Wall clock time and date at job start Tue Mar 31 2020 16:23:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50702 * 120.00060 * 2 1 4 4 C 1.50704 * 119.99747 * 179.97438 * 2 1 3 5 5 N 1.46900 * 109.46967 * 94.99912 * 4 2 1 6 6 C 1.48017 * 111.00059 * 293.95547 * 5 4 2 7 7 C 1.50992 * 113.13028 * 192.36390 * 6 5 4 8 8 C 1.54704 * 109.07924 * 92.03959 * 7 6 5 9 9 O 1.36616 * 110.79488 * 286.65532 * 8 7 6 10 10 C 1.43456 * 117.83949 * 61.03868 * 9 8 7 11 11 H 1.09000 * 109.83533 * 37.49633 * 10 9 8 12 12 C 1.52996 * 109.83924 * 158.40363 * 10 9 8 13 13 N 1.46498 * 109.47059 * 299.08742 * 12 10 9 14 14 C 1.34777 * 119.99828 * 179.72339 * 13 12 10 15 15 O 1.21283 * 120.00222 * 0.28168 * 14 13 12 16 16 C 1.50703 * 120.00290 * 180.27728 * 14 13 12 17 17 S 1.81000 * 109.47389 * 180.02562 * 16 14 13 18 18 C 1.76198 * 99.99715 * 179.97438 * 17 16 14 19 19 H 1.08001 * 120.00516 * 0.02562 * 18 17 16 20 20 C 1.38803 * 119.99710 * 179.97438 * 18 17 16 21 21 N 1.31626 * 120.00053 * 180.02562 * 20 18 17 22 22 Si 1.86798 * 120.00174 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.47356 * 89.99148 * 22 20 18 24 24 H 1.48497 * 109.47342 * 209.99750 * 22 20 18 25 25 H 1.48505 * 109.46847 * 329.99403 * 22 20 18 26 26 C 1.47312 * 110.94418 * 166.77495 * 5 4 2 27 27 H 1.08001 * 119.99721 * 0.02562 * 1 2 3 28 28 H 1.07994 * 120.00318 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46913 * 180.02562 * 3 2 1 30 30 H 1.08993 * 109.46975 * 299.99705 * 3 2 1 31 31 H 1.08993 * 109.47411 * 60.00084 * 3 2 1 32 32 H 1.08993 * 109.47278 * 334.99912 * 4 2 1 33 33 H 1.09004 * 109.46970 * 214.99941 * 4 2 1 34 34 H 1.08998 * 108.75616 * 71.42106 * 6 5 4 35 35 H 1.09003 * 108.75493 * 313.30259 * 6 5 4 36 36 H 1.09000 * 109.53006 * 332.15686 * 7 6 5 37 37 H 1.08997 * 109.53537 * 211.92356 * 7 6 5 38 38 H 1.08999 * 109.21751 * 166.31935 * 8 7 6 39 39 H 1.09002 * 109.21475 * 46.98924 * 8 7 6 40 40 H 1.09004 * 109.47066 * 179.09010 * 12 10 9 41 41 H 1.08994 * 109.46974 * 59.09157 * 12 10 9 42 42 H 0.97001 * 120.00384 * 0.02562 * 13 12 10 43 43 H 1.08998 * 109.46954 * 300.00581 * 16 14 13 44 44 H 1.09002 * 109.46946 * 59.99717 * 16 14 13 45 45 H 0.97000 * 120.00636 * 180.02562 * 21 20 18 46 46 H 1.09002 * 109.08085 * 324.40039 * 26 5 4 47 47 H 1.08998 * 108.99428 * 205.50017 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0634 -1.3052 0.0006 5 7 2.4128 -1.6695 -1.3790 6 6 1.1990 -1.9639 -2.1734 7 6 1.5022 -2.6245 -3.4969 8 6 1.4567 -4.1604 -3.3176 9 8 2.5533 -4.6014 -2.6324 10 6 2.7509 -4.1127 -1.2983 11 1 1.7901 -4.0215 -0.7917 12 6 3.6576 -5.0708 -0.5233 13 7 3.0234 -6.3892 -0.4473 14 6 3.6466 -7.4011 0.1886 15 8 4.7300 -7.2189 0.7023 16 6 2.9971 -8.7591 0.2613 17 16 4.0724 -9.8941 1.1732 18 6 3.0960 -11.3594 1.1077 19 1 2.1414 -11.3502 0.6028 20 6 3.5543 -12.5259 1.7043 21 7 2.8252 -13.6207 1.6550 22 14 5.2058 -12.5421 2.5771 23 1 5.0147 -12.1813 4.0049 24 1 5.8011 -13.8994 2.4849 25 1 6.1145 -11.5584 1.9354 26 6 3.4072 -2.7561 -1.4009 27 1 -0.5400 0.9353 -0.0004 28 1 -0.5400 -0.9352 0.0004 29 1 3.1351 1.1059 -0.0005 30 1 1.8002 1.8766 -0.8900 31 1 1.8003 1.8767 0.8899 32 1 1.4385 -2.0853 0.4352 33 1 2.9742 -1.1987 0.5900 34 1 0.6682 -1.0306 -2.3611 35 1 0.5517 -2.6218 -1.5936 36 1 2.4948 -2.3260 -3.8342 37 1 0.7589 -2.3214 -4.2343 38 1 1.4316 -4.6355 -4.2982 39 1 0.5565 -4.4307 -2.7656 40 1 3.8168 -4.6857 0.4840 41 1 4.6162 -5.1576 -1.0348 42 1 2.1571 -6.5352 -0.8584 43 1 2.0387 -8.6764 0.7739 44 1 2.8379 -9.1402 -0.7474 45 1 3.1453 -14.4358 2.0722 46 1 4.0932 -2.6283 -0.5636 47 1 3.9705 -2.7027 -2.3325 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001149206886.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:23:47 Heat of formation + Delta-G solvation = -58.277100 kcal Electronic energy + Delta-G solvation = -25775.036431 eV Core-core repulsion = 22084.693005 eV Total energy + Delta-G solvation = -3690.343426 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.78931 -39.11690 -37.70510 -35.11685 -34.86428 -32.87847 -32.43114 -30.53355 -29.08332 -27.73218 -26.76671 -26.32067 -25.58642 -23.83358 -22.02855 -20.85733 -20.15504 -18.97559 -17.96164 -17.23999 -16.98412 -16.76826 -16.29259 -15.48667 -15.45893 -15.24786 -15.13593 -14.93748 -14.76958 -14.29637 -13.82667 -13.47564 -13.41766 -13.36133 -13.17624 -13.06335 -12.78348 -12.74212 -12.25146 -12.09423 -12.04019 -11.88634 -11.65687 -11.53985 -11.25906 -11.08264 -11.00262 -10.80467 -10.60161 -10.04824 -9.85594 -9.58099 -9.48472 -9.02139 -8.96497 -8.63115 -8.49252 -6.90915 -6.28251 -3.99851 1.73446 2.76198 2.97931 3.21905 3.30112 3.34193 3.47762 3.51418 3.66447 4.23556 4.30544 4.33986 4.41377 4.46713 4.54965 4.58995 4.72417 4.80163 4.91072 4.94510 4.97445 5.10734 5.11661 5.15585 5.21495 5.26010 5.28106 5.33411 5.38651 5.48104 5.52274 5.56186 5.61018 5.64829 5.73848 5.77087 5.79442 6.02807 6.15459 6.36144 6.48910 6.58950 6.59921 7.17513 7.60791 7.94790 8.42340 8.49049 9.17891 10.80952 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.022744 B = 0.002167 C = 0.002096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.812151 B =12917.179338 C =13354.683462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.111 4.111 3 C -0.113 4.113 4 C 0.085 3.915 5 N -0.536 5.536 6 C 0.055 3.945 7 C -0.167 4.167 8 C 0.071 3.929 9 O -0.371 6.371 10 C 0.057 3.943 11 H 0.066 0.934 12 C 0.133 3.867 13 N -0.732 5.732 14 C 0.531 3.469 15 O -0.521 6.521 16 C -0.123 4.123 17 S -0.141 6.141 18 C -0.521 4.521 19 H 0.088 0.912 20 C 0.095 3.905 21 N -0.880 5.880 22 Si 0.857 3.143 23 H -0.267 1.267 24 H -0.274 1.274 25 H -0.235 1.235 26 C 0.032 3.968 27 H 0.099 0.901 28 H 0.094 0.906 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.040 0.960 33 H 0.084 0.916 34 H 0.078 0.922 35 H 0.032 0.968 36 H 0.084 0.916 37 H 0.080 0.920 38 H 0.098 0.902 39 H 0.037 0.963 40 H 0.081 0.919 41 H 0.078 0.922 42 H 0.401 0.599 43 H 0.096 0.904 44 H 0.098 0.902 45 H 0.271 0.729 46 H 0.086 0.914 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.592 29.725 -8.769 31.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.112 4.112 3 C -0.170 4.170 4 C -0.042 4.042 5 N -0.260 5.260 6 C -0.072 4.072 7 C -0.205 4.205 8 C -0.007 4.007 9 O -0.289 6.289 10 C -0.002 4.002 11 H 0.083 0.917 12 C 0.008 3.992 13 N -0.386 5.386 14 C 0.317 3.683 15 O -0.396 6.396 16 C -0.274 4.274 17 S 0.085 5.915 18 C -0.669 4.669 19 H 0.106 0.894 20 C -0.114 4.114 21 N -0.517 5.517 22 Si 0.682 3.318 23 H -0.192 1.192 24 H -0.199 1.199 25 H -0.159 1.159 26 C -0.096 4.096 27 H 0.117 0.883 28 H 0.112 0.888 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.058 0.942 33 H 0.103 0.897 34 H 0.096 0.904 35 H 0.050 0.950 36 H 0.103 0.897 37 H 0.099 0.901 38 H 0.116 0.884 39 H 0.055 0.945 40 H 0.099 0.901 41 H 0.096 0.904 42 H 0.234 0.766 43 H 0.114 0.886 44 H 0.116 0.884 45 H 0.080 0.920 46 H 0.104 0.896 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -3.450 30.114 -8.155 31.388 hybrid contribution -1.914 -1.019 0.038 2.168 sum -5.363 29.094 -8.117 30.678 Atomic orbital electron populations 1.23703 0.95351 1.01846 1.02491 1.21644 0.94994 0.95628 0.98901 1.20770 1.00377 0.94211 1.01631 1.21287 0.99700 0.93894 0.89341 1.62023 1.13361 1.38957 1.11638 1.21959 0.91174 1.00289 0.93801 1.22418 1.04098 0.96758 0.97252 1.21935 0.88467 0.93333 0.96960 1.86529 1.46132 1.69756 1.26503 1.22824 0.99160 0.94551 0.83678 0.91652 1.21322 0.96442 0.82249 0.99225 1.45827 1.23789 1.10219 1.58761 1.20274 0.85343 0.85432 0.77227 1.90699 1.20544 1.83181 1.45131 1.23270 1.03749 0.94809 1.05575 1.84775 1.28742 1.06205 1.71800 1.22320 1.07826 0.94463 1.42264 0.89400 1.24720 0.97548 0.94282 0.94821 1.69936 1.37714 1.00870 1.43188 0.86727 0.84593 0.79125 0.81361 1.19227 1.19946 1.15893 1.22576 0.95025 0.87274 1.04739 0.88296 0.88801 0.91687 0.91636 0.91863 0.94159 0.89720 0.90357 0.94974 0.89722 0.90142 0.88406 0.94526 0.90132 0.90369 0.76554 0.88603 0.88407 0.91952 0.89553 0.88740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.24 12.84 29.01 0.37 -0.87 16 2 C -0.11 -0.75 4.98 -101.06 -0.50 -1.25 16 3 C -0.11 -0.66 10.05 36.01 0.36 -0.30 16 4 C 0.08 0.60 4.91 -4.97 -0.02 0.58 16 5 N -0.54 -3.97 4.74 -237.24 -1.13 -5.10 16 6 C 0.05 0.38 4.27 -4.22 -0.02 0.36 16 7 C -0.17 -1.08 5.70 -26.84 -0.15 -1.23 16 8 C 0.07 0.52 6.43 38.05 0.24 0.76 16 9 O -0.37 -3.53 9.42 -21.74 -0.20 -3.73 16 10 C 0.06 0.49 2.30 -27.72 -0.06 0.42 16 11 H 0.07 0.55 6.39 -51.93 -0.33 0.22 16 12 C 0.13 1.47 5.16 -4.04 -0.02 1.45 16 13 N -0.73 -9.62 5.46 -60.30 -0.33 -9.95 16 14 C 0.53 9.56 7.85 -10.98 -0.09 9.47 16 15 O -0.52 -11.29 15.86 5.55 0.09 -11.20 16 16 C -0.12 -2.42 6.16 36.01 0.22 -2.20 16 17 S -0.14 -3.62 18.55 -107.50 -1.99 -5.62 16 18 C -0.52 -15.12 10.04 30.94 0.31 -14.81 16 19 H 0.09 2.65 8.03 -52.49 -0.42 2.23 16 20 C 0.09 2.79 5.50 -17.43 -0.10 2.70 16 21 N -0.88 -26.68 13.97 55.49 0.78 -25.91 16 22 Si 0.86 21.91 27.74 -169.99 -4.72 17.20 16 23 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 24 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 25 H -0.23 -6.00 6.74 56.52 0.38 -5.62 16 26 C 0.03 0.25 4.84 -4.58 -0.02 0.22 16 27 H 0.10 0.54 8.05 -52.49 -0.42 0.12 16 28 H 0.09 0.59 7.99 -52.49 -0.42 0.17 16 29 H 0.06 0.39 8.00 -51.93 -0.42 -0.03 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.04 0.30 7.53 -51.93 -0.39 -0.09 16 33 H 0.08 0.57 7.70 -51.93 -0.40 0.17 16 34 H 0.08 0.55 7.13 -51.93 -0.37 0.18 16 35 H 0.03 0.23 6.31 -51.93 -0.33 -0.09 16 36 H 0.08 0.63 7.24 -51.93 -0.38 0.26 16 37 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.04 0.26 7.72 -51.93 -0.40 -0.14 16 40 H 0.08 0.88 8.12 -51.93 -0.42 0.46 16 41 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.40 4.41 8.38 -40.82 -0.34 4.07 16 43 H 0.10 1.74 8.14 -51.92 -0.42 1.32 16 44 H 0.10 1.80 8.14 -51.92 -0.42 1.38 16 45 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 46 H 0.09 0.60 7.16 -51.93 -0.37 0.23 16 47 H 0.09 0.78 7.25 -51.93 -0.38 0.41 16 LS Contribution 386.04 15.07 5.82 5.82 Total: -1.00 -33.70 386.04 -9.07 -42.76 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -7.90 Total: 0.41 kcal Atomic # 6 Polarization: -5.21 SS G_CDS: 0.52 Total: -4.69 kcal Atomic # 7 Polarization: -40.27 SS G_CDS: -0.68 Total: -40.95 kcal Atomic # 8 Polarization: -14.81 SS G_CDS: -0.12 Total: -14.93 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.72 Total: 17.20 kcal Atomic # 16 Polarization: -3.62 SS G_CDS: -1.99 Total: -5.62 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.70 -9.07 -42.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001149206886.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.514 kcal (2) G-P(sol) polarization free energy of solvation -33.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds