.8970 1.1266 25 1 -3.7988 -3.6509 1.5506 26 1 -4.3999 -4.7887 -0.5048 27 7 0.4734 -2.9325 -1.5896 28 1 -0.5400 0.9313 0.0864 29 1 -0.5400 -0.9313 -0.0862 30 1 2.6901 1.3628 -0.8900 31 1 1.3552 2.1335 0.0005 32 1 2.6902 1.3628 0.8899 33 1 1.4343 -2.0881 0.4228 34 1 2.9683 -1.2026 0.5984 35 1 3.9337 -0.2078 -1.5051 36 1 3.5617 -1.0490 -3.0290 37 1 4.6747 -3.4625 -3.4056 38 1 6.7244 -4.7275 -2.1832 39 1 7.1669 -3.2322 1.3272 40 1 7.6743 -4.6129 0.3248 41 1 9.4412 -3.0336 0.6237 42 1 2.8147 -2.3552 -3.8939 43 1 1.3032 -3.7935 -5.2361 44 1 -0.7683 -4.6633 -4.1824 45 1 -1.1849 -2.8994 1.2666 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001117312198.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:24:42 Heat of formation + Delta-G solvation = 20.419043 kcal Electronic energy + Delta-G solvation = -28287.919827 eV Core-core repulsion = 24465.544971 eV Total energy + Delta-G solvation = -3822.374857 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.55557 -40.32169 -38.07642 -37.74875 -35.83889 -34.90590 -33.97205 -32.67520 -31.85025 -30.84776 -29.07209 -27.82179 -27.60673 -26.11884 -24.89830 -23.17025 -22.65684 -21.93450 -21.06090 -19.46885 -19.11534 -18.59329 -17.99680 -17.53347 -17.04925 -16.54041 -16.37950 -16.16461 -16.00399 -15.56968 -15.29990 -14.99885 -14.83611 -14.65549 -14.23021 -13.98495 -13.87704 -13.83748 -13.78000 -13.50415 -12.95960 -12.86198 -12.70887 -12.63362 -12.57566 -12.41206 -12.26838 -12.04336 -11.88395 -11.70290 -11.16832 -11.11789 -10.85708 -10.52132 -9.86696 -9.76955 -9.42696 -9.28424 -8.18421 -8.17047 -6.40002 0.58501 1.09249 1.38035 1.40272 1.44002 1.54716 1.58466 1.65761 1.91976 2.27395 2.65509 2.96922 3.43565 3.79564 3.97048 4.06340 4.07166 4.09445 4.15616 4.24064 4.34606 4.39519 4.45723 4.47945 4.60067 4.77000 4.78680 4.86665 4.88762 4.95277 5.03124 5.04942 5.09163 5.12648 5.16942 5.32688 5.35640 5.45253 5.56365 5.76584 6.00444 6.03668 6.12444 6.14805 6.22357 6.32349 6.59846 6.70865 6.85682 6.94086 7.23605 8.38193 8.54723 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.012170 B = 0.003891 C = 0.003639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2300.219294 B = 7195.229583 C = 7691.785703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.151 4.151 3 C -0.106 4.106 4 C 0.171 3.829 5 N -0.601 5.601 6 C 0.211 3.789 7 C -0.028 4.028 8 C -0.208 4.208 9 C -0.197 4.197 10 C -0.042 4.042 11 C 0.163 3.837 12 O -0.586 6.586 13 O -0.183 6.183 14 C 0.398 3.602 15 C -0.360 4.360 16 C -0.030 4.030 17 C -0.345 4.345 18 C 0.261 3.739 19 C -0.469 4.469 20 H 0.079 0.921 21 C 0.036 3.964 22 N -0.733 5.733 23 Si 0.976 3.024 24 H -0.269 1.269 25 H -0.269 1.269 26 H -0.262 1.262 27 N -0.540 5.540 28 H 0.090 0.910 29 H 0.112 0.888 30 H 0.066 0.934 31 H 0.062 0.938 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.063 0.937 35 H 0.104 0.896 36 H 0.115 0.885 37 H 0.150 0.850 38 H 0.166 0.834 39 H 0.074 0.926 40 H 0.105 0.895 41 H 0.408 0.592 42 H 0.118 0.882 43 H 0.124 0.876 44 H 0.096 0.904 45 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.663 3.419 2.962 14.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.152 4.152 3 C -0.163 4.163 4 C 0.048 3.952 5 N -0.316 5.316 6 C 0.087 3.913 7 C -0.080 4.080 8 C -0.228 4.228 9 C -0.216 4.216 10 C -0.092 4.092 11 C 0.086 3.914 12 O -0.397 6.397 13 O -0.080 6.080 14 C 0.159 3.841 15 C -0.385 4.385 16 C -0.055 4.055 17 C -0.368 4.368 18 C 0.134 3.866 19 C -0.500 4.500 20 H 0.097 0.903 21 C -0.187 4.187 22 N -0.355 5.355 23 Si 0.797 3.203 24 H -0.194 1.194 25 H -0.193 1.193 26 H -0.186 1.186 27 N -0.261 5.261 28 H 0.109 0.891 29 H 0.130 0.870 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.091 0.909 33 H 0.096 0.904 34 H 0.082 0.918 35 H 0.122 0.878 36 H 0.133 0.867 37 H 0.168 0.832 38 H 0.184 0.816 39 H 0.092 0.908 40 H 0.123 0.877 41 H 0.260 0.740 42 H 0.136 0.864 43 H 0.142 0.858 44 H 0.114 0.886 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 13.205 4.220 3.843 14.385 hybrid contribution -0.426 -1.117 -0.451 1.278 sum 12.779 3.103 3.392 13.581 Atomic orbital electron populations 1.24347 0.96680 1.02606 0.99588 1.22170 0.95546 0.96259 1.01235 1.20836 0.99978 0.93304 1.02168 1.20206 0.97747 0.94641 0.82604 1.46238 1.18574 1.53646 1.13147 1.19884 0.77605 0.93045 1.00763 1.23553 0.95771 1.02045 0.86618 1.21859 1.00300 0.97448 1.03184 1.21911 1.00455 1.03768 0.95446 1.22718 0.96063 0.90262 1.00148 1.20392 0.80695 0.97141 0.93135 1.86499 1.22469 1.72861 1.57902 1.83930 1.38695 1.44239 1.41150 1.18853 0.89207 0.88164 0.87846 1.20931 1.06048 1.16146 0.95413 1.20940 0.92682 0.93591 0.98246 1.21672 1.02610 1.14291 0.98180 1.18620 0.91622 0.87671 0.88704 1.19814 1.04532 1.28789 0.96912 0.90302 1.26706 1.00047 0.94242 0.97673 1.70106 1.33132 1.23370 1.08895 0.85312 0.78140 0.78627 0.78189 1.19424 1.19306 1.18647 1.68168 1.04216 1.17741 1.36009 0.89127 0.86962 0.91497 0.91849 0.90925 0.90430 0.91823 0.87785 0.86748 0.83241 0.81623 0.90777 0.87716 0.74010 0.86385 0.85767 0.88605 0.91522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -7.73 13.89 67.78 0.94 -6.78 16 2 C -0.15 -5.39 5.64 -16.49 -0.09 -5.49 16 3 C -0.11 -2.84 10.08 71.23 0.72 -2.12 16 4 C 0.17 6.73 5.63 85.63 0.48 7.21 16 5 N -0.60 -23.90 2.55 -712.48 -1.82 -25.71 16 6 C 0.21 6.73 5.73 85.63 0.49 7.22 16 7 C -0.03 -0.93 6.90 24.83 0.17 -0.75 16 8 C -0.21 -6.80 10.67 22.19 0.24 -6.56 16 9 C -0.20 -5.75 10.81 22.19 0.24 -5.51 16 10 C -0.04 -1.21 6.95 24.83 0.17 -1.03 16 11 C 0.16 3.10 7.57 71.24 0.54 3.64 16 12 O -0.59 -10.81 13.64 -148.98 -2.03 -12.84 16 13 O -0.18 -6.10 10.65 -2.47 -0.03 -6.12 16 14 C 0.40 18.88 7.38 133.42 0.99 19.86 16 15 C -0.36 -15.74 9.16 22.73 0.21 -15.53 16 16 C -0.03 -1.36 10.15 22.39 0.23 -1.13 16 17 C -0.34 -17.48 9.83 22.87 0.22 -17.25 16 18 C 0.26 14.50 6.55 40.18 0.26 14.76 16 19 C -0.47 -25.50 9.13 23.46 0.21 -25.29 16 20 H 0.08 4.12 7.85 -2.91 -0.02 4.10 16 21 C 0.04 1.80 5.49 85.29 0.47 2.26 16 22 N -0.73 -37.29 9.01 21.84 0.20 -37.09 16 23 Si 0.98 38.30 29.56 68.60 2.03 40.33 16 24 H -0.27 -10.40 7.11 99.48 0.71 -9.69 16 25 H -0.27 -10.04 7.11 99.48 0.71 -9.34 16 26 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 27 N -0.54 -28.96 6.33 -186.59 -1.18 -30.14 16 28 H 0.09 3.17 7.84 -2.91 -0.02 3.14 16 29 H 0.11 5.35 5.70 -2.91 -0.02 5.33 16 30 H 0.07 1.67 7.01 -2.39 -0.02 1.66 16 31 H 0.06 1.56 7.79 -2.39 -0.02 1.54 16 32 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.08 3.68 6.66 -2.39 -0.02 3.66 16 34 H 0.06 2.27 8.09 -2.39 -0.02 2.25 16 35 H 0.10 2.82 6.90 -2.39 -0.02 2.80 16 36 H 0.11 3.40 6.05 -2.39 -0.01 3.38 16 37 H 0.15 4.77 7.32 -2.91 -0.02 4.75 16 38 H 0.17 3.92 8.06 -2.91 -0.02 3.89 16 39 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.41 2.64 9.12 -74.06 -0.68 1.97 16 42 H 0.12 4.41 5.28 -2.91 -0.02 4.40 16 43 H 0.12 4.62 8.06 -2.91 -0.02 4.59 16 44 H 0.10 4.62 8.06 -2.91 -0.02 4.60 16 45 H 0.27 12.82 8.29 -92.71 -0.77 12.05 16 Total: -1.00 -68.17 377.14 4.01 -64.17 By element: Atomic # 1 Polarization: 39.56 SS G_CDS: 0.35 Total: 39.91 kcal Atomic # 6 Polarization: -38.98 SS G_CDS: 6.49 Total: -32.49 kcal Atomic # 7 Polarization: -90.15 SS G_CDS: -2.80 Total: -92.95 kcal Atomic # 8 Polarization: -16.91 SS G_CDS: -2.06 Total: -18.97 kcal Atomic # 14 Polarization: 38.30 SS G_CDS: 2.03 Total: 40.33 kcal Total: -68.17 4.01 -64.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117312198.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.586 kcal (2) G-P(sol) polarization free energy of solvation -68.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.167 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds