Wall clock time and date at job start Tue Mar 31 2020 16:26:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46694 * 2 1 4 4 C 1.53007 * 109.47026 * 180.02562 * 3 2 1 5 5 N 1.46492 * 109.47098 * 180.02562 * 4 3 2 6 6 C 1.36743 * 119.99962 * 94.01399 * 5 4 3 7 7 H 1.07998 * 120.00023 * 213.66709 * 6 5 4 8 8 C 1.39128 * 120.00261 * 33.39556 * 6 5 4 9 9 N 1.31310 * 119.99805 * 23.06905 * 8 6 5 10 10 Si 1.86801 * 119.99998 * 203.07457 * 8 6 5 11 11 H 1.48504 * 109.46994 * 89.99714 * 10 8 6 12 12 H 1.48500 * 109.47035 * 209.99394 * 10 8 6 13 13 H 1.48494 * 109.47059 * 329.99840 * 10 8 6 14 14 C 1.34777 * 120.00517 * 274.00964 * 5 4 3 15 15 O 1.21662 * 119.99502 * 0.02562 * 14 5 4 16 16 C 1.47276 * 120.00739 * 180.02562 * 14 5 4 17 17 C 1.39850 * 121.44481 * 270.00481 * 16 14 5 18 18 O 1.35574 * 120.35527 * 359.97438 * 17 16 14 19 19 C 1.39920 * 119.28143 * 179.97438 * 17 16 14 20 20 C 1.50699 * 118.76643 * 179.97438 * 19 17 16 21 21 N 1.30669 * 122.46582 * 0.02562 * 19 17 16 22 22 C 1.33590 * 122.57601 * 359.97192 * 21 19 17 23 23 C 1.40643 * 121.06046 * 180.02562 * 22 21 19 24 24 C 1.36143 * 119.72931 * 179.12498 * 23 22 21 25 25 C 1.39275 * 121.09152 * 0.89616 * 24 23 22 26 26 C 1.36379 * 120.78478 * 359.38607 * 25 24 23 27 27 C 1.39892 * 119.57755 * 0.02562 * 26 25 24 28 28 H 1.08999 * 109.47419 * 60.00120 * 1 2 3 29 29 H 1.09001 * 109.46638 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46858 * 299.99854 * 1 2 3 31 31 H 1.08994 * 109.47003 * 240.00106 * 2 1 3 32 32 H 1.08999 * 109.47419 * 119.99880 * 2 1 3 33 33 H 1.09004 * 109.47348 * 60.00447 * 3 2 1 34 34 H 1.08994 * 109.47284 * 299.99651 * 3 2 1 35 35 H 1.08994 * 109.46971 * 59.99922 * 4 3 2 36 36 H 1.09006 * 109.46877 * 300.00211 * 4 3 2 37 37 H 0.97001 * 120.00068 * 179.97438 * 9 8 6 38 38 H 0.96705 * 114.00466 * 90.00706 * 18 17 16 39 39 H 1.09008 * 109.46399 * 90.00286 * 20 19 17 40 40 H 1.09000 * 109.47469 * 209.99927 * 20 19 17 41 41 H 1.08995 * 109.46999 * 330.00708 * 20 19 17 42 42 H 1.07997 * 120.13468 * 359.97438 * 23 22 21 43 43 H 1.08002 * 119.45611 * 180.30651 * 24 23 22 44 44 H 1.07996 * 119.60717 * 179.40196 * 25 24 23 45 45 H 1.07990 * 120.20788 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 7 4.0582 2.8238 0.0000 6 6 4.3647 3.4401 1.1815 7 1 4.1970 4.5007 1.2968 8 6 4.8875 2.6998 2.2372 9 7 5.5028 1.5640 2.0013 10 14 4.7138 3.3215 3.9901 11 1 3.4522 2.8022 4.5768 12 1 5.8665 2.8502 4.7990 13 1 4.6844 4.8061 3.9881 14 6 4.2054 3.4871 -1.1640 15 8 3.9323 2.9390 -2.2152 16 6 4.6968 4.8755 -1.1635 17 6 3.8183 5.9603 -1.0787 18 8 2.4809 5.7540 -0.9948 19 6 4.3344 7.2608 -1.0814 20 6 3.3773 8.4212 -0.9902 21 7 5.6153 7.5069 -1.1610 22 6 6.5302 6.5371 -1.2454 23 6 7.9014 6.8384 -1.3292 24 6 8.8117 5.8283 -1.3962 25 6 8.4079 4.4954 -1.4018 26 6 7.0866 4.1660 -1.3277 27 6 6.1259 5.1796 -1.2456 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 3.9329 0.9290 -0.8908 36 1 3.9337 0.9286 0.8892 37 1 5.8676 1.0481 2.7372 38 1 2.1514 5.6728 -0.0893 39 1 3.2143 8.6762 0.0571 40 1 3.7975 9.2808 -1.5122 41 1 2.4277 8.1458 -1.4491 42 1 8.2317 7.8666 -1.3266 43 1 9.8639 6.0647 -1.4554 44 1 9.1500 3.7134 -1.4654 45 1 6.7839 3.1294 -1.3332 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001149198351.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:26:24 Heat of formation + Delta-G solvation = -32.039787 kcal Electronic energy + Delta-G solvation = -28881.299261 eV Core-core repulsion = 25056.649619 eV Total energy + Delta-G solvation = -3824.649642 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.55207 -38.57409 -37.85213 -35.96822 -35.44482 -34.05838 -32.42828 -31.63577 -31.39112 -29.28047 -28.36635 -27.47665 -25.14639 -24.22992 -22.82494 -22.30467 -21.74340 -20.46745 -19.25486 -18.60275 -17.79950 -17.26180 -16.51732 -15.88248 -15.29710 -14.85665 -14.81039 -14.64005 -14.34942 -14.18605 -13.84981 -13.71705 -13.43797 -13.11866 -12.78010 -12.74715 -12.59789 -12.30477 -12.14556 -12.02866 -11.61883 -11.52955 -11.40495 -11.34672 -11.09317 -10.98888 -10.68273 -10.61372 -10.57940 -10.44259 -10.34400 -9.86263 -9.66913 -9.44362 -9.15102 -8.60745 -8.17788 -7.77792 -7.69154 -6.56784 -4.22111 0.70332 1.14126 2.28788 2.98712 3.11371 3.12167 3.15403 3.55499 3.94095 4.24585 4.41013 4.47517 4.53362 4.75904 5.07865 5.13614 5.24836 5.32080 5.44510 5.49583 5.54640 5.61310 5.62641 5.71208 5.75007 5.88794 6.00930 6.05464 6.16476 6.20559 6.22854 6.32685 6.35007 6.35716 6.41344 6.52032 6.63421 6.65577 6.77391 6.81917 6.90161 7.01164 7.16003 7.20429 7.34044 7.68244 7.89439 8.17410 8.25966 8.86829 9.26524 9.70641 10.43684 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.010313 B = 0.005241 C = 0.004691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2714.292204 B = 5341.439312 C = 5966.830632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.119 4.119 3 C -0.128 4.128 4 C 0.112 3.888 5 N -0.417 5.417 6 C -0.346 4.346 7 H 0.085 0.915 8 C 0.053 3.947 9 N -0.847 5.847 10 Si 0.910 3.090 11 H -0.273 1.273 12 H -0.281 1.281 13 H -0.269 1.269 14 C 0.507 3.493 15 O -0.588 6.588 16 C -0.018 4.018 17 C 0.059 3.941 18 O -0.480 6.480 19 C 0.151 3.849 20 C -0.103 4.103 21 N -0.475 5.475 22 C 0.124 3.876 23 C -0.102 4.102 24 C -0.102 4.102 25 C -0.128 4.128 26 C -0.062 4.062 27 C -0.065 4.065 28 H 0.051 0.949 29 H 0.047 0.953 30 H 0.050 0.950 31 H 0.057 0.943 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.055 0.945 35 H 0.054 0.946 36 H 0.111 0.889 37 H 0.273 0.727 38 H 0.389 0.611 39 H 0.077 0.923 40 H 0.076 0.924 41 H 0.081 0.919 42 H 0.131 0.869 43 H 0.125 0.875 44 H 0.125 0.875 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.623 5.331 -0.521 5.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.157 4.157 3 C -0.166 4.166 4 C -0.011 4.011 5 N -0.133 5.133 6 C -0.474 4.474 7 H 0.103 0.897 8 C -0.155 4.155 9 N -0.482 5.482 10 Si 0.736 3.264 11 H -0.199 1.199 12 H -0.207 1.207 13 H -0.193 1.193 14 C 0.294 3.706 15 O -0.474 6.474 16 C -0.029 4.029 17 C 0.011 3.989 18 O -0.289 6.289 19 C -0.005 4.005 20 C -0.160 4.160 21 N -0.186 5.186 22 C 0.004 3.996 23 C -0.121 4.121 24 C -0.122 4.122 25 C -0.146 4.146 26 C -0.081 4.081 27 C -0.068 4.068 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.129 0.871 37 H 0.083 0.917 38 H 0.245 0.755 39 H 0.096 0.904 40 H 0.095 0.905 41 H 0.100 0.900 42 H 0.149 0.851 43 H 0.143 0.857 44 H 0.143 0.857 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -0.240 5.692 -1.513 5.895 hybrid contribution -0.338 -0.696 1.621 1.797 sum -0.578 4.996 0.109 5.030 Atomic orbital electron populations 1.21755 0.96546 1.00724 1.01522 1.21421 0.95075 0.97601 1.01611 1.21892 0.97498 0.95705 1.01537 1.21552 0.91516 0.84158 1.03923 1.43381 1.53671 1.12044 1.04198 1.19262 1.43865 0.94786 0.89440 0.89747 1.25276 0.93736 0.96162 1.00349 1.69875 1.30384 1.14915 1.33010 0.86194 0.78290 0.79572 0.82368 1.19908 1.20680 1.19304 1.17795 0.82697 0.85441 0.84651 1.90700 1.56362 1.68699 1.31618 1.21992 0.92027 0.95294 0.93593 1.19203 0.84066 0.91251 1.04364 1.84719 1.17494 1.94083 1.32565 1.21608 0.91190 0.93286 0.94413 1.20708 0.97331 0.95006 1.02961 1.67297 1.01091 1.35850 1.14362 1.18648 0.93678 0.87764 0.99498 1.20636 0.90100 0.99780 1.01566 1.20812 0.99433 0.92608 0.99317 1.20872 0.95866 0.96384 1.01453 1.20964 0.92419 0.99283 0.95393 1.19531 0.91720 0.94079 1.01464 0.93011 0.93393 0.93041 0.92374 0.92251 0.92256 0.92644 0.92783 0.87113 0.91685 0.75491 0.90447 0.90485 0.89997 0.85109 0.85707 0.85723 0.85054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 9.91 37.16 0.37 -1.67 16 2 C -0.12 -1.94 5.93 -26.73 -0.16 -2.10 16 3 C -0.13 -2.50 5.52 -26.73 -0.15 -2.65 16 4 C 0.11 2.54 4.93 -4.04 -0.02 2.52 16 5 N -0.42 -10.02 2.55 -116.09 -0.30 -10.32 16 6 C -0.35 -8.32 8.72 -15.03 -0.13 -8.46 16 7 H 0.08 2.02 7.15 -52.49 -0.38 1.64 16 8 C 0.05 1.25 4.92 -17.44 -0.09 1.17 16 9 N -0.85 -20.85 11.32 55.50 0.63 -20.22 16 10 Si 0.91 18.67 29.61 -169.99 -5.03 13.63 16 11 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 12 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 13 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 14 C 0.51 12.49 5.67 -12.59 -0.07 12.42 16 15 O -0.59 -16.04 16.76 5.22 0.09 -15.95 16 16 C -0.02 -0.40 4.27 -102.37 -0.44 -0.83 16 17 C 0.06 1.17 6.56 -38.35 -0.25 0.92 16 18 O -0.48 -8.59 12.01 -18.42 -0.22 -8.82 16 19 C 0.15 2.67 6.79 -82.46 -0.56 2.11 16 20 C -0.10 -1.34 9.90 36.01 0.36 -0.98 16 21 N -0.48 -8.84 10.12 -7.17 -0.07 -8.92 16 22 C 0.12 2.37 6.62 -84.89 -0.56 1.81 16 23 C -0.10 -1.63 9.99 -39.43 -0.39 -2.02 16 24 C -0.10 -1.47 9.94 -39.95 -0.40 -1.87 16 25 C -0.13 -2.08 9.97 -39.87 -0.40 -2.48 16 26 C -0.06 -1.24 9.48 -39.63 -0.38 -1.62 16 27 C -0.07 -1.38 5.90 -104.72 -0.62 -2.00 16 28 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 32 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 33 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.05 1.16 8.14 -51.93 -0.42 0.73 16 35 H 0.05 1.29 7.55 -51.93 -0.39 0.90 16 36 H 0.11 2.64 5.31 -51.93 -0.28 2.36 16 37 H 0.27 6.35 8.31 -40.82 -0.34 6.01 16 38 H 0.39 5.53 9.06 45.56 0.41 5.95 16 39 H 0.08 0.88 8.14 -51.92 -0.42 0.46 16 40 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.08 1.00 7.46 -51.93 -0.39 0.61 16 42 H 0.13 1.76 8.06 -52.49 -0.42 1.34 16 43 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 44 H 0.12 1.70 8.06 -52.49 -0.42 1.27 16 45 H 0.13 2.89 7.36 -52.49 -0.39 2.50 16 LS Contribution 378.35 15.07 5.70 5.70 Total: -1.00 -29.92 378.35 -8.70 -38.62 By element: Atomic # 1 Polarization: 17.62 SS G_CDS: -5.61 Total: 12.01 kcal Atomic # 6 Polarization: -1.85 SS G_CDS: -3.88 Total: -5.73 kcal Atomic # 7 Polarization: -39.72 SS G_CDS: 0.26 Total: -39.46 kcal Atomic # 8 Polarization: -24.64 SS G_CDS: -0.13 Total: -24.77 kcal Atomic # 14 Polarization: 18.67 SS G_CDS: -5.03 Total: 13.63 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -29.92 -8.70 -38.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001149198351.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.576 kcal (2) G-P(sol) polarization free energy of solvation -29.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds