Wall clock time and date at job start Tue Mar 31 2020 16:23:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50700 * 119.99593 * 2 1 4 4 C 1.53005 * 109.47139 * 124.99703 * 3 2 1 5 5 N 1.46900 * 109.46991 * 179.97438 * 4 3 2 6 6 C 1.48021 * 110.99942 * 66.04921 * 5 4 3 7 7 C 1.50985 * 113.12981 * 83.99897 * 6 5 4 8 8 C 1.54707 * 109.08348 * 92.03834 * 7 6 5 9 9 O 1.36610 * 110.79669 * 286.65571 * 8 7 6 10 10 C 1.43451 * 117.83727 * 61.03292 * 9 8 7 11 11 H 1.09002 * 109.84247 * 37.49903 * 10 9 8 12 12 C 1.53004 * 109.83737 * 158.40349 * 10 9 8 13 13 N 1.46499 * 109.47198 * 300.00121 * 12 10 9 14 14 C 1.34777 * 119.99665 * 180.27868 * 13 12 10 15 15 O 1.21283 * 119.99990 * 359.71991 * 14 13 12 16 16 C 1.50698 * 119.99538 * 179.72653 * 14 13 12 17 17 S 1.81005 * 109.46906 * 179.97438 * 16 14 13 18 18 C 1.76201 * 99.99828 * 179.97438 * 17 16 14 19 19 H 1.07994 * 120.00390 * 359.97438 * 18 17 16 20 20 C 1.38797 * 119.99869 * 179.97438 * 18 17 16 21 21 N 1.31628 * 120.00444 * 179.97438 * 20 18 17 22 22 Si 1.86805 * 120.00089 * 0.02562 * 20 18 17 23 23 H 1.48493 * 109.47406 * 89.99536 * 22 20 18 24 24 H 1.48502 * 109.46978 * 209.99777 * 22 20 18 25 25 H 1.48504 * 109.47081 * 329.99606 * 22 20 18 26 26 C 1.47399 * 110.99964 * 193.23415 * 5 4 3 27 27 H 1.08009 * 119.99446 * 180.02562 * 1 2 3 28 28 H 1.07996 * 120.00848 * 359.97438 * 1 2 3 29 29 H 1.07997 * 120.00232 * 179.97438 * 2 1 3 30 30 H 1.09000 * 109.47043 * 5.00436 * 3 2 1 31 31 H 1.08994 * 109.47099 * 244.99639 * 3 2 1 32 32 H 1.09000 * 109.46938 * 60.00053 * 4 3 2 33 33 H 1.09000 * 109.47515 * 300.00482 * 4 3 2 34 34 H 1.08993 * 108.75612 * 323.05595 * 6 5 4 35 35 H 1.09000 * 108.65624 * 204.86827 * 6 5 4 36 36 H 1.09001 * 109.53998 * 332.15743 * 7 6 5 37 37 H 1.09005 * 109.60052 * 211.96158 * 7 6 5 38 38 H 1.09004 * 109.21423 * 166.31198 * 8 7 6 39 39 H 1.08998 * 109.20914 * 46.99262 * 8 7 6 40 40 H 1.09009 * 109.46730 * 179.97438 * 12 10 9 41 41 H 1.08998 * 109.46846 * 60.00453 * 12 10 9 42 42 H 0.97001 * 119.99790 * 359.97438 * 13 12 10 43 43 H 1.09003 * 109.47112 * 299.99065 * 16 14 13 44 44 H 1.08993 * 109.47916 * 59.99687 * 16 14 13 45 45 H 0.96995 * 120.00766 * 180.02562 * 21 20 18 46 46 H 1.09000 * 109.06226 * 72.72735 * 26 5 4 47 47 H 1.09001 * 109.05970 * 313.80785 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 3.0349 1.3332 1.1817 5 7 3.7697 2.6052 1.1813 6 6 2.8607 3.7431 1.4457 7 6 2.6135 3.9753 2.9170 8 6 3.6461 4.9975 3.4482 9 8 4.8830 4.4273 3.5538 10 6 5.4929 3.9239 2.3569 11 1 5.2649 4.5837 1.5197 12 6 7.0083 3.8302 2.5461 13 7 7.5468 5.1604 2.8411 14 6 8.8697 5.3226 3.0413 15 8 9.6136 4.3665 2.9822 16 6 9.4243 6.6918 3.3387 17 16 11.2178 6.5819 3.5568 18 6 11.5906 8.2730 3.8821 19 1 10.7989 9.0073 3.8975 20 6 12.9020 8.6615 4.1187 21 7 13.1807 9.9249 4.3613 22 14 14.2717 7.3916 4.0915 23 1 14.8153 7.2793 2.7142 24 1 15.3538 7.8107 5.0182 25 1 13.7348 6.0752 4.5206 26 6 4.9227 2.5495 2.0980 27 1 -0.5400 -0.9354 0.0004 28 1 -0.5401 0.9352 0.0004 29 1 1.8500 -0.9353 0.0004 30 1 1.3584 2.1316 0.0896 31 1 2.6212 1.4027 -0.9313 32 1 3.7399 0.5068 1.0922 33 1 2.4771 1.2356 2.1131 34 1 1.9061 3.5501 0.9563 35 1 3.2974 4.6452 1.0173 36 1 2.7205 3.0348 3.4575 37 1 1.6062 4.3660 3.0614 38 1 3.3291 5.3508 4.4295 39 1 3.6985 5.8435 2.7630 40 1 7.4654 3.4469 1.6338 41 1 7.2301 3.1566 3.3739 42 1 6.9517 5.9250 2.8880 43 1 9.1993 7.3629 2.5097 44 1 8.9707 7.0773 4.2517 45 1 14.0971 10.1964 4.5262 46 1 5.6965 1.9199 1.6588 47 1 4.6042 2.1121 3.0443 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001149207125.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:23:52 Heat of formation + Delta-G solvation = -82.162699 kcal Electronic energy + Delta-G solvation = -25359.313055 eV Core-core repulsion = 21667.933872 eV Total energy + Delta-G solvation = -3691.379184 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.42240 -40.42692 -38.14179 -36.13266 -35.53998 -34.66331 -33.63757 -31.83674 -30.84249 -28.74220 -27.84209 -27.40524 -25.49675 -23.81938 -22.38685 -21.83436 -20.87818 -20.53796 -19.88795 -18.05230 -17.88896 -17.77244 -17.34379 -17.10069 -16.58825 -16.51052 -16.39027 -16.01877 -15.63450 -15.32714 -14.92298 -14.72312 -14.49473 -14.44664 -14.13916 -13.79158 -13.56676 -13.50133 -13.39085 -13.31811 -12.99669 -12.88607 -12.77217 -12.65627 -12.35620 -12.04732 -11.86444 -11.79637 -11.66381 -11.25553 -11.16039 -11.03526 -10.55584 -10.52628 -10.22514 -10.15206 -9.27620 -8.98436 -8.50523 -6.21343 0.99723 1.32529 1.39431 1.47902 1.56462 1.57625 2.19606 2.26807 2.52912 2.71478 2.87742 2.89497 3.63230 3.73613 3.81470 3.91468 3.95978 4.03435 4.04055 4.22498 4.23470 4.28480 4.33346 4.40593 4.48258 4.52056 4.54502 4.64436 4.67757 4.69958 4.80034 4.85935 4.92515 4.99247 5.01708 5.10683 5.15381 5.25856 5.37063 5.71666 5.75282 5.87485 5.99379 6.05398 6.12346 6.44992 6.56486 6.94650 7.18261 8.61850 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.033732 B = 0.001904 C = 0.001837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.873456 B =14699.399615 C =15242.699847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.162 4.162 3 C -0.085 4.085 4 C 0.063 3.937 5 N -0.547 5.547 6 C 0.042 3.958 7 C -0.187 4.187 8 C 0.068 3.932 9 O -0.393 6.393 10 C 0.096 3.904 11 H 0.088 0.912 12 C 0.133 3.867 13 N -0.707 5.707 14 C 0.536 3.464 15 O -0.563 6.563 16 C -0.111 4.111 17 S -0.174 6.174 18 C -0.530 4.530 19 H 0.062 0.938 20 C 0.046 3.954 21 N -0.917 5.917 22 Si 0.914 3.086 23 H -0.262 1.262 24 H -0.259 1.259 25 H -0.237 1.237 26 C 0.039 3.961 27 H 0.104 0.896 28 H 0.099 0.901 29 H 0.113 0.887 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.032 0.968 34 H 0.085 0.915 35 H 0.074 0.926 36 H 0.058 0.942 37 H 0.093 0.907 38 H 0.101 0.899 39 H 0.051 0.949 40 H 0.089 0.911 41 H 0.065 0.935 42 H 0.415 0.585 43 H 0.114 0.886 44 H 0.112 0.888 45 H 0.277 0.723 46 H 0.092 0.908 47 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.752 -17.068 -7.681 35.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.180 4.180 3 C -0.123 4.123 4 C -0.064 4.064 5 N -0.272 5.272 6 C -0.085 4.085 7 C -0.226 4.226 8 C -0.009 4.009 9 O -0.312 6.312 10 C 0.038 3.962 11 H 0.106 0.894 12 C 0.009 3.991 13 N -0.360 5.360 14 C 0.322 3.678 15 O -0.441 6.441 16 C -0.262 4.262 17 S 0.052 5.948 18 C -0.678 4.678 19 H 0.080 0.920 20 C -0.159 4.159 21 N -0.555 5.555 22 Si 0.736 3.264 23 H -0.186 1.186 24 H -0.183 1.183 25 H -0.161 1.161 26 C -0.089 4.089 27 H 0.122 0.878 28 H 0.117 0.883 29 H 0.131 0.869 30 H 0.088 0.912 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.050 0.950 34 H 0.104 0.896 35 H 0.092 0.908 36 H 0.077 0.923 37 H 0.111 0.889 38 H 0.119 0.881 39 H 0.069 0.931 40 H 0.107 0.893 41 H 0.083 0.917 42 H 0.252 0.748 43 H 0.133 0.867 44 H 0.130 0.870 45 H 0.086 0.914 46 H 0.110 0.890 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -28.146 -18.457 -8.025 34.602 hybrid contribution -0.864 1.367 0.850 1.827 sum -29.010 -17.091 -7.176 34.426 Atomic orbital electron populations 1.24011 0.95982 1.02456 1.00841 1.23000 0.96251 0.98595 1.00171 1.20735 0.97510 0.95361 0.98655 1.22013 0.95951 0.91241 0.97218 1.62231 1.09368 1.03930 1.51631 1.22202 0.97214 0.94238 0.94853 1.22797 1.01590 1.00608 0.97590 1.22025 0.82310 0.93945 1.02644 1.86499 1.33032 1.78145 1.33495 1.22048 0.90667 0.95511 0.87931 0.89373 1.21412 0.91034 0.84508 1.02166 1.45576 1.06530 1.11708 1.72223 1.19921 0.82664 0.89482 0.75759 1.90689 1.59088 1.42546 1.51804 1.23260 0.97998 0.98087 1.06847 1.84693 1.04634 1.12066 1.93402 1.22472 0.97321 0.92461 1.55513 0.91974 1.25558 1.00372 0.97088 0.92894 1.70012 1.21453 1.16989 1.47033 0.85866 0.79720 0.81004 0.79775 1.18632 1.18331 1.16094 1.22303 0.93942 0.97021 0.95672 0.87774 0.88308 0.86935 0.91163 0.90466 0.90535 0.94979 0.89634 0.90754 0.92287 0.88880 0.88150 0.93068 0.89341 0.91690 0.74817 0.86739 0.87006 0.91374 0.88998 0.93642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.74 14.32 67.78 0.97 -0.77 16 2 C -0.16 -1.56 9.52 25.65 0.24 -1.31 16 3 C -0.09 -0.85 5.64 29.85 0.17 -0.68 16 4 C 0.06 0.72 4.83 86.30 0.42 1.14 16 5 N -0.55 -7.01 4.74 -899.69 -4.27 -11.28 16 6 C 0.04 0.45 4.99 85.43 0.43 0.88 16 7 C -0.19 -1.96 5.63 30.52 0.17 -1.79 16 8 C 0.07 0.84 6.43 72.56 0.47 1.31 16 9 O -0.39 -6.77 9.38 -100.61 -0.94 -7.71 16 10 C 0.10 1.50 2.37 29.96 0.07 1.57 16 11 H 0.09 1.26 6.78 -2.39 -0.02 1.25 16 12 C 0.13 2.78 5.16 86.38 0.45 3.23 16 13 N -0.71 -17.24 5.46 -463.05 -2.53 -19.76 16 14 C 0.54 18.62 7.85 87.66 0.69 19.31 16 15 O -0.56 -24.13 15.86 -3.04 -0.05 -24.18 16 16 C -0.11 -4.22 6.16 71.24 0.44 -3.78 16 17 S -0.17 -8.89 18.55 -56.49 -1.05 -9.93 16 18 C -0.53 -31.07 10.04 67.95 0.68 -30.39 16 19 H 0.06 3.83 8.03 -2.91 -0.02 3.81 16 20 C 0.05 2.73 5.50 84.86 0.47 3.20 16 21 N -0.92 -56.03 13.97 21.65 0.30 -55.73 16 22 Si 0.91 45.22 27.74 68.60 1.90 47.12 16 23 H -0.26 -12.60 7.11 99.48 0.71 -11.89 16 24 H -0.26 -12.00 7.11 99.48 0.71 -11.29 16 25 H -0.24 -11.72 6.74 99.48 0.67 -11.05 16 26 C 0.04 0.56 4.62 85.57 0.40 0.95 16 27 H 0.10 0.75 8.06 -2.91 -0.02 0.73 16 28 H 0.10 0.78 7.84 -2.91 -0.02 0.76 16 29 H 0.11 0.97 8.06 -2.91 -0.02 0.95 16 30 H 0.07 0.65 5.88 -2.39 -0.01 0.64 16 31 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.08 0.87 8.04 -2.39 -0.02 0.85 16 33 H 0.03 0.39 7.58 -2.39 -0.02 0.37 16 34 H 0.09 0.77 5.81 -2.39 -0.01 0.76 16 35 H 0.07 0.81 6.54 -2.39 -0.02 0.80 16 36 H 0.06 0.79 6.69 -2.39 -0.02 0.78 16 37 H 0.09 0.71 8.14 -2.38 -0.02 0.69 16 38 H 0.10 1.13 8.14 -2.38 -0.02 1.11 16 39 H 0.05 0.54 7.72 -2.39 -0.02 0.52 16 40 H 0.09 1.84 8.14 -2.38 -0.02 1.82 16 41 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 42 H 0.42 7.96 8.36 -92.71 -0.77 7.19 16 43 H 0.11 3.96 8.14 -2.39 -0.02 3.94 16 44 H 0.11 3.95 8.14 -2.40 -0.02 3.93 16 45 H 0.28 15.63 8.31 -92.71 -0.77 14.86 16 46 H 0.09 1.28 7.74 -2.39 -0.02 1.26 16 47 H 0.05 0.73 7.12 -2.39 -0.02 0.71 16 Total: -1.00 -72.33 385.22 -0.43 -72.77 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: 0.14 Total: 15.84 kcal Atomic # 6 Polarization: -13.18 SS G_CDS: 6.05 Total: -7.13 kcal Atomic # 7 Polarization: -80.28 SS G_CDS: -6.49 Total: -86.77 kcal Atomic # 8 Polarization: -30.90 SS G_CDS: -0.99 Total: -31.90 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 1.90 Total: 47.12 kcal Atomic # 16 Polarization: -8.89 SS G_CDS: -1.05 Total: -9.93 kcal Total: -72.33 -0.43 -72.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001149207125.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.394 kcal (2) G-P(sol) polarization free energy of solvation -72.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds