Wall clock time and date at job start Tue Mar 31 2020 15:57:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47193 * 179.97438 * 2 1 4 4 C 1.52996 * 109.47372 * 252.14530 * 3 2 1 5 5 C 1.53002 * 109.47346 * 180.02562 * 4 3 2 6 6 N 1.46496 * 109.47037 * 180.02562 * 5 4 3 7 7 C 1.34777 * 119.99875 * 180.02562 * 6 5 4 8 8 O 1.21346 * 119.99870 * 0.26710 * 7 6 5 9 9 C 1.49456 * 119.99882 * 179.97438 * 7 6 5 10 10 O 1.21346 * 119.99809 * 359.97438 * 9 7 6 11 11 N 1.34777 * 119.99878 * 179.97438 * 9 7 6 12 12 C 1.46496 * 120.00258 * 179.97438 * 11 9 7 13 13 H 1.09002 * 109.46776 * 35.00022 * 12 11 9 14 14 C 1.52998 * 109.47246 * 155.00083 * 12 11 9 15 15 C 1.50697 * 109.47439 * 295.00322 * 14 12 11 16 16 H 1.08007 * 119.99628 * 359.97438 * 15 14 12 17 17 C 1.37875 * 120.00471 * 180.02562 * 15 14 12 18 18 N 1.31519 * 119.99612 * 359.97438 * 17 15 14 19 19 Si 1.86794 * 120.00481 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47274 * 89.99797 * 19 17 15 21 21 H 1.48496 * 109.47331 * 209.99853 * 19 17 15 22 22 H 1.48501 * 109.46858 * 329.99902 * 19 17 15 23 23 C 1.50696 * 109.47365 * 275.00798 * 12 11 9 24 24 C 1.38236 * 119.99802 * 319.72135 * 23 12 11 25 25 C 1.38242 * 120.00141 * 179.79215 * 24 23 12 26 26 C 1.38232 * 119.99627 * 0.44159 * 25 24 23 27 27 C 1.38232 * 119.99889 * 359.81024 * 26 25 24 28 28 C 1.38225 * 120.00662 * 359.97438 * 27 26 25 29 29 H 4.44647 * 5.63419 * 180.02562 * 4 1 2 30 30 H 1.09004 * 109.46869 * 132.14549 * 3 2 1 31 31 H 1.09000 * 109.47344 * 12.14511 * 3 2 1 32 32 H 1.08996 * 109.47261 * 59.99882 * 4 3 2 33 33 H 1.09000 * 109.46870 * 300.00271 * 4 3 2 34 34 H 1.08992 * 109.46974 * 59.99681 * 5 4 3 35 35 H 1.08996 * 109.46550 * 299.99576 * 5 4 3 36 36 H 0.96999 * 120.00082 * 359.97438 * 6 5 4 37 37 H 0.96999 * 120.00047 * 0.02562 * 11 9 7 38 38 H 1.08998 * 109.47261 * 55.00563 * 14 12 11 39 39 H 1.09000 * 109.47285 * 175.00317 * 14 12 11 40 40 H 0.96995 * 119.99952 * 180.02562 * 18 17 15 41 41 H 1.08001 * 120.00085 * 359.97438 * 24 23 12 42 42 H 1.07997 * 119.99779 * 180.27319 * 25 24 23 43 43 H 1.07996 * 119.99638 * 179.83667 * 26 25 24 44 44 H 1.08007 * 119.99514 * 180.02562 * 27 26 25 45 45 H 1.08001 * 120.00946 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 6 3.1558 0.4431 1.3730 5 6 4.6858 0.4444 1.3728 6 7 5.1739 0.8675 2.6876 7 6 6.4990 0.9445 2.9217 8 8 7.2876 0.6680 2.0419 9 6 6.9970 1.3767 4.2630 10 8 6.2083 1.6588 5.1410 11 7 8.3220 1.4532 4.4972 12 6 8.8102 1.8774 5.8117 13 1 8.1380 1.5071 6.5857 14 6 10.2132 1.3120 6.0415 15 6 10.1441 -0.1919 6.1081 16 1 9.1943 -0.6942 5.9981 17 6 11.2931 -0.9266 6.3107 18 7 12.4495 -0.3149 6.4452 19 14 11.2075 -2.7908 6.3926 20 1 11.3840 -3.3548 5.0302 21 1 12.2840 -3.2972 7.2813 22 1 9.8863 -3.2024 6.9313 23 6 8.8597 3.3825 5.8675 24 6 9.2971 4.1008 4.7704 25 6 9.3385 5.4817 4.8200 26 6 8.9511 6.1438 5.9699 27 6 8.5187 5.4253 7.0688 28 6 8.4731 4.0447 7.0177 29 1 -1.0501 -0.0002 0.0000 30 1 3.0089 0.6904 -0.7620 31 1 3.0098 -1.0038 -0.2162 32 1 2.7928 -0.2465 2.1349 33 1 2.7920 1.4476 1.5892 34 1 5.0484 1.1343 0.6109 35 1 5.0499 -0.5599 1.1564 36 1 4.5435 1.0930 3.3895 37 1 8.9524 1.2281 3.7953 38 1 10.8641 1.6097 5.2194 39 1 10.6119 1.6993 6.9791 40 1 13.2579 -0.8317 6.5874 41 1 9.6037 3.5833 3.8734 42 1 9.6760 6.0430 3.9613 43 1 8.9860 7.2225 6.0096 44 1 8.2157 5.9427 7.9671 45 1 8.1356 3.4833 7.8764 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001117607865.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:57:09 Heat of formation + Delta-G solvation = -28.645360 kcal Electronic energy + Delta-G solvation = -26637.556961 eV Core-core repulsion = 22813.054512 eV Total energy + Delta-G solvation = -3824.502449 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 6.53 seconds Orbital eigenvalues (eV) -41.77080 -40.40815 -39.34107 -37.45634 -36.90592 -35.21351 -34.69467 -32.60018 -32.27391 -31.70390 -30.58317 -28.24375 -26.92566 -25.03214 -23.82009 -23.34884 -22.86217 -21.68702 -21.19010 -19.53097 -18.99484 -18.62116 -17.96649 -17.62164 -17.16950 -16.77908 -16.63800 -16.37419 -16.20515 -15.96918 -15.39219 -15.01634 -14.94087 -14.55352 -14.43479 -14.19781 -14.13219 -13.86824 -13.84067 -13.69903 -13.48346 -12.96718 -12.79321 -12.63067 -12.53194 -12.45528 -12.22229 -12.16884 -11.88828 -11.63575 -11.36810 -11.20062 -10.97562 -10.71767 -10.56475 -10.32147 -10.16476 -9.76500 -9.55049 -8.21420 -6.31607 0.37197 0.48417 0.55297 1.36102 1.39553 1.40133 1.50441 1.90652 1.94188 2.17868 2.39301 2.68828 2.97562 3.13164 3.45330 3.49858 3.93735 4.01206 4.01546 4.05110 4.20534 4.23825 4.32259 4.38319 4.60934 4.61198 4.61474 4.72737 4.76937 4.77761 5.07213 5.10290 5.13967 5.14142 5.19880 5.20207 5.24628 5.39717 5.52144 5.60520 5.63980 5.75521 5.77818 6.00412 6.13751 6.18437 6.41524 6.72775 6.75940 6.80399 6.98841 7.37192 8.89249 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.008296 B = 0.003254 C = 0.002483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3374.233653 B = 8602.762483 C =11272.063001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.216 4.216 3 C -0.009 4.009 4 C -0.116 4.116 5 C 0.115 3.885 6 N -0.689 5.689 7 C 0.512 3.488 8 O -0.541 6.541 9 C 0.501 3.499 10 O -0.548 6.548 11 N -0.668 5.668 12 C 0.198 3.802 13 H 0.074 0.926 14 C 0.036 3.964 15 C -0.532 4.532 16 H 0.054 0.946 17 C 0.010 3.990 18 N -0.924 5.924 19 Si 0.956 3.044 20 H -0.274 1.274 21 H -0.281 1.281 22 H -0.269 1.269 23 C -0.102 4.102 24 C -0.125 4.125 25 C -0.125 4.125 26 C -0.126 4.126 27 C -0.121 4.121 28 C -0.126 4.126 29 H 0.240 0.760 30 H 0.102 0.898 31 H 0.100 0.900 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.419 0.581 37 H 0.412 0.588 38 H 0.010 0.990 39 H 0.013 0.987 40 H 0.264 0.736 41 H 0.113 0.887 42 H 0.144 0.856 43 H 0.152 0.848 44 H 0.148 0.852 45 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.039 7.724 -9.767 21.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.216 4.216 3 C -0.046 4.046 4 C -0.154 4.154 5 C -0.007 4.007 6 N -0.343 5.343 7 C 0.293 3.707 8 O -0.418 6.418 9 C 0.282 3.718 10 O -0.427 6.427 11 N -0.317 5.317 12 C 0.094 3.906 13 H 0.092 0.908 14 C -0.002 4.002 15 C -0.570 4.570 16 H 0.072 0.928 17 C -0.188 4.188 18 N -0.564 5.564 19 Si 0.781 3.219 20 H -0.200 1.200 21 H -0.207 1.207 22 H -0.194 1.194 23 C -0.103 4.103 24 C -0.143 4.143 25 C -0.143 4.143 26 C -0.144 4.144 27 C -0.139 4.139 28 C -0.145 4.145 29 H 0.256 0.744 30 H 0.121 0.879 31 H 0.118 0.882 32 H 0.095 0.905 33 H 0.098 0.902 34 H 0.099 0.901 35 H 0.094 0.906 36 H 0.256 0.744 37 H 0.249 0.751 38 H 0.028 0.972 39 H 0.031 0.969 40 H 0.073 0.927 41 H 0.131 0.869 42 H 0.162 0.838 43 H 0.170 0.830 44 H 0.165 0.835 45 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -17.839 7.675 -9.748 21.729 hybrid contribution 0.290 -1.250 0.262 1.309 sum -17.549 6.425 -9.486 20.958 Atomic orbital electron populations 1.25703 0.97020 1.00544 0.99724 1.23586 0.95451 1.01114 1.01471 1.18649 0.84143 1.04222 0.97576 1.21636 0.92247 1.03544 0.97946 1.21639 0.94663 1.01373 0.83037 1.45731 1.05540 1.66203 1.16798 1.19988 0.84178 0.78913 0.87666 1.90754 1.56003 1.48961 1.46090 1.20331 0.83613 0.79124 0.88762 1.90692 1.55469 1.50013 1.46530 1.45783 1.06238 1.64187 1.15522 1.19949 0.97377 0.89497 0.83760 0.90827 1.19162 0.89580 0.94906 0.96516 1.21397 0.93609 0.92387 1.49596 0.92808 1.25780 0.95127 1.03162 0.94780 1.70064 0.98993 1.37293 1.50049 0.85585 0.77894 0.80221 0.78198 1.19951 1.20676 1.19363 1.20364 0.99268 0.95173 0.95460 1.21070 1.00008 0.95184 0.98033 1.21418 0.99885 0.93533 0.99474 1.21486 0.98864 1.01194 0.92820 1.21416 0.99559 0.93105 0.99846 1.21186 1.00206 0.95699 0.97364 0.74364 0.87936 0.88184 0.90484 0.90190 0.90147 0.90602 0.74354 0.75115 0.97207 0.96873 0.92687 0.86860 0.83836 0.83002 0.83471 0.86188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.89 19.25 74.32 1.43 -1.46 16 2 C -0.22 -3.28 13.34 31.12 0.42 -2.86 16 3 C -0.01 -0.10 5.70 28.79 0.16 0.06 16 4 C -0.12 -1.41 5.28 30.59 0.16 -1.24 16 5 C 0.12 1.92 5.67 86.38 0.49 2.41 16 6 N -0.69 -15.71 5.55 -464.43 -2.58 -18.29 16 7 C 0.51 16.06 7.89 87.27 0.69 16.75 16 8 O -0.54 -19.18 16.48 -3.23 -0.05 -19.23 16 9 C 0.50 18.23 7.85 87.27 0.68 18.92 16 10 O -0.55 -21.31 16.14 -3.23 -0.05 -21.36 16 11 N -0.67 -26.10 4.03 -447.45 -1.81 -27.91 16 12 C 0.20 8.39 2.11 44.24 0.09 8.48 16 13 H 0.07 3.32 7.44 -2.39 -0.02 3.31 16 14 C 0.04 1.80 4.49 29.85 0.13 1.94 16 15 C -0.53 -29.19 8.84 25.60 0.23 -28.96 16 16 H 0.05 2.93 7.74 -2.91 -0.02 2.91 16 17 C 0.01 0.58 5.46 84.65 0.46 1.04 16 18 N -0.92 -54.46 13.29 21.45 0.28 -54.17 16 19 Si 0.96 44.10 29.54 68.60 2.03 46.12 16 20 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 21 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 22 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 23 C -0.10 -3.82 4.91 -19.87 -0.10 -3.91 16 24 C -0.12 -4.24 9.32 22.27 0.21 -4.03 16 25 C -0.13 -3.45 10.05 22.27 0.22 -3.22 16 26 C -0.13 -3.11 10.05 22.27 0.22 -2.88 16 27 C -0.12 -3.28 10.05 22.27 0.22 -3.06 16 28 C -0.13 -4.25 9.67 22.27 0.22 -4.04 16 29 H 0.24 1.59 7.80 -4.41 -0.03 1.56 16 30 H 0.10 0.91 8.14 -2.38 -0.02 0.89 16 31 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.08 1.30 8.14 -2.39 -0.02 1.29 16 35 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.42 8.56 7.94 -92.71 -0.74 7.82 16 37 H 0.41 16.21 8.07 -92.71 -0.75 15.46 16 38 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 39 H 0.01 0.72 8.14 -2.39 -0.02 0.70 16 40 H 0.26 14.73 8.31 -92.71 -0.77 13.96 16 41 H 0.11 3.83 7.73 -2.91 -0.02 3.81 16 42 H 0.14 3.08 8.06 -2.91 -0.02 3.06 16 43 H 0.15 2.62 8.06 -2.91 -0.02 2.60 16 44 H 0.15 3.01 8.06 -2.91 -0.02 2.99 16 45 H 0.12 3.93 8.04 -2.91 -0.02 3.90 16 Total: -1.00 -70.39 398.67 3.29 -67.10 By element: Atomic # 1 Polarization: 34.29 SS G_CDS: -0.48 Total: 33.81 kcal Atomic # 6 Polarization: -12.02 SS G_CDS: 5.95 Total: -6.07 kcal Atomic # 7 Polarization: -96.27 SS G_CDS: -4.10 Total: -100.37 kcal Atomic # 8 Polarization: -40.49 SS G_CDS: -0.11 Total: -40.59 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.12 kcal Total: -70.39 3.29 -67.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117607865.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.454 kcal (2) G-P(sol) polarization free energy of solvation -70.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.53 seconds