Wall clock time and date at job start Tue Mar 31 2020 16:29:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.46872 * 2 1 4 4 C 1.50690 * 109.47179 * 240.00091 * 2 1 3 5 5 H 1.07999 * 119.99971 * 239.99953 * 4 2 1 6 6 C 1.37875 * 120.00308 * 59.99693 * 4 2 1 7 7 N 1.31512 * 119.99755 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00150 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47153 * 60.00391 * 8 6 4 10 10 H 1.48500 * 109.47283 * 179.97438 * 8 6 4 11 11 H 1.48505 * 109.47169 * 300.00179 * 8 6 4 12 12 C 1.52998 * 109.47028 * 119.99809 * 2 1 3 13 13 N 1.46507 * 109.47369 * 300.00176 * 12 2 1 14 14 C 1.34765 * 120.00241 * 179.97438 * 13 12 2 15 15 O 1.21351 * 120.00182 * 0.02562 * 14 13 12 16 16 C 1.49455 * 120.00433 * 179.97438 * 14 13 12 17 17 O 1.21351 * 119.99385 * 0.02562 * 16 14 13 18 18 N 1.34773 * 120.00147 * 180.02562 * 16 14 13 19 19 C 1.46499 * 119.99494 * 180.02562 * 18 16 14 20 20 C 1.47203 * 109.46809 * 179.97438 * 19 18 16 21 21 C 9.52153 * 93.42087 * 94.84986 * 2 1 3 22 22 C 9.43621 * 124.54816 * 148.68904 * 12 1 2 23 23 C 1.39535 * 120.13986 * 131.51491 * 22 21 20 24 24 C 1.37972 * 119.85845 * 179.97438 * 23 22 21 25 25 C 1.38346 * 120.13996 * 359.97438 * 24 23 22 26 26 C 1.38346 * 120.28578 * 0.02562 * 25 24 23 27 27 C 1.37972 * 120.14050 * 359.97438 * 26 25 24 28 28 H 1.09001 * 109.47305 * 299.99968 * 1 2 3 29 29 H 1.09003 * 109.47242 * 60.00134 * 1 2 3 30 30 H 1.09004 * 109.47232 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47217 * 179.97438 * 3 2 1 32 32 H 1.09003 * 109.47077 * 299.99967 * 3 2 1 33 33 H 1.09001 * 109.47130 * 59.99924 * 3 2 1 34 34 H 0.97004 * 120.00089 * 180.02562 * 7 6 4 35 35 H 1.08996 * 109.46918 * 180.02562 * 12 2 1 36 36 H 1.09001 * 109.47187 * 59.99673 * 12 2 1 37 37 H 0.97003 * 119.99249 * 0.02562 * 13 12 2 38 38 H 0.96996 * 120.00047 * 359.97438 * 18 16 14 39 39 H 1.08999 * 109.47687 * 60.00101 * 19 18 16 40 40 H 1.08996 * 109.47444 * 299.99592 * 19 18 16 41 41 H 1.08007 * 120.07409 * 359.69681 * 23 22 21 42 42 H 1.08000 * 119.92892 * 180.02562 * 24 23 22 43 43 H 1.08003 * 119.85471 * 179.97438 * 25 24 23 44 44 H 1.08001 * 119.92423 * 180.02562 * 26 25 24 45 45 H 1.08003 * 120.06529 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2304 5 1 2.6532 -1.5884 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9435 0.8302 -2.6033 8 14 2.3214 -1.1204 -4.0079 9 1 1.8258 -2.5202 -4.0077 10 1 1.8259 -0.4207 -5.2204 11 1 3.8064 -1.1209 -4.0081 12 6 2.0400 -0.7212 1.2493 13 7 1.5516 -0.0306 2.4455 14 6 1.8767 -0.4913 3.6695 15 8 2.5744 -1.4779 3.7809 16 6 1.3790 0.2135 4.8898 17 8 0.6817 1.2004 4.7784 18 7 1.7046 -0.2469 6.1139 19 6 1.2162 0.4437 7.3100 20 6 1.7064 -0.2505 8.5119 21 6 2.0982 -0.8036 9.4705 22 6 2.5756 -1.4786 10.6398 23 6 3.8881 -1.9494 10.6901 24 6 4.3422 -2.5985 11.8198 25 6 3.4993 -2.7825 12.9013 26 6 2.1968 -2.3182 12.8577 27 6 1.7306 -1.6675 11.7339 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 3.1299 1.4426 0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 0.7088 1.1613 -3.4844 35 1 3.1300 -0.7208 1.2495 36 1 1.6766 -1.7489 1.2493 37 1 0.9936 0.7579 2.3564 38 1 2.2617 -1.0360 6.2029 39 1 0.1262 0.4437 7.3100 40 1 1.5796 1.4713 7.3101 41 1 4.5460 -1.8099 9.8449 42 1 5.3580 -2.9630 11.8601 43 1 3.8594 -3.2917 13.7831 44 1 1.5440 -2.4646 13.7054 45 1 0.7134 -1.3058 11.7010 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118052728.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:29:30 Heat of formation + Delta-G solvation = -1.683306 kcal Electronic energy + Delta-G solvation = -25480.646678 eV Core-core repulsion = 21657.313391 eV Total energy + Delta-G solvation = -3823.333287 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.46010 -39.57929 -38.46083 -36.51803 -35.88883 -33.93645 -33.25825 -31.43317 -30.98890 -30.90216 -27.85653 -26.02418 -25.72775 -25.21227 -23.50412 -22.98308 -22.77612 -20.35031 -19.24184 -18.80166 -18.16858 -16.77728 -16.61548 -16.02900 -15.98306 -15.60110 -15.46089 -15.05116 -14.75809 -14.75145 -14.43461 -13.92189 -13.79914 -13.71448 -13.49607 -13.38349 -12.93865 -12.68482 -12.23059 -11.92108 -11.80132 -11.58724 -11.40577 -11.36717 -11.18375 -10.86772 -10.74554 -10.70992 -10.40357 -10.20657 -9.65893 -9.59418 -9.48993 -9.45124 -9.26787 -8.89301 -8.81627 -8.62425 -8.37411 -6.02861 -4.13767 0.43005 0.91213 1.58849 1.87840 2.38636 2.81752 3.29588 3.34318 3.37344 3.41877 3.51675 3.53984 3.96274 4.38756 4.47794 4.48120 4.61612 4.74483 4.83350 4.96800 5.06136 5.15614 5.19263 5.23700 5.51894 5.53614 5.92037 5.95385 6.00955 6.01079 6.09906 6.22407 6.44451 6.45986 6.60862 6.80562 6.84415 6.92605 6.99694 6.99833 7.04974 7.32395 7.54486 7.61255 7.68711 7.91136 7.99561 8.11402 8.30094 8.39557 8.86098 9.52084 10.98480 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.029795 B = 0.001652 C = 0.001593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.517868 B =16948.092890 C =17576.526260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.055 3.945 3 C -0.133 4.133 4 C -0.508 4.508 5 H 0.058 0.942 6 C 0.067 3.933 7 N -0.884 5.884 8 Si 0.895 3.105 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.128 3.872 13 N -0.679 5.679 14 C 0.497 3.503 15 O -0.534 6.534 16 C 0.511 3.489 17 O -0.517 6.517 18 N -0.706 5.706 19 C 0.235 3.765 20 C -0.170 4.170 21 C -0.112 4.112 22 C 0.011 3.989 23 C -0.093 4.093 24 C -0.119 4.119 25 C -0.111 4.111 26 C -0.120 4.120 27 C -0.095 4.095 28 H 0.008 0.992 29 H 0.087 0.913 30 H 0.027 0.973 31 H 0.027 0.973 32 H 0.087 0.913 33 H 0.008 0.992 34 H 0.261 0.739 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.411 0.589 38 H 0.416 0.584 39 H 0.100 0.900 40 H 0.101 0.899 41 H 0.129 0.871 42 H 0.129 0.871 43 H 0.126 0.874 44 H 0.128 0.872 45 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.151 -3.002 28.205 28.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.054 3.946 3 C -0.191 4.191 4 C -0.547 4.547 5 H 0.076 0.924 6 C -0.135 4.135 7 N -0.522 5.522 8 Si 0.723 3.277 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.203 1.203 12 C 0.006 3.994 13 N -0.331 5.331 14 C 0.276 3.724 15 O -0.412 6.412 16 C 0.292 3.708 17 O -0.392 6.392 18 N -0.361 5.361 19 C 0.113 3.887 20 C -0.170 4.170 21 C -0.113 4.113 22 C 0.011 3.989 23 C -0.111 4.111 24 C -0.137 4.137 25 C -0.129 4.129 26 C -0.138 4.138 27 C -0.113 4.113 28 H 0.027 0.973 29 H 0.106 0.894 30 H 0.047 0.953 31 H 0.047 0.953 32 H 0.106 0.894 33 H 0.027 0.973 34 H 0.071 0.929 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.249 0.751 38 H 0.253 0.747 39 H 0.118 0.882 40 H 0.118 0.882 41 H 0.147 0.853 42 H 0.147 0.853 43 H 0.144 0.856 44 H 0.146 0.854 45 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 2.045 -2.849 27.995 28.214 hybrid contribution 0.319 -0.470 -0.762 0.950 sum 2.364 -3.319 27.233 27.536 Atomic orbital electron populations 1.21854 0.97545 0.99292 1.00394 1.18392 0.93023 0.92904 0.90256 1.21853 0.98616 0.98213 1.00396 1.20900 1.31782 1.12205 0.89768 0.92406 1.24878 0.94818 0.94906 0.98855 1.69796 1.36411 1.22613 1.23409 0.86615 0.79202 0.79759 0.82150 1.20291 1.21320 1.20283 1.21962 0.98583 0.96058 0.82780 1.46224 1.50356 1.31390 1.05093 1.19853 0.82486 0.85233 0.84811 1.90736 1.37872 1.25911 1.86695 1.20508 0.80886 0.84653 0.84709 1.90771 1.36386 1.25270 1.86750 1.45740 1.53546 1.32605 1.04230 1.18142 0.99508 0.94599 0.76409 1.21941 0.99587 0.99489 0.96012 1.19162 1.00232 0.98052 0.93870 1.15910 0.93893 0.99076 0.90014 1.21288 0.94259 0.96984 0.98577 1.21134 1.00224 0.99091 0.93250 1.21329 0.93910 0.99006 0.98612 1.21116 0.96145 0.98511 0.98046 1.21253 0.99497 0.98127 0.92387 0.97260 0.89442 0.95341 0.95345 0.89432 0.97268 0.92877 0.91941 0.91940 0.75130 0.74717 0.88187 0.88157 0.85317 0.85319 0.85629 0.85398 0.85455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.02 8.08 37.16 0.30 -2.72 16 2 C 0.05 1.27 0.50 -155.66 -0.08 1.19 16 3 C -0.13 -3.02 8.08 37.16 0.30 -2.72 16 4 C -0.51 -13.10 8.01 -34.45 -0.28 -13.38 16 5 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 6 C 0.07 1.75 5.15 -17.82 -0.09 1.66 16 7 N -0.88 -23.44 9.35 55.43 0.52 -22.93 16 8 Si 0.89 20.53 29.54 -169.99 -5.02 15.51 16 9 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 10 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 12 C 0.13 2.65 4.50 -4.04 -0.02 2.64 16 13 N -0.68 -12.45 4.95 -60.73 -0.30 -12.75 16 14 C 0.50 8.60 7.89 -11.59 -0.09 8.51 16 15 O -0.53 -10.17 16.48 5.50 0.09 -10.08 16 16 C 0.51 7.61 7.89 -11.58 -0.09 7.52 16 17 O -0.52 -8.52 16.48 5.50 0.09 -8.43 16 18 N -0.71 -8.33 5.53 -63.60 -0.35 -8.68 16 19 C 0.24 2.25 6.15 -6.83 -0.04 2.21 16 20 C -0.17 -1.67 13.46 -37.12 -0.50 -2.17 16 21 C -0.11 -1.12 13.24 -38.84 -0.51 -1.63 16 22 C 0.01 0.10 5.72 -107.01 -0.61 -0.51 16 23 C -0.09 -0.73 9.75 -39.20 -0.38 -1.11 16 24 C -0.12 -0.75 10.03 -39.64 -0.40 -1.14 16 25 C -0.11 -0.63 10.04 -39.50 -0.40 -1.02 16 26 C -0.12 -0.72 10.03 -39.64 -0.40 -1.12 16 27 C -0.09 -0.70 9.75 -39.20 -0.38 -1.09 16 28 H 0.01 0.17 6.86 -51.93 -0.36 -0.18 16 29 H 0.09 2.19 6.07 -51.93 -0.32 1.87 16 30 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.09 2.19 6.07 -51.93 -0.32 1.88 16 33 H 0.01 0.17 6.86 -51.93 -0.36 -0.18 16 34 H 0.26 6.71 8.31 -40.82 -0.34 6.37 16 35 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 36 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 37 H 0.41 7.38 5.63 -40.82 -0.23 7.15 16 38 H 0.42 4.69 7.92 -40.82 -0.32 4.37 16 39 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.13 0.90 8.06 -52.48 -0.42 0.47 16 42 H 0.13 0.54 8.06 -52.49 -0.42 0.12 16 43 H 0.13 0.43 8.06 -52.48 -0.42 0.01 16 44 H 0.13 0.48 8.06 -52.49 -0.42 0.05 16 45 H 0.13 0.79 8.06 -52.48 -0.42 0.36 16 LS Contribution 386.54 15.07 5.83 5.83 Total: -1.00 -29.11 386.54 -8.91 -38.02 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: -6.09 Total: 8.42 kcal Atomic # 6 Polarization: -1.23 SS G_CDS: -3.67 Total: -4.90 kcal Atomic # 7 Polarization: -44.23 SS G_CDS: -0.13 Total: -44.36 kcal Atomic # 8 Polarization: -18.69 SS G_CDS: 0.18 Total: -18.51 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -29.11 -8.91 -38.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118052728.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.333 kcal (2) G-P(sol) polarization free energy of solvation -29.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds