Wall clock time and date at job start Tue Mar 31 2020 16:23:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50702 * 120.00000 * 2 1 4 4 C 1.50696 * 120.00061 * 180.02562 * 2 1 3 5 5 N 1.46905 * 109.47393 * 94.99595 * 4 2 1 6 6 C 1.47642 * 110.99839 * 298.30929 * 5 4 2 7 7 C 1.50889 * 108.76093 * 153.48937 * 6 5 4 8 8 C 1.53622 * 111.71309 * 91.01632 * 7 6 5 9 9 O 1.44084 * 112.54745 * 318.63771 * 8 7 6 10 10 C 1.40627 * 116.73322 * 318.10672 * 9 8 7 11 11 H 1.08998 * 109.58172 * 333.96867 * 10 9 8 12 12 C 1.53006 * 109.52574 * 213.80295 * 10 9 8 13 13 N 1.46500 * 109.47373 * 65.34397 * 12 10 9 14 14 C 1.34769 * 120.00241 * 180.02562 * 13 12 10 15 15 O 1.21282 * 119.99850 * 359.97438 * 14 13 12 16 16 C 1.50702 * 120.00466 * 179.97438 * 14 13 12 17 17 S 1.81000 * 109.47238 * 179.97438 * 16 14 13 18 18 C 1.76205 * 99.99610 * 179.97438 * 17 16 14 19 19 H 1.07998 * 120.00040 * 0.02562 * 18 17 16 20 20 C 1.38796 * 119.99527 * 179.97438 * 18 17 16 21 21 N 1.31625 * 120.00398 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99780 * 180.02562 * 20 18 17 23 23 H 1.48493 * 109.47101 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47171 * 120.00313 * 22 20 18 25 25 H 1.48508 * 109.47025 * 240.00117 * 22 20 18 26 26 C 1.40437 * 110.99955 * 169.99984 * 5 4 2 27 27 H 1.07997 * 119.99825 * 179.97438 * 1 2 3 28 28 H 1.07998 * 119.99550 * 359.97438 * 1 2 3 29 29 H 1.08994 * 109.47079 * 270.00360 * 3 2 1 30 30 H 1.08997 * 109.46975 * 30.00520 * 3 2 1 31 31 H 1.09003 * 109.46984 * 150.00177 * 3 2 1 32 32 H 1.09005 * 109.47117 * 334.99992 * 4 2 1 33 33 H 1.09000 * 109.46915 * 214.99760 * 4 2 1 34 34 H 1.09004 * 109.58277 * 273.27525 * 6 5 4 35 35 H 1.08996 * 109.58558 * 33.70161 * 6 5 4 36 36 H 1.09001 * 109.03263 * 211.58965 * 7 6 5 37 37 H 1.09002 * 109.03854 * 330.43774 * 7 6 5 38 38 H 1.09005 * 108.86327 * 79.42918 * 8 7 6 39 39 H 1.08997 * 108.86695 * 197.84429 * 8 7 6 40 40 H 1.09004 * 109.47107 * 305.34350 * 12 10 9 41 41 H 1.09000 * 109.46866 * 185.34459 * 12 10 9 42 42 H 0.97003 * 119.99532 * 359.97438 * 13 12 10 43 43 H 1.09004 * 109.46923 * 59.99646 * 16 14 13 44 44 H 1.09004 * 109.46818 * 300.00196 * 16 14 13 45 45 H 0.97006 * 120.00587 * 179.97438 * 21 20 18 46 46 H 1.09002 * 109.04084 * 67.73592 * 26 5 4 47 47 H 1.08994 * 109.03969 * 308.87100 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 2.0636 -1.3051 -0.0006 5 7 2.4129 -1.6683 -1.3805 6 6 1.2001 -1.8602 -2.2003 7 6 1.5405 -1.5808 -3.6434 8 6 1.9872 -2.8535 -4.3787 9 8 2.8548 -3.6788 -3.5773 10 6 3.8425 -3.0163 -2.8269 11 1 4.0898 -2.0684 -3.3048 12 6 5.0956 -3.8905 -2.7461 13 7 5.6728 -4.0416 -4.0841 14 6 6.7893 -4.7762 -4.2574 15 8 7.3165 -5.3119 -3.3055 16 6 7.3828 -4.9322 -5.6338 17 16 8.8652 -5.9662 -5.5381 18 6 9.3376 -5.9815 -7.2356 19 1 8.7489 -5.4448 -7.9648 20 6 10.4668 -6.6826 -7.6353 21 7 11.1846 -7.3363 -6.7465 22 14 10.9680 -6.6983 -9.4348 23 1 10.0021 -5.8933 -10.2247 24 1 12.3279 -6.1183 -9.5749 25 1 10.9722 -8.0965 -9.9353 26 6 3.3052 -2.7524 -1.4050 27 1 -0.5400 -0.9353 -0.0004 28 1 -0.5399 0.9353 0.0004 29 1 2.2452 1.6198 -1.0276 30 1 1.4745 2.0647 0.5139 31 1 3.0160 1.1747 0.5138 32 1 1.4386 -2.0856 0.4334 33 1 2.9743 -1.1990 0.5889 34 1 0.8498 -2.8875 -2.0996 35 1 0.4222 -1.1726 -1.8684 36 1 0.6625 -1.1714 -4.1430 37 1 2.3451 -0.8464 -3.6832 38 1 1.1040 -3.4313 -4.6514 39 1 2.5142 -2.5681 -5.2891 40 1 4.8296 -4.8714 -2.3523 41 1 5.8250 -3.4198 -2.0868 42 1 5.2509 -3.6135 -4.8455 43 1 7.6491 -3.9514 -6.0279 44 1 6.6530 -5.4027 -6.2929 45 1 11.9736 -7.8266 -7.0259 46 1 2.7906 -3.6446 -1.0481 47 1 4.1435 -2.5381 -0.7422 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001149206885.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:23:44 Heat of formation + Delta-G solvation = -58.798143 kcal Electronic energy + Delta-G solvation = -25572.832263 eV Core-core repulsion = 21882.466243 eV Total energy + Delta-G solvation = -3690.366021 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.43392 -38.98423 -37.67502 -34.92037 -34.79764 -32.94514 -32.40401 -30.46332 -28.91314 -27.79185 -26.88534 -26.26853 -25.43248 -23.56465 -21.47184 -20.85644 -20.18544 -18.93760 -17.84225 -17.42270 -16.88026 -16.31754 -15.91747 -15.77589 -15.29283 -15.13941 -14.92077 -14.78315 -14.70643 -14.51950 -13.82738 -13.56670 -13.40312 -13.25367 -13.08944 -12.94518 -12.61086 -12.49797 -12.17154 -12.06234 -11.84025 -11.75234 -11.52314 -11.49217 -11.10993 -11.05260 -10.99268 -10.74852 -10.70566 -9.88916 -9.77102 -9.49531 -9.33171 -9.05427 -8.82711 -8.63457 -8.19661 -6.46674 -6.19327 -3.89368 1.70359 3.04760 3.15803 3.23223 3.29027 3.32830 3.36623 3.59165 3.81471 4.22758 4.30943 4.39460 4.43780 4.63053 4.64935 4.73504 4.84137 4.90118 5.02228 5.13557 5.15814 5.17817 5.22497 5.24393 5.26509 5.34602 5.36831 5.43951 5.48160 5.49522 5.61213 5.62059 5.64720 5.68569 5.80097 5.92669 5.94892 6.13653 6.18581 6.36046 6.62329 6.67586 6.88514 7.12570 7.62367 7.76605 8.37989 8.67080 9.26083 10.88155 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.028974 B = 0.001965 C = 0.001914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.139465 B =14249.146171 C =14624.499904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.110 4.110 3 C -0.114 4.114 4 C 0.092 3.908 5 N -0.548 5.548 6 C 0.055 3.945 7 C -0.153 4.153 8 C 0.061 3.939 9 O -0.378 6.378 10 C 0.089 3.911 11 H 0.074 0.926 12 C 0.127 3.873 13 N -0.733 5.733 14 C 0.532 3.468 15 O -0.519 6.519 16 C -0.152 4.152 17 S -0.061 6.061 18 C -0.534 4.534 19 H 0.073 0.927 20 C 0.073 3.927 21 N -0.868 5.868 22 Si 0.919 3.081 23 H -0.272 1.272 24 H -0.280 1.280 25 H -0.280 1.280 26 C 0.051 3.949 27 H 0.095 0.905 28 H 0.099 0.901 29 H 0.070 0.930 30 H 0.059 0.941 31 H 0.063 0.937 32 H 0.041 0.959 33 H 0.083 0.917 34 H 0.045 0.955 35 H 0.085 0.915 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.087 0.913 39 H 0.053 0.947 40 H 0.073 0.927 41 H 0.080 0.920 42 H 0.398 0.602 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.268 0.732 46 H 0.036 0.964 47 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.512 16.977 11.042 31.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.110 4.110 3 C -0.170 4.170 4 C -0.035 4.035 5 N -0.272 5.272 6 C -0.072 4.072 7 C -0.191 4.191 8 C -0.015 4.015 9 O -0.297 6.297 10 C 0.030 3.970 11 H 0.092 0.908 12 C 0.002 3.998 13 N -0.387 5.387 14 C 0.319 3.681 15 O -0.394 6.394 16 C -0.303 4.303 17 S 0.166 5.834 18 C -0.683 4.683 19 H 0.091 0.909 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.196 1.196 24 H -0.206 1.206 25 H -0.206 1.206 26 C -0.080 4.080 27 H 0.113 0.887 28 H 0.118 0.882 29 H 0.089 0.911 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.059 0.941 33 H 0.101 0.899 34 H 0.063 0.937 35 H 0.103 0.897 36 H 0.096 0.904 37 H 0.097 0.903 38 H 0.105 0.895 39 H 0.072 0.928 40 H 0.092 0.908 41 H 0.098 0.902 42 H 0.231 0.769 43 H 0.107 0.893 44 H 0.108 0.892 45 H 0.077 0.923 46 H 0.054 0.946 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -23.234 16.116 12.484 30.910 hybrid contribution -0.980 0.437 -2.323 2.559 sum -24.214 16.553 10.161 31.041 Atomic orbital electron populations 1.23735 0.95299 1.01874 1.02670 1.21674 0.95023 0.95751 0.98554 1.20796 0.99951 0.93901 1.02390 1.21148 0.99558 0.93657 0.89101 1.59105 1.16322 1.40584 1.11188 1.21911 0.91746 1.00780 0.92730 1.22006 1.02804 0.98654 0.95668 1.22983 0.93816 0.92062 0.92614 1.87575 1.45673 1.34995 1.61494 1.22166 0.87668 0.95900 0.91251 0.90763 1.21322 0.92249 1.00552 0.85656 1.45845 1.28634 1.54578 1.09670 1.20282 0.79432 0.77403 0.91027 1.90699 1.60286 1.46061 1.42326 1.23522 1.05037 1.05887 0.95860 1.85392 1.23406 1.62365 1.12247 1.22916 1.14595 1.37524 0.93219 0.90882 1.24995 0.95336 0.94610 0.98709 1.70028 1.16210 1.30427 1.33636 0.86116 0.78453 0.78014 0.82901 1.19630 1.20585 1.20584 1.21480 0.96597 0.92235 0.97641 0.88652 0.88232 0.91101 0.92193 0.91790 0.94086 0.89910 0.93676 0.89725 0.90434 0.90295 0.89458 0.92845 0.90839 0.90219 0.76864 0.89284 0.89224 0.92262 0.94620 0.89690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.12 12.03 29.01 0.35 -0.77 16 2 C -0.11 -0.69 4.95 -101.07 -0.50 -1.19 16 3 C -0.11 -0.64 10.03 36.01 0.36 -0.28 16 4 C 0.09 0.63 5.15 -4.97 -0.03 0.61 16 5 N -0.55 -4.27 4.09 -241.02 -0.99 -5.26 16 6 C 0.05 0.40 5.15 -4.48 -0.02 0.38 16 7 C -0.15 -1.03 5.41 -27.47 -0.15 -1.18 16 8 C 0.06 0.48 6.72 37.48 0.25 0.73 16 9 O -0.38 -3.98 9.70 -34.27 -0.33 -4.31 16 10 C 0.09 0.87 2.26 -26.06 -0.06 0.81 16 11 H 0.07 0.70 7.11 -51.93 -0.37 0.33 16 12 C 0.13 1.57 5.30 -4.04 -0.02 1.55 16 13 N -0.73 -10.42 5.50 -60.29 -0.33 -10.75 16 14 C 0.53 10.28 7.85 -10.99 -0.09 10.20 16 15 O -0.52 -12.09 15.86 5.56 0.09 -12.00 16 16 C -0.15 -3.15 6.16 36.01 0.22 -2.93 16 17 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 18 C -0.53 -15.40 9.50 30.94 0.29 -15.11 16 19 H 0.07 2.00 7.80 -52.49 -0.41 1.59 16 20 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 21 N -0.87 -26.40 13.22 55.49 0.73 -25.67 16 22 Si 0.92 21.60 29.55 -169.99 -5.02 16.58 16 23 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 24 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 25 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 26 C 0.05 0.44 4.52 -6.51 -0.03 0.41 16 27 H 0.10 0.52 7.77 -52.49 -0.41 0.11 16 28 H 0.10 0.48 8.04 -52.49 -0.42 0.06 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.29 8.06 -51.93 -0.42 -0.13 16 31 H 0.06 0.36 8.08 -51.93 -0.42 -0.06 16 32 H 0.04 0.29 7.99 -51.93 -0.41 -0.13 16 33 H 0.08 0.54 7.81 -51.93 -0.41 0.13 16 34 H 0.04 0.38 7.64 -51.93 -0.40 -0.02 16 35 H 0.08 0.56 4.99 -51.93 -0.26 0.30 16 36 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 37 H 0.08 0.59 7.39 -51.93 -0.38 0.21 16 38 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 40 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.08 0.97 8.05 -51.93 -0.42 0.56 16 42 H 0.40 4.67 8.47 -40.82 -0.35 4.32 16 43 H 0.09 1.69 8.14 -51.91 -0.42 1.27 16 44 H 0.09 1.73 8.14 -51.92 -0.42 1.31 16 45 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 46 H 0.04 0.34 8.09 -51.93 -0.42 -0.08 16 47 H 0.08 0.68 7.64 -51.93 -0.40 0.28 16 LS Contribution 390.59 15.07 5.89 5.89 Total: -1.00 -34.49 390.59 -9.67 -44.16 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -7.98 Total: 0.04 kcal Atomic # 6 Polarization: -5.28 SS G_CDS: 0.49 Total: -4.79 kcal Atomic # 7 Polarization: -41.09 SS G_CDS: -0.58 Total: -41.67 kcal Atomic # 8 Polarization: -16.07 SS G_CDS: -0.24 Total: -16.31 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -34.49 -9.67 -44.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001149206885.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.634 kcal (2) G-P(sol) polarization free energy of solvation -34.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds