Wall clock time and date at job start Tue Mar 31 2020 16:23:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50702 * 120.00000 * 2 1 4 4 C 1.50696 * 120.00061 * 180.02562 * 2 1 3 5 5 N 1.46905 * 109.47393 * 94.99595 * 4 2 1 6 6 C 1.47642 * 110.99839 * 298.30929 * 5 4 2 7 7 C 1.50889 * 108.76093 * 153.48937 * 6 5 4 8 8 C 1.53622 * 111.71309 * 91.01632 * 7 6 5 9 9 O 1.44084 * 112.54745 * 318.63771 * 8 7 6 10 10 C 1.40627 * 116.73322 * 318.10672 * 9 8 7 11 11 H 1.08998 * 109.58172 * 333.96867 * 10 9 8 12 12 C 1.53006 * 109.52574 * 213.80295 * 10 9 8 13 13 N 1.46500 * 109.47373 * 65.34397 * 12 10 9 14 14 C 1.34769 * 120.00241 * 180.02562 * 13 12 10 15 15 O 1.21282 * 119.99850 * 359.97438 * 14 13 12 16 16 C 1.50702 * 120.00466 * 179.97438 * 14 13 12 17 17 S 1.81000 * 109.47238 * 179.97438 * 16 14 13 18 18 C 1.76205 * 99.99610 * 179.97438 * 17 16 14 19 19 H 1.07998 * 120.00040 * 0.02562 * 18 17 16 20 20 C 1.38796 * 119.99527 * 179.97438 * 18 17 16 21 21 N 1.31625 * 120.00398 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99780 * 180.02562 * 20 18 17 23 23 H 1.48493 * 109.47101 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47171 * 120.00313 * 22 20 18 25 25 H 1.48508 * 109.47025 * 240.00117 * 22 20 18 26 26 C 1.40437 * 110.99955 * 169.99984 * 5 4 2 27 27 H 1.07997 * 119.99825 * 179.97438 * 1 2 3 28 28 H 1.07998 * 119.99550 * 359.97438 * 1 2 3 29 29 H 1.08994 * 109.47079 * 270.00360 * 3 2 1 30 30 H 1.08997 * 109.46975 * 30.00520 * 3 2 1 31 31 H 1.09003 * 109.46984 * 150.00177 * 3 2 1 32 32 H 1.09005 * 109.47117 * 334.99992 * 4 2 1 33 33 H 1.09000 * 109.46915 * 214.99760 * 4 2 1 34 34 H 1.09004 * 109.58277 * 273.27525 * 6 5 4 35 35 H 1.08996 * 109.58558 * 33.70161 * 6 5 4 36 36 H 1.09001 * 109.03263 * 211.58965 * 7 6 5 37 37 H 1.09002 * 109.03854 * 330.43774 * 7 6 5 38 38 H 1.09005 * 108.86327 * 79.42918 * 8 7 6 39 39 H 1.08997 * 108.86695 * 197.84429 * 8 7 6 40 40 H 1.09004 * 109.47107 * 305.34350 * 12 10 9 41 41 H 1.09000 * 109.46866 * 185.34459 * 12 10 9 42 42 H 0.97003 * 119.99532 * 359.97438 * 13 12 10 43 43 H 1.09004 * 109.46923 * 59.99646 * 16 14 13 44 44 H 1.09004 * 109.46818 * 300.00196 * 16 14 13 45 45 H 0.97006 * 120.00587 * 179.97438 * 21 20 18 46 46 H 1.09002 * 109.04084 * 67.73592 * 26 5 4 47 47 H 1.08994 * 109.03969 * 308.87100 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 2.0636 -1.3051 -0.0006 5 7 2.4129 -1.6683 -1.3805 6 6 1.2001 -1.8602 -2.2003 7 6 1.5405 -1.5808 -3.6434 8 6 1.9872 -2.8535 -4.3787 9 8 2.8548 -3.6788 -3.5773 10 6 3.8425 -3.0163 -2.8269 11 1 4.0898 -2.0684 -3.3048 12 6 5.0956 -3.8905 -2.7461 13 7 5.6728 -4.0416 -4.0841 14 6 6.7893 -4.7762 -4.2574 15 8 7.3165 -5.3119 -3.3055 16 6 7.3828 -4.9322 -5.6338 17 16 8.8652 -5.9662 -5.5381 18 6 9.3376 -5.9815 -7.2356 19 1 8.7489 -5.4448 -7.9648 20 6 10.4668 -6.6826 -7.6353 21 7 11.1846 -7.3363 -6.7465 22 14 10.9680 -6.6983 -9.4348 23 1 10.0021 -5.8933 -10.2247 24 1 12.3279 -6.1183 -9.5749 25 1 10.9722 -8.0965 -9.9353 26 6 3.3052 -2.7524 -1.4050 27 1 -0.5400 -0.9353 -0.0004 28 1 -0.5399 0.9353 0.0004 29 1 2.2452 1.6198 -1.0276 30 1 1.4745 2.0647 0.5139 31 1 3.0160 1.1747 0.5138 32 1 1.4386 -2.0856 0.4334 33 1 2.9743 -1.1990 0.5889 34 1 0.8498 -2.8875 -2.0996 35 1 0.4222 -1.1726 -1.8684 36 1 0.6625 -1.1714 -4.1430 37 1 2.3451 -0.8464 -3.6832 38 1 1.1040 -3.4313 -4.6514 39 1 2.5142 -2.5681 -5.2891 40 1 4.8296 -4.8714 -2.3523 41 1 5.8250 -3.4198 -2.0868 42 1 5.2509 -3.6135 -4.8455 43 1 7.6491 -3.9514 -6.0279 44 1 6.6530 -5.4027 -6.2929 45 1 11.9736 -7.8266 -7.0259 46 1 2.7906 -3.6446 -1.0481 47 1 4.1435 -2.5381 -0.7422 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001149206885.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:23:43 Heat of formation + Delta-G solvation = -83.211281 kcal Electronic energy + Delta-G solvation = -25573.890896 eV Core-core repulsion = 21882.466243 eV Total energy + Delta-G solvation = -3691.424654 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.21513 -40.36777 -38.35956 -35.96292 -35.46060 -34.58177 -33.80299 -31.63114 -30.08795 -28.28109 -27.71557 -27.46921 -26.98899 -24.38859 -22.30694 -21.56129 -21.49195 -19.86204 -19.39733 -18.16597 -17.93290 -17.66700 -16.88628 -16.81884 -16.51625 -16.46159 -16.19794 -15.67697 -15.55388 -15.38949 -15.13011 -14.67286 -14.46788 -14.36258 -14.02826 -13.86237 -13.73951 -13.42248 -13.16778 -13.15576 -12.90607 -12.71277 -12.60033 -12.53895 -12.37165 -12.21923 -12.07389 -11.74057 -11.64838 -11.40142 -11.15487 -11.01569 -10.52560 -10.26992 -10.14418 -9.95701 -9.26161 -8.66280 -8.34322 -6.12377 1.22927 1.27971 1.41900 1.47284 1.58607 1.61169 2.23254 2.28423 2.62123 2.99788 3.04455 3.32524 3.67019 3.78592 3.88605 3.94566 4.02533 4.05098 4.08945 4.13240 4.28896 4.32125 4.47765 4.50931 4.54078 4.55846 4.62679 4.65530 4.71558 4.78932 4.81041 4.90558 4.93691 4.98676 5.04616 5.10895 5.19579 5.25712 5.39058 5.42707 5.69265 5.88553 6.08343 6.20611 6.23861 6.42468 6.47649 7.06971 7.22365 8.75186 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.028974 B = 0.001965 C = 0.001914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.139465 B =14249.146171 C =14624.499904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.120 4.120 3 C -0.112 4.112 4 C 0.091 3.909 5 N -0.549 5.549 6 C 0.056 3.944 7 C -0.147 4.147 8 C 0.056 3.944 9 O -0.399 6.399 10 C 0.102 3.898 11 H 0.084 0.916 12 C 0.126 3.874 13 N -0.708 5.708 14 C 0.534 3.466 15 O -0.566 6.566 16 C -0.129 4.129 17 S -0.151 6.151 18 C -0.546 4.546 19 H 0.083 0.917 20 C 0.012 3.988 21 N -0.911 5.911 22 Si 1.000 3.000 23 H -0.256 1.256 24 H -0.273 1.273 25 H -0.274 1.274 26 C 0.056 3.944 27 H 0.097 0.903 28 H 0.109 0.891 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.062 0.938 32 H 0.038 0.962 33 H 0.084 0.916 34 H 0.033 0.967 35 H 0.092 0.908 36 H 0.096 0.904 37 H 0.074 0.926 38 H 0.095 0.905 39 H 0.062 0.938 40 H 0.058 0.942 41 H 0.083 0.917 42 H 0.414 0.586 43 H 0.111 0.889 44 H 0.108 0.892 45 H 0.271 0.729 46 H 0.024 0.976 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.265 18.877 9.565 33.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.121 4.121 3 C -0.168 4.168 4 C -0.035 4.035 5 N -0.273 5.273 6 C -0.071 4.071 7 C -0.185 4.185 8 C -0.019 4.019 9 O -0.319 6.319 10 C 0.043 3.957 11 H 0.102 0.898 12 C 0.002 3.998 13 N -0.361 5.361 14 C 0.320 3.680 15 O -0.444 6.444 16 C -0.280 4.280 17 S 0.076 5.924 18 C -0.693 4.693 19 H 0.101 0.899 20 C -0.193 4.193 21 N -0.548 5.548 22 Si 0.822 3.178 23 H -0.180 1.180 24 H -0.199 1.199 25 H -0.200 1.200 26 C -0.074 4.074 27 H 0.115 0.885 28 H 0.127 0.873 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.056 0.944 33 H 0.103 0.897 34 H 0.051 0.949 35 H 0.111 0.889 36 H 0.114 0.886 37 H 0.092 0.908 38 H 0.113 0.887 39 H 0.080 0.920 40 H 0.076 0.924 41 H 0.101 0.899 42 H 0.250 0.750 43 H 0.129 0.871 44 H 0.126 0.874 45 H 0.080 0.920 46 H 0.042 0.958 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -25.046 18.059 10.999 32.778 hybrid contribution -0.585 -0.102 -1.792 1.888 sum -25.631 17.957 9.207 32.622 Atomic orbital electron populations 1.23853 0.95134 1.02436 1.01589 1.21700 0.95290 0.95595 0.99495 1.20780 0.99993 0.93817 1.02236 1.21173 0.99762 0.94014 0.88567 1.59140 1.16493 1.39853 1.11845 1.21936 0.91728 1.00247 0.93166 1.21965 1.03389 0.97918 0.95214 1.23164 0.93773 0.92407 0.92597 1.87545 1.46091 1.36319 1.61944 1.21983 0.86503 0.95187 0.92027 0.89836 1.21446 0.93577 1.00455 0.84327 1.45598 1.26720 1.52548 1.11262 1.20055 0.80386 0.77715 0.89824 1.90689 1.62011 1.48376 1.43351 1.23360 1.01836 1.05346 0.97431 1.85575 1.28226 1.65077 1.13494 1.23243 1.15110 1.37802 0.93187 0.89885 1.26144 0.95154 0.93851 1.04106 1.70190 1.16861 1.31400 1.36334 0.84890 0.78337 0.78379 0.76229 1.18008 1.19872 1.19961 1.21385 0.96958 0.92153 0.96940 0.88519 0.87260 0.91472 0.91357 0.91943 0.94381 0.89729 0.94888 0.88938 0.88569 0.90775 0.88697 0.91992 0.92385 0.89914 0.75000 0.87075 0.87408 0.91988 0.95836 0.89109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.83 12.03 67.77 0.82 -1.01 16 2 C -0.12 -1.33 4.95 -16.49 -0.08 -1.41 16 3 C -0.11 -1.10 10.03 71.24 0.71 -0.38 16 4 C 0.09 1.15 5.15 85.55 0.44 1.60 16 5 N -0.55 -7.83 4.09 -916.46 -3.75 -11.59 16 6 C 0.06 0.72 5.15 85.47 0.44 1.16 16 7 C -0.15 -1.63 5.41 30.12 0.16 -1.47 16 8 C 0.06 0.75 6.72 72.19 0.48 1.24 16 9 O -0.40 -7.81 9.70 -145.56 -1.41 -9.22 16 10 C 0.10 1.84 2.26 31.03 0.07 1.91 16 11 H 0.08 1.38 7.11 -2.39 -0.02 1.36 16 12 C 0.13 3.02 5.30 86.38 0.46 3.48 16 13 N -0.71 -19.14 5.50 -463.05 -2.55 -21.68 16 14 C 0.53 20.41 7.85 87.66 0.69 21.09 16 15 O -0.57 -26.89 15.86 -3.04 -0.05 -26.94 16 16 C -0.13 -5.21 6.16 71.24 0.44 -4.77 16 17 S -0.15 -8.51 20.57 -56.49 -1.16 -9.67 16 18 C -0.55 -31.47 9.50 67.95 0.65 -30.82 16 19 H 0.08 4.45 7.80 -2.91 -0.02 4.42 16 20 C 0.01 0.69 5.49 84.86 0.47 1.16 16 21 N -0.91 -56.43 13.22 21.65 0.29 -56.15 16 22 Si 1.00 43.91 29.55 68.60 2.03 45.93 16 23 H -0.26 -10.50 7.11 99.48 0.71 -9.80 16 24 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 25 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 26 C 0.06 0.92 4.52 87.91 0.40 1.32 16 27 H 0.10 0.89 7.77 -2.91 -0.02 0.87 16 28 H 0.11 0.83 8.04 -2.91 -0.02 0.80 16 29 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.07 0.54 8.06 -2.39 -0.02 0.52 16 31 H 0.06 0.62 8.08 -2.39 -0.02 0.60 16 32 H 0.04 0.50 7.99 -2.38 -0.02 0.48 16 33 H 0.08 1.02 7.81 -2.39 -0.02 1.00 16 34 H 0.03 0.52 7.64 -2.38 -0.02 0.50 16 35 H 0.09 1.05 4.99 -2.39 -0.01 1.04 16 36 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.07 0.93 7.39 -2.39 -0.02 0.91 16 38 H 0.09 1.13 8.14 -2.38 -0.02 1.11 16 39 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 40 H 0.06 1.61 8.14 -2.38 -0.02 1.59 16 41 H 0.08 1.98 8.05 -2.39 -0.02 1.96 16 42 H 0.41 8.69 8.47 -92.71 -0.79 7.91 16 43 H 0.11 4.02 8.14 -2.39 -0.02 4.00 16 44 H 0.11 3.98 8.14 -2.39 -0.02 3.96 16 45 H 0.27 15.51 8.31 -92.70 -0.77 14.74 16 46 H 0.02 0.45 8.09 -2.39 -0.02 0.43 16 47 H 0.09 1.37 7.64 -2.39 -0.02 1.35 16 Total: -1.00 -75.96 390.59 -0.31 -76.27 By element: Atomic # 1 Polarization: 19.80 SS G_CDS: 0.16 Total: 19.96 kcal Atomic # 6 Polarization: -13.06 SS G_CDS: 6.14 Total: -6.92 kcal Atomic # 7 Polarization: -83.40 SS G_CDS: -6.01 Total: -89.42 kcal Atomic # 8 Polarization: -34.70 SS G_CDS: -1.46 Total: -36.16 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.93 kcal Atomic # 16 Polarization: -8.51 SS G_CDS: -1.16 Total: -9.67 kcal Total: -75.96 -0.31 -76.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001149206885.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.946 kcal (2) G-P(sol) polarization free energy of solvation -75.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds