Wall clock time and date at job start Tue Mar 31 2020 15:57:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47193 * 179.97438 * 2 1 4 4 C 1.52996 * 109.47372 * 252.14530 * 3 2 1 5 5 C 1.53002 * 109.47346 * 180.02562 * 4 3 2 6 6 N 1.46496 * 109.47037 * 180.02562 * 5 4 3 7 7 C 1.34777 * 119.99875 * 180.02562 * 6 5 4 8 8 O 1.21346 * 119.99870 * 0.26710 * 7 6 5 9 9 C 1.49456 * 119.99882 * 179.97438 * 7 6 5 10 10 O 1.21346 * 119.99809 * 359.97438 * 9 7 6 11 11 N 1.34777 * 119.99878 * 179.97438 * 9 7 6 12 12 C 1.46496 * 120.00258 * 179.97438 * 11 9 7 13 13 H 1.09002 * 109.46776 * 35.00022 * 12 11 9 14 14 C 1.52998 * 109.47246 * 155.00083 * 12 11 9 15 15 C 1.50697 * 109.47439 * 295.00322 * 14 12 11 16 16 H 1.08007 * 119.99628 * 359.97438 * 15 14 12 17 17 C 1.37875 * 120.00471 * 180.02562 * 15 14 12 18 18 N 1.31519 * 119.99612 * 359.97438 * 17 15 14 19 19 Si 1.86794 * 120.00481 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47274 * 89.99797 * 19 17 15 21 21 H 1.48496 * 109.47331 * 209.99853 * 19 17 15 22 22 H 1.48501 * 109.46858 * 329.99902 * 19 17 15 23 23 C 1.50696 * 109.47365 * 275.00798 * 12 11 9 24 24 C 1.38236 * 119.99802 * 319.72135 * 23 12 11 25 25 C 1.38242 * 120.00141 * 179.79215 * 24 23 12 26 26 C 1.38232 * 119.99627 * 0.44159 * 25 24 23 27 27 C 1.38232 * 119.99889 * 359.81024 * 26 25 24 28 28 C 1.38225 * 120.00662 * 359.97438 * 27 26 25 29 29 H 4.44647 * 5.63419 * 180.02562 * 4 1 2 30 30 H 1.09004 * 109.46869 * 132.14549 * 3 2 1 31 31 H 1.09000 * 109.47344 * 12.14511 * 3 2 1 32 32 H 1.08996 * 109.47261 * 59.99882 * 4 3 2 33 33 H 1.09000 * 109.46870 * 300.00271 * 4 3 2 34 34 H 1.08992 * 109.46974 * 59.99681 * 5 4 3 35 35 H 1.08996 * 109.46550 * 299.99576 * 5 4 3 36 36 H 0.96999 * 120.00082 * 359.97438 * 6 5 4 37 37 H 0.96999 * 120.00047 * 0.02562 * 11 9 7 38 38 H 1.08998 * 109.47261 * 55.00563 * 14 12 11 39 39 H 1.09000 * 109.47285 * 175.00317 * 14 12 11 40 40 H 0.96995 * 119.99952 * 180.02562 * 18 17 15 41 41 H 1.08001 * 120.00085 * 359.97438 * 24 23 12 42 42 H 1.07997 * 119.99779 * 180.27319 * 25 24 23 43 43 H 1.07996 * 119.99638 * 179.83667 * 26 25 24 44 44 H 1.08007 * 119.99514 * 180.02562 * 27 26 25 45 45 H 1.08001 * 120.00946 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 6 3.1558 0.4431 1.3730 5 6 4.6858 0.4444 1.3728 6 7 5.1739 0.8675 2.6876 7 6 6.4990 0.9445 2.9217 8 8 7.2876 0.6680 2.0419 9 6 6.9970 1.3767 4.2630 10 8 6.2083 1.6588 5.1410 11 7 8.3220 1.4532 4.4972 12 6 8.8102 1.8774 5.8117 13 1 8.1380 1.5071 6.5857 14 6 10.2132 1.3120 6.0415 15 6 10.1441 -0.1919 6.1081 16 1 9.1943 -0.6942 5.9981 17 6 11.2931 -0.9266 6.3107 18 7 12.4495 -0.3149 6.4452 19 14 11.2075 -2.7908 6.3926 20 1 11.3840 -3.3548 5.0302 21 1 12.2840 -3.2972 7.2813 22 1 9.8863 -3.2024 6.9313 23 6 8.8597 3.3825 5.8675 24 6 9.2971 4.1008 4.7704 25 6 9.3385 5.4817 4.8200 26 6 8.9511 6.1438 5.9699 27 6 8.5187 5.4253 7.0688 28 6 8.4731 4.0447 7.0177 29 1 -1.0501 -0.0002 0.0000 30 1 3.0089 0.6904 -0.7620 31 1 3.0098 -1.0038 -0.2162 32 1 2.7928 -0.2465 2.1349 33 1 2.7920 1.4476 1.5892 34 1 5.0484 1.1343 0.6109 35 1 5.0499 -0.5599 1.1564 36 1 4.5435 1.0930 3.3895 37 1 8.9524 1.2281 3.7953 38 1 10.8641 1.6097 5.2194 39 1 10.6119 1.6993 6.9791 40 1 13.2579 -0.8317 6.5874 41 1 9.6037 3.5833 3.8734 42 1 9.6760 6.0430 3.9613 43 1 8.9860 7.2225 6.0096 44 1 8.2157 5.9427 7.9671 45 1 8.1356 3.4833 7.8764 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001117607865.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:57:11 Heat of formation + Delta-G solvation = -9.298485 kcal Electronic energy + Delta-G solvation = -26636.718018 eV Core-core repulsion = 22813.054512 eV Total energy + Delta-G solvation = -3823.663506 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 2.27 seconds Orbital eigenvalues (eV) -40.42007 -39.13962 -38.03029 -36.58780 -35.43206 -34.29959 -32.74696 -31.56154 -31.16276 -30.49256 -28.87686 -27.33189 -25.31613 -23.73180 -22.34642 -22.11756 -21.95214 -20.35365 -19.77699 -18.45484 -18.19999 -16.86789 -16.58912 -16.25283 -16.16515 -15.55965 -15.33234 -15.12467 -14.78152 -14.54240 -14.28086 -13.88004 -13.86555 -13.38658 -13.20161 -13.13458 -13.00393 -12.66611 -12.53576 -12.12922 -11.89367 -11.63814 -11.56046 -11.37741 -11.15354 -10.96873 -10.74499 -10.62902 -10.61032 -10.47511 -10.44581 -9.82559 -9.39450 -9.28423 -9.24976 -8.65133 -8.54449 -8.45814 -8.23869 -6.09363 -4.13193 1.69985 1.74568 1.76889 2.38680 2.50797 2.69560 3.28964 3.35654 3.39171 3.54334 3.88857 4.01467 4.20635 4.40374 4.59415 4.65249 4.80048 4.88460 5.17133 5.21221 5.22771 5.24308 5.27754 5.33343 5.41263 5.49705 5.66875 5.71672 5.76724 5.86523 5.89262 6.07461 6.18415 6.29737 6.37910 6.50179 6.69027 6.80849 6.81981 7.02054 7.13842 7.27878 7.36114 7.46087 7.53060 7.77178 7.86269 8.04445 8.22806 8.42927 8.91761 9.52158 11.01098 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.008296 B = 0.003254 C = 0.002483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3374.233653 B = 8602.762483 C =11272.063001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.186 4.186 3 C -0.009 4.009 4 C -0.128 4.128 5 C 0.117 3.883 6 N -0.708 5.708 7 C 0.509 3.491 8 O -0.517 6.517 9 C 0.503 3.497 10 O -0.533 6.533 11 N -0.664 5.664 12 C 0.182 3.818 13 H 0.092 0.908 14 C 0.023 3.977 15 C -0.523 4.523 16 H 0.058 0.942 17 C 0.061 3.939 18 N -0.891 5.891 19 Si 0.893 3.107 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.274 1.274 23 C -0.075 4.075 24 C -0.108 4.108 25 C -0.124 4.124 26 C -0.133 4.133 27 C -0.123 4.123 28 C -0.106 4.106 29 H 0.217 0.783 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.412 0.588 37 H 0.414 0.586 38 H 0.027 0.973 39 H 0.038 0.962 40 H 0.262 0.738 41 H 0.118 0.882 42 H 0.116 0.884 43 H 0.114 0.886 44 H 0.117 0.883 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.461 6.827 -9.044 19.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.187 4.187 3 C -0.047 4.047 4 C -0.166 4.166 5 C -0.006 4.006 6 N -0.362 5.362 7 C 0.290 3.710 8 O -0.392 6.392 9 C 0.282 3.718 10 O -0.411 6.411 11 N -0.315 5.315 12 C 0.079 3.921 13 H 0.110 0.890 14 C -0.014 4.014 15 C -0.561 4.561 16 H 0.076 0.924 17 C -0.141 4.141 18 N -0.529 5.529 19 Si 0.720 3.280 20 H -0.206 1.206 21 H -0.212 1.212 22 H -0.199 1.199 23 C -0.077 4.077 24 C -0.126 4.126 25 C -0.142 4.142 26 C -0.151 4.151 27 C -0.141 4.141 28 C -0.125 4.125 29 H 0.233 0.767 30 H 0.110 0.890 31 H 0.110 0.890 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.249 0.751 37 H 0.250 0.750 38 H 0.045 0.955 39 H 0.057 0.943 40 H 0.072 0.928 41 H 0.136 0.864 42 H 0.134 0.866 43 H 0.132 0.868 44 H 0.135 0.865 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -16.210 6.777 -9.019 19.749 hybrid contribution -0.122 -1.053 0.037 1.061 sum -16.332 5.724 -8.982 19.498 Atomic orbital electron populations 1.24934 0.96016 1.01184 1.00514 1.23055 0.94506 1.00409 1.00685 1.18607 0.84842 1.03402 0.97802 1.21749 0.94176 1.03258 0.97411 1.21424 0.93228 1.01308 0.84659 1.45706 1.06937 1.68102 1.15478 1.20432 0.83041 0.78529 0.89046 1.90761 1.55189 1.47319 1.45930 1.19925 0.84256 0.79773 0.87814 1.90713 1.55307 1.49390 1.45682 1.45854 1.05592 1.63839 1.16172 1.20425 1.00410 0.87775 0.83497 0.89016 1.19422 0.87415 0.95991 0.98594 1.21106 0.93810 0.90968 1.50216 0.92418 1.24977 0.95424 0.98642 0.95020 1.69955 0.98372 1.35608 1.48984 0.86579 0.77773 0.85591 0.78024 1.20566 1.21202 1.19853 1.20483 0.96720 0.96537 0.93914 1.20966 0.99300 0.93826 0.98516 1.21056 1.00721 0.94466 0.97980 1.21016 1.00951 0.99286 0.93853 1.21043 1.00606 0.94142 0.98314 1.21007 0.99428 0.94197 0.97831 0.76665 0.89049 0.89002 0.90482 0.90548 0.90763 0.90692 0.75142 0.74961 0.95459 0.94343 0.92818 0.86396 0.86617 0.86760 0.86513 0.86042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.58 19.25 29.55 0.57 -1.01 16 2 C -0.19 -1.55 13.34 -37.13 -0.50 -2.04 16 3 C -0.01 -0.06 5.70 -29.52 -0.17 -0.23 16 4 C -0.13 -0.88 5.28 -26.73 -0.14 -1.03 16 5 C 0.12 1.06 5.67 -4.04 -0.02 1.04 16 6 N -0.71 -8.40 5.55 -60.73 -0.34 -8.74 16 7 C 0.51 7.99 7.89 -11.58 -0.09 7.90 16 8 O -0.52 -9.16 16.48 5.50 0.09 -9.07 16 9 C 0.50 8.96 7.85 -11.58 -0.09 8.87 16 10 O -0.53 -10.21 16.14 5.50 0.09 -10.12 16 11 N -0.66 -12.47 4.03 -55.37 -0.22 -12.69 16 12 C 0.18 3.67 2.11 -69.09 -0.15 3.52 16 13 H 0.09 1.95 7.44 -51.93 -0.39 1.57 16 14 C 0.02 0.55 4.49 -27.89 -0.13 0.42 16 15 C -0.52 -13.88 8.84 -34.44 -0.30 -14.19 16 16 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 17 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 18 N -0.89 -25.60 13.29 55.43 0.74 -24.87 16 19 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 21 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 23 C -0.08 -1.38 4.91 -104.62 -0.51 -1.89 16 24 C -0.11 -1.82 9.32 -39.58 -0.37 -2.19 16 25 C -0.12 -1.83 10.05 -39.58 -0.40 -2.23 16 26 C -0.13 -1.84 10.05 -39.59 -0.40 -2.24 16 27 C -0.12 -1.79 10.05 -39.59 -0.40 -2.19 16 28 C -0.11 -1.78 9.67 -39.59 -0.38 -2.16 16 29 H 0.22 0.94 7.80 -54.09 -0.42 0.51 16 30 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.41 4.44 7.94 -40.82 -0.32 4.11 16 37 H 0.41 7.74 8.07 -40.82 -0.33 7.41 16 38 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 41 H 0.12 1.93 7.73 -52.49 -0.41 1.52 16 42 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 43 H 0.11 1.26 8.06 -52.49 -0.42 0.84 16 44 H 0.12 1.38 8.06 -52.48 -0.42 0.96 16 45 H 0.12 1.92 8.04 -52.49 -0.42 1.50 16 LS Contribution 398.67 15.07 6.01 6.01 Total: -1.00 -32.13 398.67 -8.71 -40.84 By element: Atomic # 1 Polarization: 16.93 SS G_CDS: -6.48 Total: 10.45 kcal Atomic # 6 Polarization: -4.46 SS G_CDS: -3.57 Total: -8.04 kcal Atomic # 7 Polarization: -46.48 SS G_CDS: 0.18 Total: -46.30 kcal Atomic # 8 Polarization: -19.36 SS G_CDS: 0.18 Total: -19.19 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -32.13 -8.71 -40.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117607865.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.540 kcal (2) G-P(sol) polarization free energy of solvation -32.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.27 seconds