Wall clock time and date at job start Tue Mar 31 2020 16:29:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.46872 * 2 1 4 4 C 1.50690 * 109.47179 * 240.00091 * 2 1 3 5 5 H 1.07999 * 119.99971 * 239.99953 * 4 2 1 6 6 C 1.37875 * 120.00308 * 59.99693 * 4 2 1 7 7 N 1.31512 * 119.99755 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00150 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47153 * 60.00391 * 8 6 4 10 10 H 1.48500 * 109.47283 * 179.97438 * 8 6 4 11 11 H 1.48505 * 109.47169 * 300.00179 * 8 6 4 12 12 C 1.52998 * 109.47028 * 119.99809 * 2 1 3 13 13 N 1.46507 * 109.47369 * 300.00176 * 12 2 1 14 14 C 1.34765 * 120.00241 * 179.97438 * 13 12 2 15 15 O 1.21351 * 120.00182 * 0.02562 * 14 13 12 16 16 C 1.49455 * 120.00433 * 179.97438 * 14 13 12 17 17 O 1.21351 * 119.99385 * 0.02562 * 16 14 13 18 18 N 1.34773 * 120.00147 * 180.02562 * 16 14 13 19 19 C 1.46499 * 119.99494 * 180.02562 * 18 16 14 20 20 C 1.47203 * 109.46809 * 179.97438 * 19 18 16 21 21 C 9.52153 * 93.42087 * 94.84986 * 2 1 3 22 22 C 9.43621 * 124.54816 * 148.68904 * 12 1 2 23 23 C 1.39535 * 120.13986 * 131.51491 * 22 21 20 24 24 C 1.37972 * 119.85845 * 179.97438 * 23 22 21 25 25 C 1.38346 * 120.13996 * 359.97438 * 24 23 22 26 26 C 1.38346 * 120.28578 * 0.02562 * 25 24 23 27 27 C 1.37972 * 120.14050 * 359.97438 * 26 25 24 28 28 H 1.09001 * 109.47305 * 299.99968 * 1 2 3 29 29 H 1.09003 * 109.47242 * 60.00134 * 1 2 3 30 30 H 1.09004 * 109.47232 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47217 * 179.97438 * 3 2 1 32 32 H 1.09003 * 109.47077 * 299.99967 * 3 2 1 33 33 H 1.09001 * 109.47130 * 59.99924 * 3 2 1 34 34 H 0.97004 * 120.00089 * 180.02562 * 7 6 4 35 35 H 1.08996 * 109.46918 * 180.02562 * 12 2 1 36 36 H 1.09001 * 109.47187 * 59.99673 * 12 2 1 37 37 H 0.97003 * 119.99249 * 0.02562 * 13 12 2 38 38 H 0.96996 * 120.00047 * 359.97438 * 18 16 14 39 39 H 1.08999 * 109.47687 * 60.00101 * 19 18 16 40 40 H 1.08996 * 109.47444 * 299.99592 * 19 18 16 41 41 H 1.08007 * 120.07409 * 359.69681 * 23 22 21 42 42 H 1.08000 * 119.92892 * 180.02562 * 24 23 22 43 43 H 1.08003 * 119.85471 * 179.97438 * 25 24 23 44 44 H 1.08001 * 119.92423 * 180.02562 * 26 25 24 45 45 H 1.08003 * 120.06529 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2304 5 1 2.6532 -1.5884 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9435 0.8302 -2.6033 8 14 2.3214 -1.1204 -4.0079 9 1 1.8258 -2.5202 -4.0077 10 1 1.8259 -0.4207 -5.2204 11 1 3.8064 -1.1209 -4.0081 12 6 2.0400 -0.7212 1.2493 13 7 1.5516 -0.0306 2.4455 14 6 1.8767 -0.4913 3.6695 15 8 2.5744 -1.4779 3.7809 16 6 1.3790 0.2135 4.8898 17 8 0.6817 1.2004 4.7784 18 7 1.7046 -0.2469 6.1139 19 6 1.2162 0.4437 7.3100 20 6 1.7064 -0.2505 8.5119 21 6 2.0982 -0.8036 9.4705 22 6 2.5756 -1.4786 10.6398 23 6 3.8881 -1.9494 10.6901 24 6 4.3422 -2.5985 11.8198 25 6 3.4993 -2.7825 12.9013 26 6 2.1968 -2.3182 12.8577 27 6 1.7306 -1.6675 11.7339 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 3.1299 1.4426 0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 0.7088 1.1613 -3.4844 35 1 3.1300 -0.7208 1.2495 36 1 1.6766 -1.7489 1.2493 37 1 0.9936 0.7579 2.3564 38 1 2.2617 -1.0360 6.2029 39 1 0.1262 0.4437 7.3100 40 1 1.5796 1.4713 7.3101 41 1 4.5460 -1.8099 9.8449 42 1 5.3580 -2.9630 11.8601 43 1 3.8594 -3.2917 13.7831 44 1 1.5440 -2.4646 13.7054 45 1 0.7134 -1.3058 11.7010 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118052728.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:29:29 Heat of formation + Delta-G solvation = -17.892332 kcal Electronic energy + Delta-G solvation = -25481.349554 eV Core-core repulsion = 21657.313391 eV Total energy + Delta-G solvation = -3824.036163 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.75347 -40.08117 -39.81727 -38.20082 -36.88744 -35.13142 -34.50848 -32.74508 -31.91396 -31.66837 -28.83658 -27.58341 -27.57512 -27.04843 -24.55312 -23.66469 -23.46486 -21.58974 -20.73721 -20.17241 -19.01064 -18.07896 -17.73180 -17.24393 -17.20845 -16.76206 -16.55071 -16.24097 -16.07309 -15.87664 -15.35599 -14.95770 -14.87214 -14.75426 -14.41822 -14.37411 -14.26459 -14.03998 -13.99859 -13.20272 -13.12162 -12.86322 -12.67800 -12.61569 -12.37194 -12.30364 -12.26421 -12.11792 -12.06903 -11.49735 -11.45462 -11.29546 -10.78560 -10.66574 -10.44644 -10.39507 -10.13291 -9.94347 -9.48411 -8.00417 -6.16862 -0.14366 0.30178 0.42212 0.96909 1.46625 1.47770 1.53935 1.60423 1.88720 2.10880 2.46683 2.72451 2.85659 2.99536 3.23427 3.43564 4.01242 4.02990 4.13934 4.26534 4.34825 4.39549 4.43415 4.47790 4.51113 4.61542 4.68798 4.92695 4.95539 5.00589 5.05120 5.06546 5.07998 5.18306 5.21484 5.44106 5.47825 5.48761 5.54228 5.65859 5.68396 5.86109 5.98197 6.12498 6.19742 6.30163 6.33133 6.42122 6.65876 6.86144 6.93745 7.50962 8.98554 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.029795 B = 0.001652 C = 0.001593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.517868 B =16948.092890 C =17576.526260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.048 3.952 3 C -0.123 4.123 4 C -0.527 4.527 5 H 0.051 0.949 6 C 0.027 3.973 7 N -0.900 5.900 8 Si 0.948 3.052 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.276 1.276 12 C 0.143 3.857 13 N -0.680 5.680 14 C 0.499 3.501 15 O -0.552 6.552 16 C 0.521 3.479 17 O -0.533 6.533 18 N -0.691 5.691 19 C 0.238 3.762 20 C -0.184 4.184 21 C -0.115 4.115 22 C -0.020 4.020 23 C -0.107 4.107 24 C -0.124 4.124 25 C -0.109 4.109 26 C -0.123 4.123 27 C -0.104 4.104 28 H 0.031 0.969 29 H 0.063 0.937 30 H 0.023 0.977 31 H 0.023 0.977 32 H 0.063 0.937 33 H 0.031 0.969 34 H 0.260 0.740 35 H 0.055 0.945 36 H 0.055 0.945 37 H 0.414 0.586 38 H 0.420 0.580 39 H 0.112 0.888 40 H 0.112 0.888 41 H 0.129 0.871 42 H 0.149 0.851 43 H 0.152 0.848 44 H 0.152 0.848 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.400 -3.522 30.357 30.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.047 3.953 3 C -0.181 4.181 4 C -0.565 4.565 5 H 0.069 0.931 6 C -0.173 4.173 7 N -0.538 5.538 8 Si 0.774 3.226 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.201 1.201 12 C 0.020 3.980 13 N -0.332 5.332 14 C 0.279 3.721 15 O -0.431 6.431 16 C 0.301 3.699 17 O -0.409 6.409 18 N -0.345 5.345 19 C 0.117 3.883 20 C -0.184 4.184 21 C -0.116 4.116 22 C -0.020 4.020 23 C -0.125 4.125 24 C -0.142 4.142 25 C -0.127 4.127 26 C -0.140 4.140 27 C -0.122 4.122 28 H 0.050 0.950 29 H 0.082 0.918 30 H 0.042 0.958 31 H 0.042 0.958 32 H 0.082 0.918 33 H 0.050 0.950 34 H 0.069 0.931 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.252 0.748 38 H 0.257 0.743 39 H 0.130 0.870 40 H 0.130 0.870 41 H 0.147 0.853 42 H 0.167 0.833 43 H 0.170 0.830 44 H 0.170 0.830 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 2.298 -3.375 30.185 30.460 hybrid contribution 0.280 -0.365 -1.280 1.361 sum 2.579 -3.740 28.905 29.260 Atomic orbital electron populations 1.21697 0.97236 0.98889 1.00249 1.18408 0.93261 0.93101 0.90502 1.21695 0.98192 0.97926 1.00250 1.21203 1.31863 1.12305 0.91157 0.93071 1.25482 0.95128 0.95571 1.01097 1.69916 1.36931 1.23325 1.23676 0.85782 0.78628 0.78760 0.79404 1.20164 1.21121 1.20140 1.21560 0.97961 0.95508 0.82940 1.46062 1.50701 1.31473 1.04929 1.20247 0.81736 0.84868 0.85225 1.90727 1.38554 1.26746 1.87053 1.19903 0.81009 0.84344 0.84647 1.90774 1.37388 1.25898 1.86864 1.45716 1.52480 1.32311 1.03983 1.18286 1.00160 0.94717 0.75147 1.21955 0.99946 1.00223 0.96292 1.19622 1.00058 0.97774 0.94156 1.16160 0.94850 1.00543 0.90401 1.21441 0.94050 0.97589 0.99434 1.21436 1.01370 0.98537 0.92846 1.21720 0.93636 0.98126 0.99182 1.21454 0.96775 0.97638 0.98183 1.21454 0.99782 0.98439 0.92564 0.95040 0.91829 0.95804 0.95799 0.91821 0.95050 0.93054 0.92677 0.92690 0.74755 0.74337 0.86995 0.87021 0.85303 0.83331 0.82982 0.83020 0.84807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.54 8.08 71.98 0.58 -4.96 16 2 C 0.05 2.21 0.50 -52.93 -0.03 2.18 16 3 C -0.12 -5.54 8.08 71.98 0.58 -4.96 16 4 C -0.53 -27.30 8.01 25.60 0.21 -27.10 16 5 H 0.05 2.65 7.74 -2.91 -0.02 2.63 16 6 C 0.03 1.41 5.15 84.65 0.44 1.85 16 7 N -0.90 -48.05 9.35 21.45 0.20 -47.85 16 8 Si 0.95 42.15 29.54 68.60 2.03 44.17 16 9 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 10 H -0.29 -12.53 7.11 99.48 0.71 -11.82 16 11 H -0.28 -12.13 7.11 99.48 0.71 -11.43 16 12 C 0.14 5.90 4.50 86.38 0.39 6.29 16 13 N -0.68 -24.32 4.95 -464.41 -2.30 -26.62 16 14 C 0.50 16.79 7.89 87.27 0.69 17.48 16 15 O -0.55 -20.63 16.48 -3.25 -0.05 -20.68 16 16 C 0.52 14.79 7.89 87.27 0.69 15.48 16 17 O -0.53 -16.72 16.48 -3.25 -0.05 -16.77 16 18 N -0.69 -15.39 5.53 -473.49 -2.62 -18.01 16 19 C 0.24 4.21 6.15 84.57 0.52 4.73 16 20 C -0.18 -3.48 13.46 31.13 0.42 -3.06 16 21 C -0.11 -2.27 13.24 30.02 0.40 -1.87 16 22 C -0.02 -0.34 5.72 -21.41 -0.12 -0.46 16 23 C -0.11 -1.62 9.75 22.52 0.22 -1.40 16 24 C -0.12 -1.35 10.03 22.23 0.22 -1.13 16 25 C -0.11 -0.97 10.04 22.32 0.22 -0.75 16 26 C -0.12 -1.22 10.03 22.23 0.22 -0.99 16 27 C -0.10 -1.45 9.75 22.52 0.22 -1.23 16 28 H 0.03 1.23 6.86 -2.39 -0.02 1.22 16 29 H 0.06 3.19 6.07 -2.39 -0.01 3.18 16 30 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.06 3.20 6.07 -2.39 -0.01 3.18 16 33 H 0.03 1.23 6.86 -2.39 -0.02 1.21 16 34 H 0.26 13.44 8.31 -92.71 -0.77 12.67 16 35 H 0.05 2.34 8.14 -2.39 -0.02 2.32 16 36 H 0.05 2.33 8.14 -2.39 -0.02 2.31 16 37 H 0.41 14.34 5.63 -92.71 -0.52 13.82 16 38 H 0.42 9.00 7.92 -92.71 -0.73 8.27 16 39 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 40 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 41 H 0.13 1.79 8.06 -2.91 -0.02 1.77 16 42 H 0.15 0.93 8.06 -2.91 -0.02 0.90 16 43 H 0.15 0.51 8.06 -2.91 -0.02 0.49 16 44 H 0.15 0.71 8.06 -2.91 -0.02 0.68 16 45 H 0.13 1.55 8.06 -2.91 -0.02 1.53 16 Total: -1.00 -61.45 386.54 2.84 -58.61 By element: Atomic # 1 Polarization: 27.28 SS G_CDS: -0.22 Total: 27.05 kcal Atomic # 6 Polarization: -5.77 SS G_CDS: 5.87 Total: 0.10 kcal Atomic # 7 Polarization: -87.76 SS G_CDS: -4.72 Total: -92.47 kcal Atomic # 8 Polarization: -37.35 SS G_CDS: -0.11 Total: -37.46 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 2.03 Total: 44.17 kcal Total: -61.45 2.84 -58.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118052728.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.716 kcal (2) G-P(sol) polarization free energy of solvation -61.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds