Wall clock time and date at job start Tue Mar 31 2020 16:23:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50700 * 119.99593 * 2 1 4 4 C 1.53005 * 109.47139 * 124.99703 * 3 2 1 5 5 N 1.46900 * 109.46991 * 179.97438 * 4 3 2 6 6 C 1.48021 * 110.99942 * 66.04921 * 5 4 3 7 7 C 1.50985 * 113.12981 * 83.99897 * 6 5 4 8 8 C 1.54707 * 109.08348 * 92.03834 * 7 6 5 9 9 O 1.36610 * 110.79669 * 286.65571 * 8 7 6 10 10 C 1.43451 * 117.83727 * 61.03292 * 9 8 7 11 11 H 1.09002 * 109.84247 * 37.49903 * 10 9 8 12 12 C 1.53004 * 109.83737 * 158.40349 * 10 9 8 13 13 N 1.46499 * 109.47198 * 300.00121 * 12 10 9 14 14 C 1.34777 * 119.99665 * 180.27868 * 13 12 10 15 15 O 1.21283 * 119.99990 * 359.71991 * 14 13 12 16 16 C 1.50698 * 119.99538 * 179.72653 * 14 13 12 17 17 S 1.81005 * 109.46906 * 179.97438 * 16 14 13 18 18 C 1.76201 * 99.99828 * 179.97438 * 17 16 14 19 19 H 1.07994 * 120.00390 * 359.97438 * 18 17 16 20 20 C 1.38797 * 119.99869 * 179.97438 * 18 17 16 21 21 N 1.31628 * 120.00444 * 179.97438 * 20 18 17 22 22 Si 1.86805 * 120.00089 * 0.02562 * 20 18 17 23 23 H 1.48493 * 109.47406 * 89.99536 * 22 20 18 24 24 H 1.48502 * 109.46978 * 209.99777 * 22 20 18 25 25 H 1.48504 * 109.47081 * 329.99606 * 22 20 18 26 26 C 1.47399 * 110.99964 * 193.23415 * 5 4 3 27 27 H 1.08009 * 119.99446 * 180.02562 * 1 2 3 28 28 H 1.07996 * 120.00848 * 359.97438 * 1 2 3 29 29 H 1.07997 * 120.00232 * 179.97438 * 2 1 3 30 30 H 1.09000 * 109.47043 * 5.00436 * 3 2 1 31 31 H 1.08994 * 109.47099 * 244.99639 * 3 2 1 32 32 H 1.09000 * 109.46938 * 60.00053 * 4 3 2 33 33 H 1.09000 * 109.47515 * 300.00482 * 4 3 2 34 34 H 1.08993 * 108.75612 * 323.05595 * 6 5 4 35 35 H 1.09000 * 108.65624 * 204.86827 * 6 5 4 36 36 H 1.09001 * 109.53998 * 332.15743 * 7 6 5 37 37 H 1.09005 * 109.60052 * 211.96158 * 7 6 5 38 38 H 1.09004 * 109.21423 * 166.31198 * 8 7 6 39 39 H 1.08998 * 109.20914 * 46.99262 * 8 7 6 40 40 H 1.09009 * 109.46730 * 179.97438 * 12 10 9 41 41 H 1.08998 * 109.46846 * 60.00453 * 12 10 9 42 42 H 0.97001 * 119.99790 * 359.97438 * 13 12 10 43 43 H 1.09003 * 109.47112 * 299.99065 * 16 14 13 44 44 H 1.08993 * 109.47916 * 59.99687 * 16 14 13 45 45 H 0.96995 * 120.00766 * 180.02562 * 21 20 18 46 46 H 1.09000 * 109.06226 * 72.72735 * 26 5 4 47 47 H 1.09001 * 109.05970 * 313.80785 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 3.0349 1.3332 1.1817 5 7 3.7697 2.6052 1.1813 6 6 2.8607 3.7431 1.4457 7 6 2.6135 3.9753 2.9170 8 6 3.6461 4.9975 3.4482 9 8 4.8830 4.4273 3.5538 10 6 5.4929 3.9239 2.3569 11 1 5.2649 4.5837 1.5197 12 6 7.0083 3.8302 2.5461 13 7 7.5468 5.1604 2.8411 14 6 8.8697 5.3226 3.0413 15 8 9.6136 4.3665 2.9822 16 6 9.4243 6.6918 3.3387 17 16 11.2178 6.5819 3.5568 18 6 11.5906 8.2730 3.8821 19 1 10.7989 9.0073 3.8975 20 6 12.9020 8.6615 4.1187 21 7 13.1807 9.9249 4.3613 22 14 14.2717 7.3916 4.0915 23 1 14.8153 7.2793 2.7142 24 1 15.3538 7.8107 5.0182 25 1 13.7348 6.0752 4.5206 26 6 4.9227 2.5495 2.0980 27 1 -0.5400 -0.9354 0.0004 28 1 -0.5401 0.9352 0.0004 29 1 1.8500 -0.9353 0.0004 30 1 1.3584 2.1316 0.0896 31 1 2.6212 1.4027 -0.9313 32 1 3.7399 0.5068 1.0922 33 1 2.4771 1.2356 2.1131 34 1 1.9061 3.5501 0.9563 35 1 3.2974 4.6452 1.0173 36 1 2.7205 3.0348 3.4575 37 1 1.6062 4.3660 3.0614 38 1 3.3291 5.3508 4.4295 39 1 3.6985 5.8435 2.7630 40 1 7.4654 3.4469 1.6338 41 1 7.2301 3.1566 3.3739 42 1 6.9517 5.9250 2.8880 43 1 9.1993 7.3629 2.5097 44 1 8.9707 7.0773 4.2517 45 1 14.0971 10.1964 4.5262 46 1 5.6965 1.9199 1.6588 47 1 4.6042 2.1121 3.0443 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001149207125.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:23:53 Heat of formation + Delta-G solvation = -58.261414 kcal Electronic energy + Delta-G solvation = -25358.276618 eV Core-core repulsion = 21667.933872 eV Total energy + Delta-G solvation = -3690.342746 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.72365 -39.09124 -37.56376 -35.10729 -35.01360 -32.79265 -32.41417 -31.09325 -29.65031 -27.95254 -26.83459 -25.61112 -24.66295 -23.29565 -21.67028 -20.71316 -20.20061 -20.00963 -17.93379 -17.22334 -17.00133 -16.82715 -16.34815 -15.96972 -15.59772 -15.32713 -15.09749 -14.92177 -14.81658 -14.04311 -13.83931 -13.61845 -13.38671 -13.32444 -13.16865 -12.92251 -12.88713 -12.76353 -12.32420 -12.27771 -11.91355 -11.72921 -11.53040 -11.32627 -11.23865 -11.12934 -10.98681 -10.68287 -10.57718 -9.96356 -9.84104 -9.79867 -9.48878 -8.99520 -8.92936 -8.72133 -8.47115 -6.88804 -6.26627 -3.98062 1.79476 2.78073 3.01674 3.17678 3.26082 3.35180 3.47544 3.52990 3.71752 4.25856 4.28292 4.35524 4.46269 4.50558 4.55822 4.62922 4.71104 4.77574 4.81545 4.83270 4.87812 5.03433 5.12473 5.14817 5.19657 5.26905 5.30364 5.35838 5.39100 5.43621 5.48224 5.54572 5.57391 5.62554 5.75346 5.78674 5.81887 6.05773 6.14620 6.28001 6.52075 6.55100 6.58170 7.19595 7.65345 7.96424 8.44054 8.52978 9.19655 10.82607 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.033732 B = 0.001904 C = 0.001837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.873456 B =14699.399615 C =15242.699847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.152 4.152 3 C -0.092 4.092 4 C 0.061 3.939 5 N -0.543 5.543 6 C 0.044 3.956 7 C -0.195 4.195 8 C 0.075 3.925 9 O -0.376 6.376 10 C 0.084 3.916 11 H 0.080 0.920 12 C 0.134 3.866 13 N -0.731 5.731 14 C 0.532 3.468 15 O -0.522 6.522 16 C -0.123 4.123 17 S -0.142 6.142 18 C -0.521 4.521 19 H 0.088 0.912 20 C 0.096 3.904 21 N -0.881 5.881 22 Si 0.857 3.143 23 H -0.267 1.267 24 H -0.274 1.274 25 H -0.235 1.235 26 C 0.034 3.966 27 H 0.097 0.903 28 H 0.095 0.905 29 H 0.109 0.891 30 H 0.067 0.933 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.036 0.964 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.071 0.929 37 H 0.078 0.922 38 H 0.095 0.905 39 H 0.042 0.958 40 H 0.085 0.915 41 H 0.075 0.925 42 H 0.401 0.599 43 H 0.096 0.904 44 H 0.097 0.903 45 H 0.270 0.730 46 H 0.090 0.910 47 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.196 -16.171 -7.092 33.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.171 4.171 3 C -0.129 4.129 4 C -0.067 4.067 5 N -0.267 5.267 6 C -0.084 4.084 7 C -0.234 4.234 8 C -0.003 4.003 9 O -0.294 6.294 10 C 0.026 3.974 11 H 0.098 0.902 12 C 0.009 3.991 13 N -0.385 5.385 14 C 0.317 3.683 15 O -0.396 6.396 16 C -0.274 4.274 17 S 0.084 5.916 18 C -0.669 4.669 19 H 0.106 0.894 20 C -0.113 4.113 21 N -0.518 5.518 22 Si 0.682 3.318 23 H -0.192 1.192 24 H -0.200 1.200 25 H -0.159 1.159 26 C -0.094 4.094 27 H 0.115 0.885 28 H 0.113 0.887 29 H 0.127 0.873 30 H 0.086 0.914 31 H 0.100 0.900 32 H 0.095 0.905 33 H 0.054 0.946 34 H 0.095 0.905 35 H 0.092 0.908 36 H 0.090 0.910 37 H 0.096 0.904 38 H 0.113 0.887 39 H 0.060 0.940 40 H 0.103 0.897 41 H 0.093 0.907 42 H 0.235 0.765 43 H 0.115 0.885 44 H 0.116 0.884 45 H 0.080 0.920 46 H 0.108 0.892 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -26.529 -17.578 -7.432 32.680 hybrid contribution -1.138 1.070 0.681 1.704 sum -27.667 -16.508 -6.751 32.917 Atomic orbital electron populations 1.23863 0.95971 1.01851 1.01493 1.22937 0.96022 0.98520 0.99596 1.20808 0.97735 0.95076 0.99299 1.22023 0.95961 0.91615 0.97103 1.62217 1.09186 1.03293 1.51976 1.22154 0.96965 0.94584 0.94689 1.22883 1.01071 1.01472 0.98016 1.21860 0.82997 0.93531 1.01909 1.86527 1.31905 1.77809 1.33142 1.22222 0.92507 0.94774 0.87847 0.90224 1.21283 0.89284 0.86103 1.02431 1.45790 1.08122 1.10137 1.74442 1.20258 0.81399 0.90889 0.75706 1.90698 1.57753 1.41746 1.49430 1.23268 1.02599 0.96209 1.05315 1.84777 0.98897 1.14630 1.93265 1.22327 0.97677 0.91058 1.55817 0.89396 1.24709 0.98070 0.95286 0.93224 1.69937 1.20458 1.15310 1.46052 0.86733 0.82281 0.83544 0.79278 1.19226 1.19969 1.15905 1.22396 0.93511 0.97665 0.95801 0.88497 0.88688 0.87297 0.91433 0.89956 0.90495 0.94612 0.90528 0.90763 0.91024 0.90371 0.88703 0.94033 0.89727 0.90681 0.76482 0.88527 0.88424 0.91971 0.89203 0.92891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.01 14.32 29.02 0.42 -0.59 16 2 C -0.15 -0.83 9.52 -36.03 -0.34 -1.17 16 3 C -0.09 -0.52 5.64 -27.88 -0.16 -0.68 16 4 C 0.06 0.38 4.83 -3.82 -0.02 0.37 16 5 N -0.54 -3.91 4.74 -235.72 -1.12 -5.03 16 6 C 0.04 0.28 4.99 -4.22 -0.02 0.26 16 7 C -0.20 -1.22 5.63 -26.85 -0.15 -1.37 16 8 C 0.08 0.54 6.43 38.06 0.24 0.79 16 9 O -0.38 -3.57 9.38 -21.71 -0.20 -3.78 16 10 C 0.08 0.73 2.37 -27.72 -0.07 0.67 16 11 H 0.08 0.67 6.78 -51.93 -0.35 0.32 16 12 C 0.13 1.50 5.16 -4.04 -0.02 1.48 16 13 N -0.73 -9.60 5.46 -60.29 -0.33 -9.93 16 14 C 0.53 9.59 7.85 -10.99 -0.09 9.50 16 15 O -0.52 -11.35 15.86 5.55 0.09 -11.26 16 16 C -0.12 -2.42 6.16 36.00 0.22 -2.20 16 17 S -0.14 -3.64 18.55 -107.50 -1.99 -5.63 16 18 C -0.52 -15.14 10.04 30.94 0.31 -14.83 16 19 H 0.09 2.66 8.03 -52.49 -0.42 2.24 16 20 C 0.10 2.82 5.50 -17.43 -0.10 2.72 16 21 N -0.88 -26.72 13.97 55.49 0.78 -25.94 16 22 Si 0.86 21.94 27.74 -169.99 -4.72 17.22 16 23 H -0.27 -6.76 7.11 56.52 0.40 -6.35 16 24 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 25 H -0.24 -6.02 6.74 56.52 0.38 -5.64 16 26 C 0.03 0.27 4.62 -4.54 -0.02 0.25 16 27 H 0.10 0.42 8.06 -52.48 -0.42 0.00 16 28 H 0.09 0.45 7.84 -52.49 -0.41 0.04 16 29 H 0.11 0.53 8.06 -52.49 -0.42 0.11 16 30 H 0.07 0.37 5.88 -51.93 -0.31 0.07 16 31 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.08 0.48 8.04 -51.93 -0.42 0.06 16 33 H 0.04 0.24 7.58 -51.93 -0.39 -0.15 16 34 H 0.08 0.43 5.81 -51.93 -0.30 0.13 16 35 H 0.07 0.50 6.54 -51.93 -0.34 0.16 16 36 H 0.07 0.53 6.69 -51.93 -0.35 0.19 16 37 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.04 0.27 7.72 -51.93 -0.40 -0.13 16 40 H 0.08 0.94 8.14 -51.92 -0.42 0.52 16 41 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 42 H 0.40 4.36 8.36 -40.82 -0.34 4.02 16 43 H 0.10 1.75 8.14 -51.92 -0.42 1.33 16 44 H 0.10 1.80 8.14 -51.92 -0.42 1.38 16 45 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 46 H 0.09 0.68 7.74 -51.93 -0.40 0.28 16 47 H 0.05 0.45 7.12 -51.93 -0.37 0.08 16 LS Contribution 385.22 15.07 5.81 5.81 Total: -1.00 -33.81 385.22 -9.24 -43.05 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -7.76 Total: 0.32 kcal Atomic # 6 Polarization: -5.03 SS G_CDS: 0.21 Total: -4.81 kcal Atomic # 7 Polarization: -40.23 SS G_CDS: -0.67 Total: -40.91 kcal Atomic # 8 Polarization: -14.93 SS G_CDS: -0.12 Total: -15.04 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.72 Total: 17.22 kcal Atomic # 16 Polarization: -3.64 SS G_CDS: -1.99 Total: -5.63 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -33.81 -9.24 -43.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001149207125.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.209 kcal (2) G-P(sol) polarization free energy of solvation -33.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds