Wall clock time and date at job start Tue Mar 31 2020 16:23:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50702 * 120.00060 * 2 1 4 4 C 1.50704 * 119.99747 * 179.97438 * 2 1 3 5 5 N 1.46900 * 109.46967 * 94.99912 * 4 2 1 6 6 C 1.48017 * 111.00059 * 293.95547 * 5 4 2 7 7 C 1.50992 * 113.13028 * 192.36390 * 6 5 4 8 8 C 1.54704 * 109.07924 * 92.03959 * 7 6 5 9 9 O 1.36616 * 110.79488 * 286.65532 * 8 7 6 10 10 C 1.43456 * 117.83949 * 61.03868 * 9 8 7 11 11 H 1.09000 * 109.83533 * 37.49633 * 10 9 8 12 12 C 1.52996 * 109.83924 * 158.40363 * 10 9 8 13 13 N 1.46498 * 109.47059 * 299.08742 * 12 10 9 14 14 C 1.34777 * 119.99828 * 179.72339 * 13 12 10 15 15 O 1.21283 * 120.00222 * 0.28168 * 14 13 12 16 16 C 1.50703 * 120.00290 * 180.27728 * 14 13 12 17 17 S 1.81000 * 109.47389 * 180.02562 * 16 14 13 18 18 C 1.76198 * 99.99715 * 179.97438 * 17 16 14 19 19 H 1.08001 * 120.00516 * 0.02562 * 18 17 16 20 20 C 1.38803 * 119.99710 * 179.97438 * 18 17 16 21 21 N 1.31626 * 120.00053 * 180.02562 * 20 18 17 22 22 Si 1.86798 * 120.00174 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.47356 * 89.99148 * 22 20 18 24 24 H 1.48497 * 109.47342 * 209.99750 * 22 20 18 25 25 H 1.48505 * 109.46847 * 329.99403 * 22 20 18 26 26 C 1.47312 * 110.94418 * 166.77495 * 5 4 2 27 27 H 1.08001 * 119.99721 * 0.02562 * 1 2 3 28 28 H 1.07994 * 120.00318 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46913 * 180.02562 * 3 2 1 30 30 H 1.08993 * 109.46975 * 299.99705 * 3 2 1 31 31 H 1.08993 * 109.47411 * 60.00084 * 3 2 1 32 32 H 1.08993 * 109.47278 * 334.99912 * 4 2 1 33 33 H 1.09004 * 109.46970 * 214.99941 * 4 2 1 34 34 H 1.08998 * 108.75616 * 71.42106 * 6 5 4 35 35 H 1.09003 * 108.75493 * 313.30259 * 6 5 4 36 36 H 1.09000 * 109.53006 * 332.15686 * 7 6 5 37 37 H 1.08997 * 109.53537 * 211.92356 * 7 6 5 38 38 H 1.08999 * 109.21751 * 166.31935 * 8 7 6 39 39 H 1.09002 * 109.21475 * 46.98924 * 8 7 6 40 40 H 1.09004 * 109.47066 * 179.09010 * 12 10 9 41 41 H 1.08994 * 109.46974 * 59.09157 * 12 10 9 42 42 H 0.97001 * 120.00384 * 0.02562 * 13 12 10 43 43 H 1.08998 * 109.46954 * 300.00581 * 16 14 13 44 44 H 1.09002 * 109.46946 * 59.99717 * 16 14 13 45 45 H 0.97000 * 120.00636 * 180.02562 * 21 20 18 46 46 H 1.09002 * 109.08085 * 324.40039 * 26 5 4 47 47 H 1.08998 * 108.99428 * 205.50017 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0634 -1.3052 0.0006 5 7 2.4128 -1.6695 -1.3790 6 6 1.1990 -1.9639 -2.1734 7 6 1.5022 -2.6245 -3.4969 8 6 1.4567 -4.1604 -3.3176 9 8 2.5533 -4.6014 -2.6324 10 6 2.7509 -4.1127 -1.2983 11 1 1.7901 -4.0215 -0.7917 12 6 3.6576 -5.0708 -0.5233 13 7 3.0234 -6.3892 -0.4473 14 6 3.6466 -7.4011 0.1886 15 8 4.7300 -7.2189 0.7023 16 6 2.9971 -8.7591 0.2613 17 16 4.0724 -9.8941 1.1732 18 6 3.0960 -11.3594 1.1077 19 1 2.1414 -11.3502 0.6028 20 6 3.5543 -12.5259 1.7043 21 7 2.8252 -13.6207 1.6550 22 14 5.2058 -12.5421 2.5771 23 1 5.0147 -12.1813 4.0049 24 1 5.8011 -13.8994 2.4849 25 1 6.1145 -11.5584 1.9354 26 6 3.4072 -2.7561 -1.4009 27 1 -0.5400 0.9353 -0.0004 28 1 -0.5400 -0.9352 0.0004 29 1 3.1351 1.1059 -0.0005 30 1 1.8002 1.8766 -0.8900 31 1 1.8003 1.8767 0.8899 32 1 1.4385 -2.0853 0.4352 33 1 2.9742 -1.1987 0.5900 34 1 0.6682 -1.0306 -2.3611 35 1 0.5517 -2.6218 -1.5936 36 1 2.4948 -2.3260 -3.8342 37 1 0.7589 -2.3214 -4.2343 38 1 1.4316 -4.6355 -4.2982 39 1 0.5565 -4.4307 -2.7656 40 1 3.8168 -4.6857 0.4840 41 1 4.6162 -5.1576 -1.0348 42 1 2.1571 -6.5352 -0.8584 43 1 2.0387 -8.6764 0.7739 44 1 2.8379 -9.1402 -0.7474 45 1 3.1453 -14.4358 2.0722 46 1 4.0932 -2.6283 -0.5636 47 1 3.9705 -2.7027 -2.3325 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001149206886.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:23:46 Heat of formation + Delta-G solvation = -82.171317 kcal Electronic energy + Delta-G solvation = -25776.072562 eV Core-core repulsion = 22084.693005 eV Total energy + Delta-G solvation = -3691.379557 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.49593 -40.45406 -38.29497 -36.17761 -35.42826 -34.67729 -33.71729 -31.60340 -30.17007 -28.23052 -27.88073 -27.33225 -27.03772 -24.57921 -22.70191 -21.95078 -21.04022 -19.91204 -19.47747 -18.08679 -17.90640 -17.81342 -17.22406 -17.11482 -16.57514 -16.43027 -16.08007 -15.83781 -15.61085 -15.31479 -14.93192 -14.86742 -14.68018 -14.43881 -13.92987 -13.84490 -13.72399 -13.48008 -13.38518 -13.33282 -13.00839 -12.83807 -12.68100 -12.58141 -12.50180 -12.22653 -12.12618 -11.86985 -11.63879 -11.40822 -11.17412 -11.08512 -10.66095 -10.54852 -10.19502 -9.99802 -9.22530 -9.00271 -8.51867 -6.22864 0.97916 1.24033 1.31372 1.46512 1.53702 1.55637 2.18262 2.25515 2.55673 2.70851 2.86194 2.91325 3.57462 3.68504 3.78955 3.86918 3.89084 3.96233 4.03977 4.17504 4.20399 4.35192 4.37098 4.44198 4.45220 4.52831 4.58494 4.62799 4.67818 4.69563 4.78971 4.89373 4.96552 5.02189 5.05651 5.11245 5.17484 5.22759 5.33296 5.67236 5.70276 5.85180 6.02296 6.05856 6.10928 6.40266 6.54115 6.93066 7.14261 8.60470 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.022744 B = 0.002167 C = 0.002096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.812151 B =12917.179338 C =13354.683462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.121 4.121 3 C -0.111 4.111 4 C 0.084 3.916 5 N -0.538 5.538 6 C 0.056 3.944 7 C -0.160 4.160 8 C 0.066 3.934 9 O -0.388 6.388 10 C 0.069 3.931 11 H 0.071 0.929 12 C 0.131 3.869 13 N -0.709 5.709 14 C 0.536 3.464 15 O -0.561 6.561 16 C -0.111 4.111 17 S -0.173 6.173 18 C -0.530 4.530 19 H 0.062 0.938 20 C 0.044 3.956 21 N -0.916 5.916 22 Si 0.915 3.085 23 H -0.262 1.262 24 H -0.259 1.259 25 H -0.237 1.237 26 C 0.037 3.963 27 H 0.107 0.893 28 H 0.093 0.907 29 H 0.061 0.939 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.036 0.964 33 H 0.087 0.913 34 H 0.078 0.922 35 H 0.030 0.970 36 H 0.075 0.925 37 H 0.096 0.904 38 H 0.106 0.894 39 H 0.042 0.958 40 H 0.086 0.914 41 H 0.069 0.931 42 H 0.414 0.586 43 H 0.113 0.887 44 H 0.111 0.889 45 H 0.277 0.723 46 H 0.093 0.907 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.759 31.479 -9.116 33.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.122 4.122 3 C -0.168 4.168 4 C -0.043 4.043 5 N -0.262 5.262 6 C -0.071 4.071 7 C -0.198 4.198 8 C -0.011 4.011 9 O -0.307 6.307 10 C 0.010 3.990 11 H 0.089 0.911 12 C 0.007 3.993 13 N -0.362 5.362 14 C 0.322 3.678 15 O -0.440 6.440 16 C -0.262 4.262 17 S 0.053 5.947 18 C -0.677 4.677 19 H 0.080 0.920 20 C -0.161 4.161 21 N -0.554 5.554 22 Si 0.737 3.263 23 H -0.186 1.186 24 H -0.183 1.183 25 H -0.161 1.161 26 C -0.091 4.091 27 H 0.125 0.875 28 H 0.111 0.889 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.055 0.945 33 H 0.105 0.895 34 H 0.097 0.903 35 H 0.049 0.951 36 H 0.093 0.907 37 H 0.114 0.886 38 H 0.124 0.876 39 H 0.060 0.940 40 H 0.104 0.896 41 H 0.087 0.913 42 H 0.250 0.750 43 H 0.131 0.869 44 H 0.130 0.870 45 H 0.086 0.914 46 H 0.111 0.889 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -3.662 31.896 -8.535 33.221 hybrid contribution -1.997 -1.448 0.042 2.467 sum -5.659 30.448 -8.493 32.113 Atomic orbital electron populations 1.23791 0.95304 1.02223 1.01970 1.21736 0.95237 0.95789 0.99399 1.20758 1.00089 0.93904 1.02022 1.21307 0.99827 0.94023 0.89111 1.62040 1.13613 1.38620 1.11946 1.21965 0.90905 1.00301 0.93896 1.22359 1.04033 0.96067 0.97342 1.22076 0.87946 0.93943 0.97175 1.86503 1.47131 1.70283 1.26747 1.22677 0.98841 0.94083 0.83363 0.91091 1.21474 0.96529 0.81296 0.99992 1.45628 1.23839 1.09974 1.56776 1.19925 0.84821 0.85553 0.77528 1.90690 1.22236 1.83710 1.47320 1.23260 1.03087 0.94459 1.05427 1.84683 1.30341 1.06211 1.73424 1.22462 1.07309 0.96258 1.41694 0.92003 1.25586 1.00942 0.94019 0.95570 1.70014 1.39514 1.01635 1.44279 0.85852 0.80456 0.79695 0.80275 1.18616 1.18324 1.16054 1.22503 0.95126 0.86759 1.04761 0.87502 0.88886 0.91949 0.91501 0.91202 0.94544 0.89466 0.90318 0.95148 0.90674 0.88591 0.87597 0.94001 0.89575 0.91282 0.74991 0.86883 0.87038 0.91355 0.88901 0.89271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.17 12.84 67.78 0.87 -1.30 16 2 C -0.12 -1.45 4.98 -16.48 -0.08 -1.54 16 3 C -0.11 -1.14 10.05 71.24 0.72 -0.42 16 4 C 0.08 1.07 4.91 85.56 0.42 1.49 16 5 N -0.54 -7.13 4.74 -904.49 -4.29 -11.42 16 6 C 0.06 0.68 4.27 85.43 0.37 1.04 16 7 C -0.16 -1.76 5.70 30.52 0.17 -1.58 16 8 C 0.07 0.83 6.43 72.56 0.47 1.30 16 9 O -0.39 -6.66 9.42 -100.69 -0.95 -7.61 16 10 C 0.07 1.06 2.30 29.96 0.07 1.13 16 11 H 0.07 1.04 6.39 -2.39 -0.02 1.03 16 12 C 0.13 2.69 5.16 86.38 0.45 3.14 16 13 N -0.71 -17.28 5.46 -463.07 -2.53 -19.81 16 14 C 0.54 18.56 7.85 87.66 0.69 19.25 16 15 O -0.56 -23.89 15.86 -3.04 -0.05 -23.94 16 16 C -0.11 -4.24 6.16 71.24 0.44 -3.80 16 17 S -0.17 -8.80 18.55 -56.49 -1.05 -9.85 16 18 C -0.53 -31.00 10.04 67.96 0.68 -30.32 16 19 H 0.06 3.82 8.03 -2.91 -0.02 3.79 16 20 C 0.04 2.61 5.50 84.86 0.47 3.08 16 21 N -0.92 -55.98 13.97 21.65 0.30 -55.68 16 22 Si 0.92 45.16 27.74 68.60 1.90 47.06 16 23 H -0.26 -12.55 7.11 99.48 0.71 -11.85 16 24 H -0.26 -11.97 7.11 99.48 0.71 -11.27 16 25 H -0.24 -11.66 6.74 99.48 0.67 -10.99 16 26 C 0.04 0.51 4.84 85.59 0.41 0.92 16 27 H 0.11 1.00 8.05 -2.91 -0.02 0.97 16 28 H 0.09 1.04 7.99 -2.91 -0.02 1.01 16 29 H 0.06 0.66 8.00 -2.39 -0.02 0.64 16 30 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.04 0.49 7.53 -2.39 -0.02 0.47 16 33 H 0.09 1.04 7.70 -2.39 -0.02 1.02 16 34 H 0.08 0.96 7.13 -2.39 -0.02 0.94 16 35 H 0.03 0.38 6.31 -2.39 -0.02 0.37 16 36 H 0.07 1.00 7.24 -2.39 -0.02 0.99 16 37 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.04 0.49 7.72 -2.39 -0.02 0.47 16 40 H 0.09 1.73 8.12 -2.38 -0.02 1.71 16 41 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 42 H 0.41 8.08 8.38 -92.71 -0.78 7.31 16 43 H 0.11 3.92 8.14 -2.40 -0.02 3.91 16 44 H 0.11 3.95 8.14 -2.39 -0.02 3.93 16 45 H 0.28 15.63 8.31 -92.71 -0.77 14.86 16 46 H 0.09 1.16 7.16 -2.39 -0.02 1.14 16 47 H 0.09 1.36 7.25 -2.39 -0.02 1.34 16 Total: -1.00 -71.95 386.04 -0.39 -72.34 By element: Atomic # 1 Polarization: 16.36 SS G_CDS: 0.14 Total: 16.50 kcal Atomic # 6 Polarization: -13.75 SS G_CDS: 6.13 Total: -7.61 kcal Atomic # 7 Polarization: -80.38 SS G_CDS: -6.52 Total: -86.90 kcal Atomic # 8 Polarization: -30.55 SS G_CDS: -1.00 Total: -31.54 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 1.90 Total: 47.06 kcal Atomic # 16 Polarization: -8.80 SS G_CDS: -1.05 Total: -9.85 kcal Total: -71.95 -0.39 -72.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001149206886.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.831 kcal (2) G-P(sol) polarization free energy of solvation -71.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds