Wall clock time and date at job start Tue Mar 31 2020 16:26:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.47105 * 2 1 4 4 C 1.52996 * 109.47199 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.47431 * 180.02562 * 4 3 2 6 6 C 1.36936 * 119.99600 * 264.17670 * 5 4 3 7 7 H 1.08007 * 120.00043 * 139.02378 * 6 5 4 8 8 C 1.38984 * 120.00163 * 319.01917 * 6 5 4 9 9 N 1.31408 * 120.00132 * 344.63514 * 8 6 5 10 10 Si 1.86803 * 120.00287 * 164.63538 * 8 6 5 11 11 H 1.48497 * 109.47239 * 90.00307 * 10 8 6 12 12 H 1.48499 * 109.47164 * 210.00371 * 10 8 6 13 13 H 1.48496 * 109.46857 * 330.00168 * 10 8 6 14 14 C 1.34773 * 120.00549 * 84.16837 * 5 4 3 15 15 O 1.21646 * 119.99410 * 5.02770 * 14 5 4 16 16 C 1.47363 * 120.00396 * 185.01965 * 14 5 4 17 17 N 1.35787 * 126.37316 * 358.35163 * 16 14 5 18 18 C 1.30897 * 108.42661 * 180.02562 * 17 16 14 19 19 C 1.47863 * 125.48266 * 180.02562 * 18 17 16 20 20 C 1.39549 * 120.14108 * 359.72913 * 19 18 17 21 21 C 1.37966 * 119.85526 * 179.76500 * 20 19 18 22 22 C 1.38349 * 120.14016 * 0.48985 * 21 20 19 23 23 C 1.38355 * 120.28977 * 359.78208 * 22 21 20 24 24 C 1.37963 * 120.14382 * 359.95919 * 23 22 21 25 25 O 1.34479 * 109.03810 * 0.02562 * 18 17 16 26 26 C 1.34286 * 108.17884 * 359.97438 * 25 18 17 27 27 C 1.50701 * 126.44890 * 179.73935 * 26 25 18 28 28 H 1.09005 * 109.46708 * 60.00128 * 1 2 3 29 29 H 1.09004 * 109.46870 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46830 * 299.99376 * 1 2 3 31 31 H 1.09002 * 109.47201 * 239.99983 * 2 1 3 32 32 H 1.09004 * 109.47152 * 120.00497 * 2 1 3 33 33 H 1.09003 * 109.46622 * 60.00136 * 3 2 1 34 34 H 1.09004 * 109.47521 * 300.00271 * 3 2 1 35 35 H 1.08993 * 109.47401 * 59.99985 * 4 3 2 36 36 H 1.09009 * 109.47166 * 300.00071 * 4 3 2 37 37 H 0.97000 * 120.00178 * 179.97438 * 9 8 6 38 38 H 1.07997 * 120.07308 * 359.97438 * 20 19 18 39 39 H 1.08001 * 119.92971 * 180.23002 * 21 20 19 40 40 H 1.08003 * 119.85791 * 179.76102 * 22 21 20 41 41 H 1.08001 * 119.92616 * 179.97438 * 23 22 21 42 42 H 1.08002 * 120.07190 * 180.02562 * 24 23 22 43 43 H 1.08995 * 109.47353 * 0.02562 * 27 26 25 44 44 H 1.09007 * 109.47358 * 120.02332 * 27 26 25 45 45 H 1.09003 * 109.46812 * 240.01970 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0584 2.8237 0.0013 6 6 4.4005 3.4294 -1.1782 7 1 4.1302 4.4601 -1.3544 8 6 5.0958 2.7178 -2.1488 9 7 5.6859 1.5858 -1.8370 10 14 5.1915 3.3704 -3.8965 11 1 6.3857 4.2422 -4.0347 12 1 5.2969 2.2325 -4.8447 13 1 3.9679 4.1554 -4.1993 14 6 4.1708 3.4983 1.1626 15 8 3.9546 2.9328 2.2177 16 6 4.5557 4.9207 1.1542 17 7 4.8559 5.6673 0.0605 18 6 5.1485 6.8805 0.4552 19 6 5.5308 8.0022 -0.4292 20 6 5.6085 7.8111 -1.8094 21 6 5.9611 8.8630 -2.6295 22 6 6.2471 10.1025 -2.0855 23 6 6.1773 10.2970 -0.7175 24 6 5.8209 9.2548 0.1132 25 8 5.0455 6.9428 1.7946 26 6 4.6775 5.7318 2.2433 27 6 4.4488 5.3410 3.6807 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 1.6767 1.9562 0.8900 34 1 1.6767 1.9564 -0.8900 35 1 3.9337 0.9286 -0.8890 36 1 3.9330 0.9287 0.8909 37 1 6.1709 1.0890 -2.5144 38 1 5.3899 6.8429 -2.2348 39 1 6.0180 8.7175 -3.6982 40 1 6.5263 10.9217 -2.7315 41 1 6.4022 11.2669 -0.2990 42 1 5.7664 9.4081 1.1809 43 1 4.6282 6.2022 4.3243 44 1 3.4204 5.0019 3.8059 45 1 5.1323 4.5362 3.9515 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001147315929.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:26:59 Heat of formation + Delta-G solvation = -6.608931 kcal Electronic energy + Delta-G solvation = -28018.854883 eV Core-core repulsion = 24195.308005 eV Total energy + Delta-G solvation = -3823.546878 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -44.30194 -40.40740 -39.92317 -37.21197 -35.98795 -35.38455 -33.90681 -33.38406 -31.92291 -31.83276 -30.19410 -27.95503 -26.78652 -25.51180 -24.35163 -23.67126 -22.84260 -22.13734 -21.74940 -21.02682 -19.54473 -18.06354 -17.95641 -17.71109 -16.83942 -16.69292 -16.32576 -16.16287 -16.00543 -15.69043 -15.60763 -14.82405 -14.66859 -14.46042 -14.37616 -14.30303 -14.14790 -13.82790 -13.68277 -13.59292 -13.43117 -13.09272 -12.93060 -12.80473 -12.38173 -12.35036 -12.17754 -12.10240 -12.01976 -11.97481 -11.88266 -11.45483 -11.21560 -11.01296 -10.59175 -10.55078 -9.94517 -9.44177 -9.13683 -8.27093 -6.00553 -0.34561 0.40481 0.42807 1.34370 1.40937 1.42992 1.48652 1.54068 2.29071 2.50024 2.68618 2.87547 2.99262 3.17108 3.70881 3.95258 4.00860 4.04414 4.08109 4.18546 4.25492 4.26846 4.32787 4.43412 4.48602 4.53053 4.60027 4.60199 4.81047 4.83447 4.84970 4.95187 4.98061 5.01191 5.07893 5.09746 5.15649 5.16477 5.35619 5.41128 5.45809 5.49960 5.51826 5.53762 5.69345 5.97084 6.03312 6.55443 6.61794 7.14172 7.52476 7.93387 8.77029 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.011162 B = 0.004467 C = 0.003496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2507.922812 B = 6266.422044 C = 8007.745542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.114 4.114 3 C -0.115 4.115 4 C 0.121 3.879 5 N -0.429 5.429 6 C -0.327 4.327 7 H 0.113 0.887 8 C -0.003 4.003 9 N -0.903 5.903 10 Si 0.975 3.025 11 H -0.272 1.272 12 H -0.278 1.278 13 H -0.259 1.259 14 C 0.524 3.476 15 O -0.617 6.617 16 C -0.065 4.065 17 N -0.436 5.436 18 C 0.200 3.800 19 C -0.035 4.035 20 C -0.095 4.095 21 C -0.123 4.123 22 C -0.093 4.093 23 C -0.114 4.114 24 C -0.096 4.096 25 O -0.191 6.191 26 C 0.016 3.984 27 C -0.048 4.048 28 H 0.054 0.946 29 H 0.072 0.928 30 H 0.052 0.948 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.041 0.959 34 H 0.052 0.948 35 H 0.090 0.910 36 H 0.036 0.964 37 H 0.269 0.731 38 H 0.111 0.889 39 H 0.150 0.850 40 H 0.165 0.835 41 H 0.166 0.834 42 H 0.139 0.861 43 H 0.109 0.891 44 H 0.094 0.906 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.802 14.410 0.596 14.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.152 4.152 3 C -0.153 4.153 4 C -0.002 4.002 5 N -0.144 5.144 6 C -0.456 4.456 7 H 0.131 0.869 8 C -0.204 4.204 9 N -0.542 5.542 10 Si 0.799 3.201 11 H -0.197 1.197 12 H -0.203 1.203 13 H -0.183 1.183 14 C 0.313 3.687 15 O -0.505 6.505 16 C -0.187 4.187 17 N -0.165 5.165 18 C -0.005 4.005 19 C -0.036 4.036 20 C -0.115 4.115 21 C -0.141 4.141 22 C -0.112 4.112 23 C -0.132 4.132 24 C -0.115 4.115 25 O -0.079 6.079 26 C -0.041 4.041 27 C -0.105 4.105 28 H 0.073 0.927 29 H 0.091 0.909 30 H 0.071 0.929 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.060 0.940 34 H 0.071 0.929 35 H 0.108 0.892 36 H 0.054 0.946 37 H 0.078 0.922 38 H 0.130 0.870 39 H 0.167 0.833 40 H 0.183 0.817 41 H 0.183 0.817 42 H 0.157 0.843 43 H 0.128 0.872 44 H 0.112 0.888 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -1.810 13.728 0.366 13.851 hybrid contribution 0.358 -0.347 -0.115 0.512 sum -1.452 13.380 0.250 13.461 Atomic orbital electron populations 1.21711 0.94040 1.02435 1.01761 1.21401 0.97167 0.94745 1.01910 1.21787 0.94998 0.98173 1.00369 1.21406 0.93290 0.83666 1.01794 1.43607 1.53237 1.12204 1.05354 1.20292 1.34184 0.99221 0.91877 0.86939 1.26255 0.93907 0.96348 1.03914 1.70027 1.31849 1.16976 1.35331 0.85203 0.79248 0.78128 0.77567 1.19739 1.20298 1.18338 1.17428 0.81927 0.84994 0.84324 1.90567 1.58888 1.69721 1.31365 1.21672 1.10763 0.96871 0.89353 1.71466 1.14199 1.01066 1.29769 1.24662 1.02411 0.94583 0.78881 1.17500 1.05650 0.89497 0.90971 1.21275 0.98117 1.00351 0.91754 1.21400 0.99269 0.92576 1.00850 1.21784 0.96316 0.97280 0.95777 1.21478 0.98809 0.99422 0.93488 1.21431 0.97795 0.90884 1.01411 1.84255 1.66875 1.32874 1.23861 1.24248 0.99522 0.81265 0.99072 1.20397 1.04299 1.02751 0.83006 0.92711 0.90897 0.92900 0.91962 0.92143 0.94048 0.92946 0.89206 0.94594 0.92177 0.87048 0.83265 0.81746 0.81656 0.84292 0.87211 0.88792 0.89293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.85 9.91 71.98 0.71 -3.14 16 2 C -0.11 -3.87 5.93 30.59 0.18 -3.69 16 3 C -0.11 -4.91 5.50 30.59 0.17 -4.74 16 4 C 0.12 6.23 4.89 86.38 0.42 6.65 16 5 N -0.43 -23.86 2.51 -639.32 -1.60 -25.46 16 6 C -0.33 -18.28 8.07 84.08 0.68 -17.60 16 7 H 0.11 6.33 5.64 -2.91 -0.02 6.31 16 8 C 0.00 -0.17 5.02 84.94 0.43 0.25 16 9 N -0.90 -51.23 11.43 21.67 0.25 -50.98 16 10 Si 0.98 42.63 29.58 68.60 2.03 44.66 16 11 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 12 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 13 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 14 C 0.52 28.64 7.58 86.65 0.66 29.30 16 15 O -0.62 -33.89 15.24 -4.18 -0.06 -33.95 16 16 C -0.07 -3.23 6.72 40.49 0.27 -2.96 16 17 N -0.44 -20.99 7.62 -294.27 -2.24 -23.23 16 18 C 0.20 8.03 7.88 87.38 0.69 8.72 16 19 C -0.03 -1.13 5.87 -20.10 -0.12 -1.25 16 20 C -0.10 -2.99 9.68 22.52 0.22 -2.77 16 21 C -0.12 -2.73 10.03 22.23 0.22 -2.51 16 22 C -0.09 -1.52 10.04 22.32 0.22 -1.30 16 23 C -0.11 -1.92 10.03 22.23 0.22 -1.70 16 24 C -0.10 -2.28 9.71 22.52 0.22 -2.06 16 25 O -0.19 -7.14 10.45 -4.04 -0.04 -7.19 16 26 C 0.02 0.63 7.44 25.24 0.19 0.81 16 27 C -0.05 -1.49 9.12 71.24 0.65 -0.84 16 28 H 0.05 1.44 8.14 -2.38 -0.02 1.42 16 29 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.05 1.40 8.14 -2.39 -0.02 1.39 16 31 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 35 H 0.09 4.87 5.64 -2.39 -0.01 4.85 16 36 H 0.04 1.92 7.53 -2.38 -0.02 1.90 16 37 H 0.27 14.33 8.31 -92.71 -0.77 13.56 16 38 H 0.11 4.10 7.82 -2.91 -0.02 4.08 16 39 H 0.15 2.61 8.06 -2.91 -0.02 2.59 16 40 H 0.17 1.42 8.06 -2.91 -0.02 1.39 16 41 H 0.17 1.53 8.06 -2.91 -0.02 1.51 16 42 H 0.14 2.91 7.89 -2.91 -0.02 2.89 16 43 H 0.11 2.42 8.14 -2.39 -0.02 2.40 16 44 H 0.09 2.92 8.10 -2.38 -0.02 2.90 16 45 H 0.09 2.88 8.04 -2.39 -0.02 2.87 16 Total: -1.00 -72.65 379.86 5.35 -67.30 By element: Atomic # 1 Polarization: 26.68 SS G_CDS: 0.99 Total: 27.68 kcal Atomic # 6 Polarization: -4.85 SS G_CDS: 6.03 Total: 1.18 kcal Atomic # 7 Polarization: -96.07 SS G_CDS: -3.60 Total: -99.67 kcal Atomic # 8 Polarization: -41.04 SS G_CDS: -0.11 Total: -41.14 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.66 kcal Total: -72.65 5.35 -67.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001147315929.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.689 kcal (2) G-P(sol) polarization free energy of solvation -72.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds