Wall clock time and date at job start Tue Mar 31 2020 16:27:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.47105 * 2 1 4 4 C 1.52996 * 109.47199 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.47431 * 180.02562 * 4 3 2 6 6 C 1.36936 * 119.99600 * 264.17670 * 5 4 3 7 7 H 1.08007 * 120.00043 * 139.02378 * 6 5 4 8 8 C 1.38984 * 120.00163 * 319.01917 * 6 5 4 9 9 N 1.31408 * 120.00132 * 344.63514 * 8 6 5 10 10 Si 1.86803 * 120.00287 * 164.63538 * 8 6 5 11 11 H 1.48497 * 109.47239 * 90.00307 * 10 8 6 12 12 H 1.48499 * 109.47164 * 210.00371 * 10 8 6 13 13 H 1.48496 * 109.46857 * 330.00168 * 10 8 6 14 14 C 1.34773 * 120.00549 * 84.16837 * 5 4 3 15 15 O 1.21646 * 119.99410 * 5.02770 * 14 5 4 16 16 C 1.47363 * 120.00396 * 185.01965 * 14 5 4 17 17 N 1.35787 * 126.37316 * 358.35163 * 16 14 5 18 18 C 1.30897 * 108.42661 * 180.02562 * 17 16 14 19 19 C 1.47863 * 125.48266 * 180.02562 * 18 17 16 20 20 C 1.39549 * 120.14108 * 359.72913 * 19 18 17 21 21 C 1.37966 * 119.85526 * 179.76500 * 20 19 18 22 22 C 1.38349 * 120.14016 * 0.48985 * 21 20 19 23 23 C 1.38355 * 120.28977 * 359.78208 * 22 21 20 24 24 C 1.37963 * 120.14382 * 359.95919 * 23 22 21 25 25 O 1.34479 * 109.03810 * 0.02562 * 18 17 16 26 26 C 1.34286 * 108.17884 * 359.97438 * 25 18 17 27 27 C 1.50701 * 126.44890 * 179.73935 * 26 25 18 28 28 H 1.09005 * 109.46708 * 60.00128 * 1 2 3 29 29 H 1.09004 * 109.46870 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46830 * 299.99376 * 1 2 3 31 31 H 1.09002 * 109.47201 * 239.99983 * 2 1 3 32 32 H 1.09004 * 109.47152 * 120.00497 * 2 1 3 33 33 H 1.09003 * 109.46622 * 60.00136 * 3 2 1 34 34 H 1.09004 * 109.47521 * 300.00271 * 3 2 1 35 35 H 1.08993 * 109.47401 * 59.99985 * 4 3 2 36 36 H 1.09009 * 109.47166 * 300.00071 * 4 3 2 37 37 H 0.97000 * 120.00178 * 179.97438 * 9 8 6 38 38 H 1.07997 * 120.07308 * 359.97438 * 20 19 18 39 39 H 1.08001 * 119.92971 * 180.23002 * 21 20 19 40 40 H 1.08003 * 119.85791 * 179.76102 * 22 21 20 41 41 H 1.08001 * 119.92616 * 179.97438 * 23 22 21 42 42 H 1.08002 * 120.07190 * 180.02562 * 24 23 22 43 43 H 1.08995 * 109.47353 * 0.02562 * 27 26 25 44 44 H 1.09007 * 109.47358 * 120.02332 * 27 26 25 45 45 H 1.09003 * 109.46812 * 240.01970 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0584 2.8237 0.0013 6 6 4.4005 3.4294 -1.1782 7 1 4.1302 4.4601 -1.3544 8 6 5.0958 2.7178 -2.1488 9 7 5.6859 1.5858 -1.8370 10 14 5.1915 3.3704 -3.8965 11 1 6.3857 4.2422 -4.0347 12 1 5.2969 2.2325 -4.8447 13 1 3.9679 4.1554 -4.1993 14 6 4.1708 3.4983 1.1626 15 8 3.9546 2.9328 2.2177 16 6 4.5557 4.9207 1.1542 17 7 4.8559 5.6673 0.0605 18 6 5.1485 6.8805 0.4552 19 6 5.5308 8.0022 -0.4292 20 6 5.6085 7.8111 -1.8094 21 6 5.9611 8.8630 -2.6295 22 6 6.2471 10.1025 -2.0855 23 6 6.1773 10.2970 -0.7175 24 6 5.8209 9.2548 0.1132 25 8 5.0455 6.9428 1.7946 26 6 4.6775 5.7318 2.2433 27 6 4.4488 5.3410 3.6807 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 1.6767 1.9562 0.8900 34 1 1.6767 1.9564 -0.8900 35 1 3.9337 0.9286 -0.8890 36 1 3.9330 0.9287 0.8909 37 1 6.1709 1.0890 -2.5144 38 1 5.3899 6.8429 -2.2348 39 1 6.0180 8.7175 -3.6982 40 1 6.5263 10.9217 -2.7315 41 1 6.4022 11.2669 -0.2990 42 1 5.7664 9.4081 1.1809 43 1 4.6282 6.2022 4.3243 44 1 3.4204 5.0019 3.8059 45 1 5.1323 4.5362 3.9515 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001147315929.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:27:00 Heat of formation + Delta-G solvation = 10.352921 kcal Electronic energy + Delta-G solvation = -28018.119362 eV Core-core repulsion = 24195.308005 eV Total energy + Delta-G solvation = -3822.811357 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.73772 -38.95992 -38.41798 -35.35862 -34.35419 -33.75676 -32.55665 -31.42081 -30.93333 -30.63077 -28.57342 -26.47930 -24.84598 -23.99557 -22.88154 -22.59291 -21.46445 -20.70276 -20.16059 -19.16245 -17.94793 -16.73910 -16.37881 -15.80835 -15.61290 -15.04448 -14.75976 -14.71063 -14.45236 -14.24102 -13.80264 -13.61804 -13.41909 -13.08955 -13.05807 -12.86855 -12.67006 -12.50307 -12.21470 -12.08774 -11.91863 -11.43508 -11.35669 -11.19378 -11.04965 -11.00391 -10.74696 -10.56019 -10.49136 -10.37824 -10.27999 -9.74304 -9.46095 -9.33282 -9.04247 -8.96899 -8.59472 -7.81421 -7.34801 -6.27291 -3.93932 0.85268 1.39601 1.95138 2.89644 2.90337 3.20193 3.25546 3.29654 3.89344 4.12862 4.25355 4.44066 4.68195 4.88662 4.94118 5.08629 5.11930 5.24432 5.39348 5.46466 5.49203 5.51663 5.67005 5.67729 5.74555 5.88715 5.90262 6.02620 6.05739 6.09462 6.25132 6.29915 6.36769 6.38923 6.41461 6.46015 6.52171 6.55881 6.57320 6.71664 6.80801 6.84156 6.91437 7.13732 7.42156 7.70757 8.00337 8.19243 8.60354 9.16269 9.51957 9.93728 10.76313 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.011162 B = 0.004467 C = 0.003496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2507.922812 B = 6266.422044 C = 8007.745542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.119 4.119 3 C -0.129 4.129 4 C 0.118 3.882 5 N -0.412 5.412 6 C -0.317 4.317 7 H 0.118 0.882 8 C 0.039 3.961 9 N -0.870 5.870 10 Si 0.913 3.087 11 H -0.276 1.276 12 H -0.285 1.285 13 H -0.268 1.268 14 C 0.534 3.466 15 O -0.602 6.602 16 C -0.014 4.014 17 N -0.395 5.395 18 C 0.187 3.813 19 C 0.002 3.998 20 C -0.073 4.073 21 C -0.121 4.121 22 C -0.112 4.112 23 C -0.124 4.124 24 C -0.098 4.098 25 O -0.202 6.202 26 C -0.001 4.001 27 C -0.052 4.052 28 H 0.050 0.950 29 H 0.047 0.953 30 H 0.050 0.950 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.052 0.948 34 H 0.059 0.941 35 H 0.105 0.895 36 H 0.054 0.946 37 H 0.267 0.733 38 H 0.142 0.858 39 H 0.129 0.871 40 H 0.123 0.877 41 H 0.126 0.874 42 H 0.128 0.872 43 H 0.066 0.934 44 H 0.092 0.908 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.852 11.110 1.232 11.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.157 4.157 3 C -0.167 4.167 4 C -0.005 4.005 5 N -0.127 5.127 6 C -0.446 4.446 7 H 0.136 0.864 8 C -0.165 4.165 9 N -0.507 5.507 10 Si 0.739 3.261 11 H -0.201 1.201 12 H -0.210 1.210 13 H -0.192 1.192 14 C 0.322 3.678 15 O -0.489 6.489 16 C -0.137 4.137 17 N -0.124 5.124 18 C -0.017 4.017 19 C 0.001 3.999 20 C -0.092 4.092 21 C -0.139 4.139 22 C -0.130 4.130 23 C -0.142 4.142 24 C -0.118 4.118 25 O -0.089 6.089 26 C -0.057 4.057 27 C -0.108 4.108 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.071 0.929 34 H 0.077 0.923 35 H 0.123 0.877 36 H 0.073 0.927 37 H 0.077 0.923 38 H 0.160 0.840 39 H 0.147 0.853 40 H 0.141 0.859 41 H 0.144 0.856 42 H 0.146 0.854 43 H 0.085 0.915 44 H 0.111 0.889 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -1.847 10.442 1.001 10.651 hybrid contribution 0.293 0.486 -0.349 0.666 sum -1.554 10.927 0.652 11.057 Atomic orbital electron populations 1.21759 0.96637 1.00678 1.01477 1.21421 0.94955 0.97619 1.01679 1.21923 0.97741 0.95641 1.01419 1.21440 0.90974 0.84436 1.03667 1.43355 1.52621 1.11628 1.05093 1.20165 1.33754 0.99132 0.91514 0.86442 1.25451 0.94534 0.96180 1.00358 1.69915 1.30910 1.15757 1.34158 0.86152 0.79000 0.78562 0.82367 1.20140 1.21015 1.19204 1.17005 0.82453 0.83750 0.84556 1.90622 1.58228 1.68888 1.31133 1.21794 1.07245 0.97222 0.87453 1.71612 1.12015 0.99580 1.29206 1.23948 1.04701 0.94572 0.78457 1.17299 1.02363 0.89096 0.91143 1.21337 0.96182 1.00310 0.91379 1.21119 0.99976 0.92686 1.00101 1.21277 0.99249 0.97308 0.95206 1.20997 1.00927 0.98710 0.93579 1.21204 0.98507 0.91729 1.00315 1.84224 1.67051 1.33575 1.24083 1.23661 1.02031 0.81744 0.98256 1.20243 1.04484 1.01195 0.84893 0.93041 0.93406 0.93094 0.92189 0.92342 0.92883 0.92259 0.87677 0.92716 0.92296 0.83981 0.85302 0.85864 0.85639 0.85429 0.91469 0.88905 0.88759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 9.91 37.16 0.37 -1.72 16 2 C -0.12 -1.99 5.93 -26.73 -0.16 -2.15 16 3 C -0.13 -2.63 5.50 -26.74 -0.15 -2.78 16 4 C 0.12 2.85 4.89 -4.04 -0.02 2.83 16 5 N -0.41 -10.78 2.51 -116.05 -0.29 -11.08 16 6 C -0.32 -8.38 8.07 -15.00 -0.12 -8.50 16 7 H 0.12 3.10 5.64 -52.48 -0.30 2.81 16 8 C 0.04 1.02 5.02 -17.46 -0.09 0.93 16 9 N -0.87 -23.61 11.43 55.50 0.63 -22.98 16 10 Si 0.91 20.14 29.58 -169.99 -5.03 15.11 16 11 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 12 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 13 H -0.27 -5.75 7.11 56.52 0.40 -5.34 16 14 C 0.53 13.76 7.58 -12.55 -0.10 13.67 16 15 O -0.60 -15.69 15.24 5.24 0.08 -15.61 16 16 C -0.01 -0.33 6.72 -83.09 -0.56 -0.89 16 17 N -0.39 -9.00 7.62 -8.27 -0.06 -9.06 16 18 C 0.19 3.66 7.88 -14.01 -0.11 3.55 16 19 C 0.00 0.03 5.87 -104.98 -0.62 -0.58 16 20 C -0.07 -1.14 9.68 -39.19 -0.38 -1.52 16 21 C -0.12 -1.49 10.03 -39.64 -0.40 -1.88 16 22 C -0.11 -1.18 10.04 -39.50 -0.40 -1.57 16 23 C -0.12 -1.33 10.03 -39.64 -0.40 -1.73 16 24 C -0.10 -1.29 9.71 -39.19 -0.38 -1.67 16 25 O -0.20 -3.77 10.45 5.27 0.06 -3.72 16 26 C 0.00 -0.02 7.44 -34.99 -0.26 -0.28 16 27 C -0.05 -0.81 9.12 36.01 0.33 -0.48 16 28 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.11 2.68 5.64 -51.93 -0.29 2.39 16 36 H 0.05 1.36 7.53 -51.92 -0.39 0.97 16 37 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 38 H 0.14 2.45 7.82 -52.49 -0.41 2.04 16 39 H 0.13 1.31 8.06 -52.49 -0.42 0.88 16 40 H 0.12 0.94 8.06 -52.48 -0.42 0.52 16 41 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 42 H 0.13 1.51 7.89 -52.49 -0.41 1.10 16 43 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.09 1.45 8.10 -51.92 -0.42 1.03 16 45 H 0.09 1.52 8.04 -51.93 -0.42 1.11 16 LS Contribution 379.86 15.07 5.72 5.72 Total: -1.00 -30.79 379.86 -8.75 -39.53 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: -6.43 Total: 6.86 kcal Atomic # 6 Polarization: -1.35 SS G_CDS: -3.43 Total: -4.78 kcal Atomic # 7 Polarization: -43.40 SS G_CDS: 0.28 Total: -43.12 kcal Atomic # 8 Polarization: -19.47 SS G_CDS: 0.13 Total: -19.33 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.03 Total: 15.11 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -30.79 -8.75 -39.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001147315929.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.888 kcal (2) G-P(sol) polarization free energy of solvation -30.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.535 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds