Wall clock time and date at job start Tue Mar 31 2020 16:23:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50701 * 120.00034 * 2 1 4 4 C 1.53002 * 109.47138 * 125.00364 * 3 2 1 5 5 N 1.46897 * 109.47161 * 179.97438 * 4 3 2 6 6 C 1.47635 * 110.99883 * 66.04238 * 5 4 3 7 7 C 1.50896 * 108.75203 * 153.47713 * 6 5 4 8 8 C 1.53620 * 111.71175 * 91.01653 * 7 6 5 9 9 O 1.44088 * 112.55366 * 318.63439 * 8 7 6 10 10 C 1.40621 * 116.73536 * 318.11197 * 9 8 7 11 11 H 1.09001 * 109.58478 * 333.95991 * 10 9 8 12 12 C 1.53004 * 109.52753 * 213.78729 * 10 9 8 13 13 N 1.46503 * 109.46914 * 65.34371 * 12 10 9 14 14 C 1.34773 * 119.99759 * 180.02562 * 13 12 10 15 15 O 1.21286 * 120.00354 * 359.97438 * 14 13 12 16 16 C 1.50700 * 120.00121 * 179.97438 * 14 13 12 17 17 S 1.80993 * 109.47364 * 179.97438 * 16 14 13 18 18 C 1.76207 * 100.00085 * 180.02562 * 17 16 14 19 19 H 1.07996 * 119.99840 * 359.97438 * 18 17 16 20 20 C 1.38799 * 119.99955 * 180.02562 * 18 17 16 21 21 N 1.31635 * 120.00049 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99904 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47273 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.46831 * 119.99530 * 22 20 18 25 25 H 1.48494 * 109.47300 * 239.99679 * 22 20 18 26 26 C 1.40440 * 110.99968 * 297.72756 * 5 4 3 27 27 H 1.07998 * 120.00377 * 179.97438 * 1 2 3 28 28 H 1.07998 * 119.99800 * 0.02562 * 1 2 3 29 29 H 1.07998 * 119.99800 * 179.97438 * 2 1 3 30 30 H 1.08996 * 109.47236 * 4.99766 * 3 2 1 31 31 H 1.09006 * 109.47022 * 244.99941 * 3 2 1 32 32 H 1.08999 * 109.47130 * 59.99282 * 4 3 2 33 33 H 1.09006 * 109.46818 * 299.99702 * 4 3 2 34 34 H 1.09005 * 109.59107 * 33.70040 * 6 5 4 35 35 H 1.09000 * 109.71405 * 273.33035 * 6 5 4 36 36 H 1.09001 * 109.03599 * 211.58756 * 7 6 5 37 37 H 1.08997 * 109.03277 * 330.44196 * 7 6 5 38 38 H 1.08999 * 108.86533 * 79.43175 * 8 7 6 39 39 H 1.09006 * 108.86568 * 197.84781 * 8 7 6 40 40 H 1.09003 * 109.47050 * 185.34172 * 12 10 9 41 41 H 1.09004 * 109.46980 * 305.34552 * 12 10 9 42 42 H 0.96995 * 119.99785 * 359.97438 * 13 12 10 43 43 H 1.09003 * 109.46970 * 299.99752 * 16 14 13 44 44 H 1.09001 * 109.46908 * 59.99515 * 16 14 13 45 45 H 0.97000 * 119.99482 * 180.02562 * 21 20 18 46 46 H 1.09000 * 109.03852 * 308.88177 * 26 5 4 47 47 H 1.09000 * 109.03578 * 67.82255 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3330 1.1816 5 7 3.7701 2.6049 1.1812 6 6 2.8635 3.7399 1.4450 7 6 3.6579 4.8603 2.0699 8 6 4.2160 5.8214 1.0094 9 8 4.7258 5.1314 -0.1482 10 6 5.4757 3.9658 0.0894 11 1 5.9300 4.0189 1.0788 12 6 6.5719 3.8380 -0.9704 13 7 7.5256 4.9402 -0.8218 14 6 8.5823 5.0336 -1.6531 15 8 8.7440 4.2050 -2.5239 16 6 9.5630 6.1676 -1.5007 17 16 10.8598 6.0164 -2.7542 18 6 11.8376 7.4268 -2.3546 19 1 11.5481 8.0705 -1.5372 20 6 12.9793 7.7109 -3.0909 21 7 13.3319 6.9265 -4.0875 22 14 14.0156 9.2064 -2.6677 23 1 13.4091 9.9185 -1.5143 24 1 15.3904 8.7715 -2.3128 25 1 14.0714 10.1175 -3.8389 26 6 4.5420 2.7398 0.0158 27 1 -0.5401 -0.9353 -0.0004 28 1 -0.5400 0.9353 -0.0004 29 1 1.8500 -0.9353 0.0004 30 1 1.3586 2.1316 0.0895 31 1 2.6213 1.4026 -0.9314 32 1 3.7400 0.5064 1.0920 33 1 2.4773 1.2356 2.1130 34 1 2.0743 3.4261 2.1283 35 1 2.4217 4.0828 0.5093 36 1 3.0131 5.4170 2.7499 37 1 4.4868 4.4355 2.6361 38 1 3.4221 6.4987 0.6949 39 1 5.0211 6.4072 1.4534 40 1 7.0915 2.8883 -0.8430 41 1 6.1237 3.8768 -1.9632 42 1 7.3960 5.6030 -0.1256 43 1 9.0431 7.1172 -1.6280 44 1 10.0114 6.1292 -0.5080 45 1 14.1301 7.1249 -4.6018 46 1 5.1446 1.8414 -0.1175 47 1 3.8767 2.8518 -0.8403 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001149207123.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:23:50 Heat of formation + Delta-G solvation = -60.229445 kcal Electronic energy + Delta-G solvation = -25446.558323 eV Core-core repulsion = 21756.130237 eV Total energy + Delta-G solvation = -3690.428086 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.49760 -38.98361 -37.57812 -34.99364 -34.74514 -32.95077 -32.40237 -30.87247 -29.43157 -27.92570 -26.84791 -25.50141 -24.87635 -22.91540 -21.25649 -20.83196 -20.28548 -20.02002 -17.85764 -17.45111 -16.72310 -16.48617 -15.95992 -15.74114 -15.65795 -15.16746 -14.91776 -14.85280 -14.77869 -14.38700 -13.82958 -13.64241 -13.36467 -13.13021 -13.12408 -12.91498 -12.62409 -12.57674 -12.48143 -11.85460 -11.71803 -11.57268 -11.50050 -11.33081 -11.20331 -11.05212 -10.99218 -10.74134 -10.66806 -9.92589 -9.84287 -9.75954 -9.33974 -9.05336 -8.82682 -8.56986 -8.19640 -6.46650 -6.19346 -3.89370 1.83751 3.03591 3.15677 3.23284 3.27518 3.31633 3.36057 3.53149 3.80040 4.22798 4.32023 4.37959 4.52715 4.60194 4.61766 4.70442 4.82193 4.83489 4.86714 4.92570 5.12593 5.15834 5.18218 5.20550 5.23883 5.32939 5.36590 5.41899 5.49764 5.53557 5.57660 5.64046 5.67421 5.71134 5.78761 5.92709 5.94857 6.17207 6.18531 6.31181 6.61730 6.67083 6.87184 7.11788 7.62414 7.76599 8.38030 8.67054 9.26107 10.88164 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.027612 B = 0.001957 C = 0.001858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.816274 B =14300.646623 C =15066.535398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.149 4.149 3 C -0.135 4.135 4 C 0.067 3.933 5 N -0.551 5.551 6 C 0.064 3.936 7 C -0.156 4.156 8 C 0.061 3.939 9 O -0.378 6.378 10 C 0.088 3.912 11 H 0.074 0.926 12 C 0.127 3.873 13 N -0.733 5.733 14 C 0.532 3.468 15 O -0.519 6.519 16 C -0.153 4.153 17 S -0.061 6.061 18 C -0.534 4.534 19 H 0.073 0.927 20 C 0.073 3.927 21 N -0.868 5.868 22 Si 0.919 3.081 23 H -0.272 1.272 24 H -0.280 1.280 25 H -0.280 1.280 26 C 0.046 3.954 27 H 0.097 0.903 28 H 0.094 0.906 29 H 0.110 0.890 30 H 0.066 0.934 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.048 0.952 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.087 0.913 39 H 0.054 0.946 40 H 0.080 0.920 41 H 0.073 0.927 42 H 0.398 0.602 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.267 0.733 46 H 0.085 0.915 47 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.220 -9.001 14.977 31.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.167 4.167 3 C -0.173 4.173 4 C -0.061 4.061 5 N -0.273 5.273 6 C -0.063 4.063 7 C -0.194 4.194 8 C -0.015 4.015 9 O -0.297 6.297 10 C 0.029 3.971 11 H 0.092 0.908 12 C 0.002 3.998 13 N -0.387 5.387 14 C 0.319 3.681 15 O -0.394 6.394 16 C -0.303 4.303 17 S 0.166 5.834 18 C -0.683 4.683 19 H 0.091 0.909 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.196 1.196 24 H -0.206 1.206 25 H -0.206 1.206 26 C -0.084 4.084 27 H 0.115 0.885 28 H 0.112 0.888 29 H 0.128 0.872 30 H 0.085 0.915 31 H 0.095 0.905 32 H 0.097 0.903 33 H 0.095 0.905 34 H 0.093 0.907 35 H 0.066 0.934 36 H 0.097 0.903 37 H 0.098 0.902 38 H 0.106 0.894 39 H 0.072 0.928 40 H 0.098 0.902 41 H 0.091 0.909 42 H 0.231 0.769 43 H 0.108 0.892 44 H 0.107 0.893 45 H 0.077 0.923 46 H 0.103 0.897 47 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -25.523 -10.349 13.559 30.698 hybrid contribution -0.200 2.143 1.220 2.474 sum -25.723 -8.207 14.778 30.780 Atomic orbital electron populations 1.23858 0.95993 1.01811 1.01622 1.22874 0.95990 0.98293 0.99590 1.21482 0.99269 0.95913 1.00663 1.22179 0.95116 0.91271 0.97524 1.59398 1.26149 1.02814 1.38974 1.21754 0.94087 0.90405 1.00087 1.22045 1.01478 0.96998 0.98902 1.22978 0.98330 0.93613 0.86558 1.87575 1.70430 1.39766 1.31970 1.22186 0.90887 0.85006 0.99044 0.90800 1.21325 0.88423 0.90927 0.99120 1.45846 1.26488 1.29811 1.36587 1.20283 0.80856 0.86383 0.80625 1.90700 1.74021 1.41609 1.33044 1.23522 1.01102 0.98891 1.06808 1.85392 1.22285 1.37250 1.38480 1.22918 1.12345 1.12502 1.20501 0.90883 1.24995 0.96732 0.97374 0.94531 1.70035 1.24765 1.36888 1.18617 0.86114 0.79604 0.81357 0.78397 1.19636 1.20587 1.20581 1.21524 0.96470 0.98991 0.91392 0.88485 0.88766 0.87218 0.91488 0.90519 0.90324 0.90477 0.90709 0.93385 0.90330 0.90217 0.89445 0.92819 0.90227 0.90857 0.76865 0.89224 0.89278 0.92266 0.89691 0.94207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.13 14.32 29.01 0.42 -0.71 16 2 C -0.15 -0.89 9.52 -36.03 -0.34 -1.24 16 3 C -0.13 -0.84 5.10 -27.88 -0.14 -0.98 16 4 C 0.07 0.41 5.16 -3.82 -0.02 0.39 16 5 N -0.55 -4.04 4.25 -239.57 -1.02 -5.06 16 6 C 0.06 0.42 4.33 -4.48 -0.02 0.40 16 7 C -0.16 -0.97 5.41 -27.47 -0.15 -1.12 16 8 C 0.06 0.46 6.72 37.48 0.25 0.71 16 9 O -0.38 -3.89 9.70 -34.27 -0.33 -4.22 16 10 C 0.09 0.84 2.26 -26.06 -0.06 0.78 16 11 H 0.07 0.68 7.11 -51.93 -0.37 0.31 16 12 C 0.13 1.56 5.30 -4.04 -0.02 1.54 16 13 N -0.73 -10.38 5.50 -60.29 -0.33 -10.71 16 14 C 0.53 10.27 7.85 -10.99 -0.09 10.18 16 15 O -0.52 -12.09 15.86 5.55 0.09 -12.00 16 16 C -0.15 -3.16 6.16 36.01 0.22 -2.93 16 17 S -0.06 -1.67 20.57 -107.50 -2.21 -3.89 16 18 C -0.53 -15.40 9.50 30.94 0.29 -15.11 16 19 H 0.07 2.00 7.80 -52.49 -0.41 1.59 16 20 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 21 N -0.87 -26.39 13.22 55.49 0.73 -25.66 16 22 Si 0.92 21.58 29.55 -169.99 -5.02 16.56 16 23 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 24 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 25 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 26 C 0.05 0.39 4.02 -6.50 -0.03 0.36 16 27 H 0.10 0.47 8.06 -52.49 -0.42 0.05 16 28 H 0.09 0.52 7.84 -52.49 -0.41 0.11 16 29 H 0.11 0.58 8.06 -52.49 -0.42 0.16 16 30 H 0.07 0.44 6.87 -51.93 -0.36 0.08 16 31 H 0.08 0.55 6.63 -51.93 -0.34 0.21 16 32 H 0.08 0.47 8.01 -51.93 -0.42 0.05 16 33 H 0.08 0.44 7.91 -51.93 -0.41 0.03 16 34 H 0.07 0.42 7.71 -51.93 -0.40 0.02 16 35 H 0.05 0.37 7.41 -51.93 -0.38 -0.02 16 36 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 37 H 0.08 0.56 7.39 -51.93 -0.38 0.18 16 38 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 40 H 0.08 0.97 8.05 -51.93 -0.42 0.55 16 41 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 42 H 0.40 4.64 8.47 -40.82 -0.35 4.29 16 43 H 0.09 1.73 8.14 -51.92 -0.42 1.30 16 44 H 0.09 1.69 8.14 -51.91 -0.42 1.27 16 45 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 46 H 0.08 0.67 7.74 -51.93 -0.40 0.27 16 47 H 0.04 0.37 6.59 -51.93 -0.34 0.02 16 LS Contribution 389.95 15.07 5.88 5.88 Total: -1.00 -34.51 389.95 -9.91 -44.42 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: -7.91 Total: 0.41 kcal Atomic # 6 Polarization: -5.95 SS G_CDS: 0.22 Total: -5.73 kcal Atomic # 7 Polarization: -40.81 SS G_CDS: -0.62 Total: -41.43 kcal Atomic # 8 Polarization: -15.98 SS G_CDS: -0.24 Total: -16.22 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -34.51 -9.91 -44.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001149207123.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.806 kcal (2) G-P(sol) polarization free energy of solvation -34.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds