Wall clock time and date at job start Tue Mar 31 2020 16:26:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46694 * 2 1 4 4 C 1.53007 * 109.47026 * 180.02562 * 3 2 1 5 5 N 1.46492 * 109.47098 * 180.02562 * 4 3 2 6 6 C 1.36743 * 119.99962 * 94.01399 * 5 4 3 7 7 H 1.07998 * 120.00023 * 213.66709 * 6 5 4 8 8 C 1.39128 * 120.00261 * 33.39556 * 6 5 4 9 9 N 1.31310 * 119.99805 * 23.06905 * 8 6 5 10 10 Si 1.86801 * 119.99998 * 203.07457 * 8 6 5 11 11 H 1.48504 * 109.46994 * 89.99714 * 10 8 6 12 12 H 1.48500 * 109.47035 * 209.99394 * 10 8 6 13 13 H 1.48494 * 109.47059 * 329.99840 * 10 8 6 14 14 C 1.34777 * 120.00517 * 274.00964 * 5 4 3 15 15 O 1.21662 * 119.99502 * 0.02562 * 14 5 4 16 16 C 1.47276 * 120.00739 * 180.02562 * 14 5 4 17 17 C 1.39850 * 121.44481 * 270.00481 * 16 14 5 18 18 O 1.35574 * 120.35527 * 359.97438 * 17 16 14 19 19 C 1.39920 * 119.28143 * 179.97438 * 17 16 14 20 20 C 1.50699 * 118.76643 * 179.97438 * 19 17 16 21 21 N 1.30669 * 122.46582 * 0.02562 * 19 17 16 22 22 C 1.33590 * 122.57601 * 359.97192 * 21 19 17 23 23 C 1.40643 * 121.06046 * 180.02562 * 22 21 19 24 24 C 1.36143 * 119.72931 * 179.12498 * 23 22 21 25 25 C 1.39275 * 121.09152 * 0.89616 * 24 23 22 26 26 C 1.36379 * 120.78478 * 359.38607 * 25 24 23 27 27 C 1.39892 * 119.57755 * 0.02562 * 26 25 24 28 28 H 1.08999 * 109.47419 * 60.00120 * 1 2 3 29 29 H 1.09001 * 109.46638 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46858 * 299.99854 * 1 2 3 31 31 H 1.08994 * 109.47003 * 240.00106 * 2 1 3 32 32 H 1.08999 * 109.47419 * 119.99880 * 2 1 3 33 33 H 1.09004 * 109.47348 * 60.00447 * 3 2 1 34 34 H 1.08994 * 109.47284 * 299.99651 * 3 2 1 35 35 H 1.08994 * 109.46971 * 59.99922 * 4 3 2 36 36 H 1.09006 * 109.46877 * 300.00211 * 4 3 2 37 37 H 0.97001 * 120.00068 * 179.97438 * 9 8 6 38 38 H 0.96705 * 114.00466 * 90.00706 * 18 17 16 39 39 H 1.09008 * 109.46399 * 90.00286 * 20 19 17 40 40 H 1.09000 * 109.47469 * 209.99927 * 20 19 17 41 41 H 1.08995 * 109.46999 * 330.00708 * 20 19 17 42 42 H 1.07997 * 120.13468 * 359.97438 * 23 22 21 43 43 H 1.08002 * 119.45611 * 180.30651 * 24 23 22 44 44 H 1.07996 * 119.60717 * 179.40196 * 25 24 23 45 45 H 1.07990 * 120.20788 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 7 4.0582 2.8238 0.0000 6 6 4.3647 3.4401 1.1815 7 1 4.1970 4.5007 1.2968 8 6 4.8875 2.6998 2.2372 9 7 5.5028 1.5640 2.0013 10 14 4.7138 3.3215 3.9901 11 1 3.4522 2.8022 4.5768 12 1 5.8665 2.8502 4.7990 13 1 4.6844 4.8061 3.9881 14 6 4.2054 3.4871 -1.1640 15 8 3.9323 2.9390 -2.2152 16 6 4.6968 4.8755 -1.1635 17 6 3.8183 5.9603 -1.0787 18 8 2.4809 5.7540 -0.9948 19 6 4.3344 7.2608 -1.0814 20 6 3.3773 8.4212 -0.9902 21 7 5.6153 7.5069 -1.1610 22 6 6.5302 6.5371 -1.2454 23 6 7.9014 6.8384 -1.3292 24 6 8.8117 5.8283 -1.3962 25 6 8.4079 4.4954 -1.4018 26 6 7.0866 4.1660 -1.3277 27 6 6.1259 5.1796 -1.2456 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 3.9329 0.9290 -0.8908 36 1 3.9337 0.9286 0.8892 37 1 5.8676 1.0481 2.7372 38 1 2.1514 5.6728 -0.0893 39 1 3.2143 8.6762 0.0571 40 1 3.7975 9.2808 -1.5122 41 1 2.4277 8.1458 -1.4491 42 1 8.2317 7.8666 -1.3266 43 1 9.8639 6.0647 -1.4554 44 1 9.1500 3.7134 -1.4654 45 1 6.7839 3.1294 -1.3332 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001149198351.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:26:23 Heat of formation + Delta-G solvation = -50.069455 kcal Electronic energy + Delta-G solvation = -28882.081086 eV Core-core repulsion = 25056.649619 eV Total energy + Delta-G solvation = -3825.431468 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.02497 -40.34559 -39.28274 -37.37943 -37.23527 -35.64911 -33.95949 -33.43118 -32.66561 -30.71777 -29.89446 -28.72059 -27.02191 -25.76519 -24.26507 -23.66183 -23.22872 -21.99031 -21.08401 -19.99670 -19.33806 -18.83233 -18.16020 -17.49847 -16.90551 -16.58940 -16.24760 -16.19299 -15.89196 -15.61704 -15.41027 -15.13167 -14.91493 -14.54558 -14.26158 -14.06795 -13.91234 -13.86674 -13.69572 -13.19033 -13.13992 -13.09678 -12.94121 -12.81331 -12.63125 -12.25491 -12.21433 -12.16704 -12.02296 -11.99027 -11.87378 -11.48586 -11.24220 -11.17293 -10.86856 -10.33261 -9.64706 -9.54159 -9.15874 -8.41941 -6.13893 -0.74631 -0.25093 0.84054 1.31807 1.41931 1.50940 1.73202 1.81165 2.21404 2.69459 2.88939 2.92877 3.05353 3.20529 3.66740 3.72062 3.88128 3.94685 4.05035 4.15584 4.21291 4.28427 4.31552 4.41864 4.44865 4.60987 4.76481 4.78279 4.80612 4.82702 4.83535 4.92642 4.95718 5.01848 5.04656 5.14447 5.19700 5.29325 5.34863 5.36309 5.38832 5.47596 5.50595 5.52583 5.81260 5.87405 6.28951 6.55205 6.83117 6.97440 7.37121 7.82825 8.59757 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.010313 B = 0.005241 C = 0.004691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2714.292204 B = 5341.439312 C = 5966.830632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.115 4.115 3 C -0.114 4.114 4 C 0.112 3.888 5 N -0.419 5.419 6 C -0.356 4.356 7 H 0.084 0.916 8 C 0.017 3.983 9 N -0.874 5.874 10 Si 0.974 3.026 11 H -0.264 1.264 12 H -0.281 1.281 13 H -0.265 1.265 14 C 0.501 3.499 15 O -0.632 6.632 16 C -0.065 4.065 17 C 0.064 3.936 18 O -0.485 6.485 19 C 0.144 3.856 20 C -0.096 4.096 21 N -0.471 5.471 22 C 0.102 3.898 23 C -0.096 4.096 24 C -0.090 4.090 25 C -0.110 4.110 26 C -0.105 4.105 27 C -0.087 4.087 28 H 0.049 0.951 29 H 0.071 0.929 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.064 0.936 33 H 0.060 0.940 34 H 0.036 0.964 35 H 0.029 0.971 36 H 0.103 0.897 37 H 0.277 0.723 38 H 0.404 0.596 39 H 0.099 0.901 40 H 0.091 0.909 41 H 0.089 0.911 42 H 0.164 0.836 43 H 0.176 0.824 44 H 0.151 0.849 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.016 7.551 0.935 7.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.154 4.154 3 C -0.152 4.152 4 C -0.011 4.011 5 N -0.133 5.133 6 C -0.483 4.483 7 H 0.101 0.899 8 C -0.188 4.188 9 N -0.510 5.510 10 Si 0.798 3.202 11 H -0.189 1.189 12 H -0.206 1.206 13 H -0.189 1.189 14 C 0.290 3.710 15 O -0.522 6.522 16 C -0.076 4.076 17 C 0.015 3.985 18 O -0.296 6.296 19 C -0.012 4.012 20 C -0.153 4.153 21 N -0.181 5.181 22 C -0.017 4.017 23 C -0.115 4.115 24 C -0.109 4.109 25 C -0.127 4.127 26 C -0.124 4.124 27 C -0.089 4.089 28 H 0.069 0.931 29 H 0.090 0.910 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.055 0.945 35 H 0.047 0.953 36 H 0.120 0.880 37 H 0.087 0.913 38 H 0.263 0.737 39 H 0.117 0.883 40 H 0.110 0.890 41 H 0.108 0.892 42 H 0.181 0.819 43 H 0.194 0.806 44 H 0.169 0.831 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 0.390 7.908 -0.034 7.918 hybrid contribution -0.429 -1.396 1.131 1.847 sum -0.039 6.512 1.097 6.604 Atomic orbital electron populations 1.21707 0.94029 1.02398 1.01812 1.21408 0.97228 0.94973 1.01750 1.21754 0.94899 0.98029 1.00533 1.21554 0.93733 0.83717 1.02084 1.43564 1.53174 1.12208 1.04378 1.19405 1.44472 0.94953 0.89486 0.89850 1.26058 0.92940 0.96230 1.03606 1.69963 1.30877 1.15961 1.34200 0.85215 0.78391 0.79075 0.77553 1.18902 1.20618 1.18942 1.18194 0.82072 0.86658 0.84051 1.90628 1.58379 1.70198 1.32949 1.21994 0.93671 0.94453 0.97482 1.19446 0.84180 0.91637 1.03207 1.84659 1.16804 1.94126 1.33981 1.22223 0.91743 0.93668 0.93546 1.20809 0.96377 0.93427 1.04652 1.67423 1.01339 1.35323 1.14056 1.19107 0.95474 0.86898 1.00236 1.21096 0.88614 1.01853 0.99913 1.21308 1.01733 0.90889 0.96961 1.21273 0.94533 0.98556 0.98377 1.20825 0.94470 0.97462 0.99685 1.19727 0.91242 0.95473 1.02482 0.93139 0.91029 0.92355 0.92661 0.91724 0.92114 0.94488 0.95261 0.87980 0.91326 0.73716 0.88279 0.88995 0.89230 0.81891 0.80620 0.83100 0.88924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.75 9.91 71.98 0.71 -3.03 16 2 C -0.12 -3.80 5.93 30.60 0.18 -3.62 16 3 C -0.11 -4.65 5.52 30.60 0.17 -4.48 16 4 C 0.11 5.46 4.93 86.38 0.43 5.88 16 5 N -0.42 -21.42 2.55 -639.44 -1.63 -23.05 16 6 C -0.36 -17.76 8.72 84.14 0.73 -17.03 16 7 H 0.08 4.11 7.15 -2.91 -0.02 4.09 16 8 C 0.02 0.82 4.92 84.98 0.42 1.24 16 9 N -0.87 -44.35 11.32 21.69 0.25 -44.10 16 10 Si 0.97 38.08 29.61 68.60 2.03 40.11 16 11 H -0.26 -9.89 7.11 99.48 0.71 -9.19 16 12 H -0.28 -10.90 7.11 99.48 0.71 -10.19 16 13 H -0.27 -10.16 7.11 99.48 0.71 -9.45 16 14 C 0.50 26.58 5.67 86.62 0.49 27.07 16 15 O -0.63 -37.46 16.76 -4.23 -0.07 -37.53 16 16 C -0.06 -3.07 4.27 -18.40 -0.08 -3.15 16 17 C 0.06 2.57 6.56 23.07 0.15 2.72 16 18 O -0.48 -17.70 12.01 -88.82 -1.07 -18.77 16 19 C 0.14 5.00 6.79 43.14 0.29 5.29 16 20 C -0.10 -2.27 9.90 71.24 0.71 -1.56 16 21 N -0.47 -16.92 10.12 -176.61 -1.79 -18.71 16 22 C 0.10 3.85 6.62 40.31 0.27 4.12 16 23 C -0.10 -2.79 9.99 22.37 0.22 -2.57 16 24 C -0.09 -2.28 9.94 22.03 0.22 -2.07 16 25 C -0.11 -3.47 9.97 22.09 0.22 -3.25 16 26 C -0.11 -4.47 9.48 22.24 0.21 -4.26 16 27 C -0.09 -3.82 5.90 -19.93 -0.12 -3.93 16 28 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.07 1.56 8.14 -2.39 -0.02 1.55 16 30 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.05 1.83 8.14 -2.39 -0.02 1.82 16 32 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 33 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 34 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.03 1.52 7.55 -2.39 -0.02 1.50 16 36 H 0.10 5.14 5.31 -2.38 -0.01 5.12 16 37 H 0.28 13.12 8.31 -92.71 -0.77 12.35 16 38 H 0.40 11.65 9.06 -74.05 -0.67 10.98 16 39 H 0.10 1.95 8.14 -2.38 -0.02 1.93 16 40 H 0.09 1.92 8.14 -2.39 -0.02 1.91 16 41 H 0.09 2.00 7.46 -2.39 -0.02 1.98 16 42 H 0.16 3.65 8.06 -2.91 -0.02 3.62 16 43 H 0.18 2.74 8.06 -2.91 -0.02 2.72 16 44 H 0.15 3.85 8.06 -2.91 -0.02 3.83 16 45 H 0.09 4.53 7.36 -2.92 -0.02 4.51 16 Total: -1.00 -70.08 378.35 3.29 -66.79 By element: Atomic # 1 Polarization: 37.55 SS G_CDS: 0.34 Total: 37.89 kcal Atomic # 6 Polarization: -7.86 SS G_CDS: 5.23 Total: -2.63 kcal Atomic # 7 Polarization: -82.69 SS G_CDS: -3.17 Total: -85.86 kcal Atomic # 8 Polarization: -55.16 SS G_CDS: -1.14 Total: -56.30 kcal Atomic # 14 Polarization: 38.08 SS G_CDS: 2.03 Total: 40.11 kcal Total: -70.08 3.29 -66.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001149198351.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.719 kcal (2) G-P(sol) polarization free energy of solvation -70.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds