Wall clock time and date at job start Tue Mar 31 2020 16:23:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50701 * 120.00034 * 2 1 4 4 C 1.53002 * 109.47138 * 125.00364 * 3 2 1 5 5 N 1.46897 * 109.47161 * 179.97438 * 4 3 2 6 6 C 1.47635 * 110.99883 * 66.04238 * 5 4 3 7 7 C 1.50896 * 108.75203 * 153.47713 * 6 5 4 8 8 C 1.53620 * 111.71175 * 91.01653 * 7 6 5 9 9 O 1.44088 * 112.55366 * 318.63439 * 8 7 6 10 10 C 1.40621 * 116.73536 * 318.11197 * 9 8 7 11 11 H 1.09001 * 109.58478 * 333.95991 * 10 9 8 12 12 C 1.53004 * 109.52753 * 213.78729 * 10 9 8 13 13 N 1.46503 * 109.46914 * 65.34371 * 12 10 9 14 14 C 1.34773 * 119.99759 * 180.02562 * 13 12 10 15 15 O 1.21286 * 120.00354 * 359.97438 * 14 13 12 16 16 C 1.50700 * 120.00121 * 179.97438 * 14 13 12 17 17 S 1.80993 * 109.47364 * 179.97438 * 16 14 13 18 18 C 1.76207 * 100.00085 * 180.02562 * 17 16 14 19 19 H 1.07996 * 119.99840 * 359.97438 * 18 17 16 20 20 C 1.38799 * 119.99955 * 180.02562 * 18 17 16 21 21 N 1.31635 * 120.00049 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99904 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47273 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.46831 * 119.99530 * 22 20 18 25 25 H 1.48494 * 109.47300 * 239.99679 * 22 20 18 26 26 C 1.40440 * 110.99968 * 297.72756 * 5 4 3 27 27 H 1.07998 * 120.00377 * 179.97438 * 1 2 3 28 28 H 1.07998 * 119.99800 * 0.02562 * 1 2 3 29 29 H 1.07998 * 119.99800 * 179.97438 * 2 1 3 30 30 H 1.08996 * 109.47236 * 4.99766 * 3 2 1 31 31 H 1.09006 * 109.47022 * 244.99941 * 3 2 1 32 32 H 1.08999 * 109.47130 * 59.99282 * 4 3 2 33 33 H 1.09006 * 109.46818 * 299.99702 * 4 3 2 34 34 H 1.09005 * 109.59107 * 33.70040 * 6 5 4 35 35 H 1.09000 * 109.71405 * 273.33035 * 6 5 4 36 36 H 1.09001 * 109.03599 * 211.58756 * 7 6 5 37 37 H 1.08997 * 109.03277 * 330.44196 * 7 6 5 38 38 H 1.08999 * 108.86533 * 79.43175 * 8 7 6 39 39 H 1.09006 * 108.86568 * 197.84781 * 8 7 6 40 40 H 1.09003 * 109.47050 * 185.34172 * 12 10 9 41 41 H 1.09004 * 109.46980 * 305.34552 * 12 10 9 42 42 H 0.96995 * 119.99785 * 359.97438 * 13 12 10 43 43 H 1.09003 * 109.46970 * 299.99752 * 16 14 13 44 44 H 1.09001 * 109.46908 * 59.99515 * 16 14 13 45 45 H 0.97000 * 119.99482 * 180.02562 * 21 20 18 46 46 H 1.09000 * 109.03852 * 308.88177 * 26 5 4 47 47 H 1.09000 * 109.03578 * 67.82255 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3330 1.1816 5 7 3.7701 2.6049 1.1812 6 6 2.8635 3.7399 1.4450 7 6 3.6579 4.8603 2.0699 8 6 4.2160 5.8214 1.0094 9 8 4.7258 5.1314 -0.1482 10 6 5.4757 3.9658 0.0894 11 1 5.9300 4.0189 1.0788 12 6 6.5719 3.8380 -0.9704 13 7 7.5256 4.9402 -0.8218 14 6 8.5823 5.0336 -1.6531 15 8 8.7440 4.2050 -2.5239 16 6 9.5630 6.1676 -1.5007 17 16 10.8598 6.0164 -2.7542 18 6 11.8376 7.4268 -2.3546 19 1 11.5481 8.0705 -1.5372 20 6 12.9793 7.7109 -3.0909 21 7 13.3319 6.9265 -4.0875 22 14 14.0156 9.2064 -2.6677 23 1 13.4091 9.9185 -1.5143 24 1 15.3904 8.7715 -2.3128 25 1 14.0714 10.1175 -3.8389 26 6 4.5420 2.7398 0.0158 27 1 -0.5401 -0.9353 -0.0004 28 1 -0.5400 0.9353 -0.0004 29 1 1.8500 -0.9353 0.0004 30 1 1.3586 2.1316 0.0895 31 1 2.6213 1.4026 -0.9314 32 1 3.7400 0.5064 1.0920 33 1 2.4773 1.2356 2.1130 34 1 2.0743 3.4261 2.1283 35 1 2.4217 4.0828 0.5093 36 1 3.0131 5.4170 2.7499 37 1 4.4868 4.4355 2.6361 38 1 3.4221 6.4987 0.6949 39 1 5.0211 6.4072 1.4534 40 1 7.0915 2.8883 -0.8430 41 1 6.1237 3.8768 -1.9632 42 1 7.3960 5.6030 -0.1256 43 1 9.0431 7.1172 -1.6280 44 1 10.0114 6.1292 -0.5080 45 1 14.1301 7.1249 -4.6018 46 1 5.1446 1.8414 -0.1175 47 1 3.8767 2.8518 -0.8403 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001149207123.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:23:49 Heat of formation + Delta-G solvation = -84.771998 kcal Electronic energy + Delta-G solvation = -25447.622568 eV Core-core repulsion = 21756.130237 eV Total energy + Delta-G solvation = -3691.492331 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.24402 -40.37622 -38.25930 -35.98358 -35.41691 -34.57957 -33.77963 -31.81354 -30.62538 -28.72961 -27.70898 -27.45458 -25.68883 -23.59572 -22.12264 -21.55860 -21.33957 -20.59753 -19.83625 -18.17416 -17.92185 -17.58462 -16.88311 -16.84349 -16.57352 -16.49539 -16.25659 -15.90689 -15.58336 -15.48519 -14.96379 -14.73138 -14.42385 -14.38999 -14.14384 -13.79107 -13.62140 -13.38936 -13.15486 -13.14915 -13.07755 -12.90462 -12.60097 -12.36046 -12.25550 -12.05009 -11.84973 -11.75723 -11.69082 -11.31925 -11.15318 -11.01724 -10.46872 -10.38868 -10.26926 -10.13848 -9.15193 -8.66249 -8.34279 -6.12361 1.27061 1.38345 1.42073 1.47277 1.58647 1.61127 2.22584 2.28356 2.62071 2.98734 2.99918 3.32617 3.70307 3.79832 3.92351 3.95213 4.01960 4.06310 4.13271 4.17489 4.28338 4.29051 4.35213 4.40970 4.50640 4.50990 4.57762 4.67043 4.69516 4.72899 4.74904 4.89771 4.93991 5.00807 5.06967 5.10536 5.21295 5.28612 5.39399 5.42795 5.72363 5.85897 6.09801 6.20709 6.25582 6.43804 6.47964 7.07068 7.22452 8.75278 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.027612 B = 0.001957 C = 0.001858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.816274 B =14300.646623 C =15066.535398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.157 4.157 3 C -0.128 4.128 4 C 0.069 3.931 5 N -0.554 5.554 6 C 0.063 3.937 7 C -0.150 4.150 8 C 0.055 3.945 9 O -0.400 6.400 10 C 0.100 3.900 11 H 0.083 0.917 12 C 0.126 3.874 13 N -0.708 5.708 14 C 0.534 3.466 15 O -0.566 6.566 16 C -0.129 4.129 17 S -0.151 6.151 18 C -0.546 4.546 19 H 0.083 0.917 20 C 0.013 3.987 21 N -0.911 5.911 22 Si 1.000 3.000 23 H -0.257 1.257 24 H -0.273 1.273 25 H -0.274 1.274 26 C 0.053 3.947 27 H 0.106 0.894 28 H 0.095 0.905 29 H 0.116 0.884 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.036 0.964 36 H 0.098 0.902 37 H 0.074 0.926 38 H 0.095 0.905 39 H 0.061 0.939 40 H 0.082 0.918 41 H 0.057 0.943 42 H 0.414 0.586 43 H 0.108 0.892 44 H 0.111 0.889 45 H 0.271 0.729 46 H 0.088 0.912 47 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.329 -7.914 17.466 33.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.176 4.176 3 C -0.167 4.167 4 C -0.058 4.058 5 N -0.276 5.276 6 C -0.063 4.063 7 C -0.188 4.188 8 C -0.020 4.020 9 O -0.319 6.319 10 C 0.041 3.959 11 H 0.101 0.899 12 C 0.001 3.999 13 N -0.361 5.361 14 C 0.320 3.680 15 O -0.445 6.445 16 C -0.280 4.280 17 S 0.076 5.924 18 C -0.694 4.694 19 H 0.101 0.899 20 C -0.192 4.192 21 N -0.548 5.548 22 Si 0.822 3.178 23 H -0.180 1.180 24 H -0.199 1.199 25 H -0.199 1.199 26 C -0.077 4.077 27 H 0.124 0.876 28 H 0.113 0.887 29 H 0.134 0.866 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.099 0.901 33 H 0.104 0.896 34 H 0.106 0.894 35 H 0.055 0.945 36 H 0.116 0.884 37 H 0.093 0.907 38 H 0.113 0.887 39 H 0.079 0.921 40 H 0.100 0.900 41 H 0.076 0.924 42 H 0.250 0.750 43 H 0.126 0.874 44 H 0.129 0.871 45 H 0.080 0.920 46 H 0.106 0.894 47 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -26.683 -9.252 16.099 32.508 hybrid contribution -0.011 1.767 0.498 1.835 sum -26.695 -7.485 16.597 32.313 Atomic orbital electron populations 1.23999 0.96028 1.02357 1.01053 1.22945 0.96199 0.98364 1.00084 1.21394 0.99087 0.96045 1.00152 1.22192 0.95063 0.90760 0.97771 1.59429 1.26533 1.03554 1.38111 1.21802 0.94326 0.90347 0.99876 1.22007 1.01512 0.96701 0.98568 1.23168 0.98842 0.93848 0.86162 1.87545 1.70601 1.39991 1.33787 1.22009 0.90294 0.85568 0.98015 0.89890 1.21454 0.88709 0.90189 0.99502 1.45601 1.24913 1.30284 1.35327 1.20059 0.81649 0.85498 0.80790 1.90689 1.75327 1.43161 1.35274 1.23361 0.99219 1.00418 1.05001 1.85575 1.25839 1.38309 1.42652 1.23246 1.12745 1.12505 1.20882 0.89886 1.26142 0.98095 1.00831 0.94133 1.70196 1.25530 1.39132 1.19939 0.84887 0.77478 0.76835 0.78617 1.18021 1.19877 1.19949 1.21405 0.96280 0.98491 0.91560 0.87596 0.88655 0.86626 0.91807 0.91748 0.90127 0.89606 0.89389 0.94533 0.88357 0.90716 0.88704 0.92102 0.90000 0.92437 0.74996 0.87403 0.87071 0.91991 0.89375 0.95321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.05 14.32 67.78 0.97 -1.08 16 2 C -0.16 -1.73 9.52 25.65 0.24 -1.49 16 3 C -0.13 -1.50 5.10 29.85 0.15 -1.35 16 4 C 0.07 0.75 5.16 86.30 0.45 1.20 16 5 N -0.55 -7.26 4.25 -911.86 -3.88 -11.14 16 6 C 0.06 0.72 4.33 85.48 0.37 1.09 16 7 C -0.15 -1.50 5.41 30.12 0.16 -1.34 16 8 C 0.06 0.71 6.72 72.19 0.48 1.20 16 9 O -0.40 -7.65 9.70 -145.52 -1.41 -9.06 16 10 C 0.10 1.78 2.26 31.03 0.07 1.85 16 11 H 0.08 1.35 7.11 -2.39 -0.02 1.33 16 12 C 0.13 3.01 5.30 86.38 0.46 3.47 16 13 N -0.71 -19.15 5.50 -463.04 -2.55 -21.70 16 14 C 0.53 20.43 7.85 87.66 0.69 21.11 16 15 O -0.57 -26.95 15.86 -3.05 -0.05 -27.00 16 16 C -0.13 -5.23 6.16 71.24 0.44 -4.79 16 17 S -0.15 -8.51 20.57 -56.49 -1.16 -9.68 16 18 C -0.55 -31.50 9.50 67.95 0.65 -30.85 16 19 H 0.08 4.45 7.80 -2.91 -0.02 4.43 16 20 C 0.01 0.72 5.49 84.86 0.47 1.19 16 21 N -0.91 -56.43 13.22 21.65 0.29 -56.15 16 22 Si 1.00 43.89 29.55 68.60 2.03 45.92 16 23 H -0.26 -10.50 7.11 99.48 0.71 -9.80 16 24 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 25 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 26 C 0.05 0.84 4.02 87.91 0.35 1.19 16 27 H 0.11 0.89 8.06 -2.91 -0.02 0.86 16 28 H 0.10 0.95 7.84 -2.91 -0.02 0.92 16 29 H 0.12 1.11 8.06 -2.91 -0.02 1.09 16 30 H 0.06 0.78 6.87 -2.39 -0.02 0.76 16 31 H 0.06 0.92 6.63 -2.38 -0.02 0.90 16 32 H 0.08 0.85 8.01 -2.39 -0.02 0.84 16 33 H 0.09 0.81 7.91 -2.38 -0.02 0.79 16 34 H 0.09 0.78 7.71 -2.38 -0.02 0.76 16 35 H 0.04 0.51 7.41 -2.39 -0.02 0.50 16 36 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 37 H 0.07 0.86 7.39 -2.39 -0.02 0.84 16 38 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 40 H 0.08 1.96 8.05 -2.39 -0.02 1.95 16 41 H 0.06 1.60 8.14 -2.38 -0.02 1.58 16 42 H 0.41 8.68 8.47 -92.71 -0.79 7.90 16 43 H 0.11 3.99 8.14 -2.39 -0.02 3.97 16 44 H 0.11 4.02 8.14 -2.40 -0.02 4.00 16 45 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 46 H 0.09 1.32 7.74 -2.39 -0.02 1.30 16 47 H 0.03 0.52 6.59 -2.39 -0.02 0.51 16 Total: -1.00 -76.16 389.95 -0.62 -76.78 By element: Atomic # 1 Polarization: 20.44 SS G_CDS: 0.16 Total: 20.61 kcal Atomic # 6 Polarization: -14.54 SS G_CDS: 5.95 Total: -8.58 kcal Atomic # 7 Polarization: -82.84 SS G_CDS: -6.14 Total: -88.98 kcal Atomic # 8 Polarization: -34.60 SS G_CDS: -1.46 Total: -36.06 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Atomic # 16 Polarization: -8.51 SS G_CDS: -1.16 Total: -9.68 kcal Total: -76.16 -0.62 -76.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001149207123.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.990 kcal (2) G-P(sol) polarization free energy of solvation -76.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds