Wall clock time and date at job start Tue Mar 31 2020 16:25:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47227 * 2 1 4 4 C 1.52999 * 109.47227 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.47086 * 180.02562 * 4 3 2 6 6 C 1.36820 * 119.99866 * 269.99997 * 5 4 3 7 7 H 1.07996 * 119.99923 * 144.29157 * 6 5 4 8 8 C 1.38859 * 119.99593 * 324.28800 * 6 5 4 9 9 N 1.31529 * 119.99745 * 153.87551 * 8 6 5 10 10 Si 1.86793 * 120.00383 * 333.87242 * 8 6 5 11 11 H 1.48509 * 109.47295 * 95.28350 * 10 8 6 12 12 H 1.48500 * 109.47581 * 215.28035 * 10 8 6 13 13 H 1.48494 * 109.47108 * 335.28395 * 10 8 6 14 14 C 1.38216 * 120.00540 * 89.99768 * 5 4 3 15 15 N 1.32065 * 120.12508 * 88.12077 * 14 5 4 16 16 C 1.32464 * 122.67224 * 180.02562 * 15 14 5 17 17 C 1.36256 * 121.97356 * 359.97438 * 16 15 14 18 18 C 1.40904 * 118.87295 * 0.02562 * 17 16 15 19 19 C 1.40045 * 122.01041 * 180.02562 * 18 17 16 20 20 C 1.38676 * 119.25383 * 179.97438 * 19 18 17 21 21 C 1.47776 * 119.75822 * 179.97438 * 20 19 18 22 22 O 1.21460 * 120.00109 * 0.02562 * 21 20 19 23 23 O 1.34712 * 119.99961 * 180.02562 * 21 20 19 24 24 C 1.45200 * 116.99667 * 180.02562 * 23 21 20 25 25 C 1.40539 * 120.48322 * 359.75657 * 20 19 18 26 26 C 1.36015 * 120.89994 * 0.50404 * 25 20 19 27 27 C 1.40160 * 119.91455 * 359.49955 * 26 25 20 28 28 H 1.09002 * 109.46909 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47121 * 299.99764 * 1 2 3 30 30 H 1.08991 * 109.46839 * 60.00181 * 1 2 3 31 31 H 1.09002 * 109.47502 * 239.99592 * 2 1 3 32 32 H 1.09007 * 109.47154 * 119.99708 * 2 1 3 33 33 H 1.08997 * 109.47343 * 59.99851 * 3 2 1 34 34 H 1.09002 * 109.47253 * 300.00089 * 3 2 1 35 35 H 1.08998 * 109.47121 * 60.00235 * 4 3 2 36 36 H 1.08998 * 109.47383 * 299.99509 * 4 3 2 37 37 H 0.97001 * 120.00145 * 180.02562 * 9 8 6 38 38 H 1.07992 * 119.01172 * 180.02562 * 16 15 14 39 39 H 1.07995 * 120.56434 * 180.02562 * 17 16 15 40 40 H 1.08001 * 120.37198 * 359.97438 * 19 18 17 41 41 H 1.09004 * 109.46701 * 179.97438 * 24 23 21 42 42 H 1.08991 * 109.47183 * 299.99795 * 24 23 21 43 43 H 1.09005 * 109.47258 * 60.00012 * 24 23 21 44 44 H 1.07995 * 119.55247 * 180.27511 * 25 20 19 45 45 H 1.08005 * 120.04133 * 179.77055 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0583 2.8237 0.0013 6 6 4.2869 3.4690 -1.1834 7 1 4.0814 4.5256 -1.2711 8 6 4.7830 2.7653 -2.2728 9 7 4.5358 3.1849 -3.4946 10 14 5.8014 1.2228 -2.0032 11 1 4.9231 0.0283 -2.0895 12 1 6.8563 1.1376 -3.0449 13 1 6.4343 1.2759 -0.6610 14 6 4.2882 3.4750 1.1985 15 7 5.4639 3.3762 1.7917 16 6 5.7388 3.9782 2.9392 17 6 4.8199 4.7462 3.5893 18 6 3.5398 4.9022 3.0216 19 6 2.5459 5.6766 3.6331 20 6 1.3056 5.7915 3.0236 21 6 0.2486 6.6054 3.6594 22 8 0.4679 7.1710 4.7116 23 8 -0.9582 6.7200 3.0719 24 6 -1.9479 7.5357 3.7526 25 6 1.0479 5.1434 1.8035 26 6 2.0019 4.3839 1.2009 27 6 3.2651 4.2491 1.7930 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.8934 -0.5139 -0.8899 32 1 1.8934 -0.5138 0.8901 33 1 1.6767 1.9563 0.8899 34 1 1.6767 1.9563 -0.8900 35 1 3.9337 0.9285 -0.8891 36 1 3.9330 0.9288 0.8909 37 1 4.8820 2.6932 -4.2557 38 1 6.7208 3.8574 3.3720 39 1 5.0686 5.2270 4.5237 40 1 2.7433 6.1786 4.5687 41 1 -2.8718 7.5441 3.1742 42 1 -2.1420 7.1215 4.7419 43 1 -1.5728 8.5543 3.8524 44 1 0.0781 5.2468 1.3399 45 1 1.7877 3.8890 0.2652 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167128380.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:25:59 Heat of formation + Delta-G solvation = -8.022761 kcal Electronic energy + Delta-G solvation = -28119.137682 eV Core-core repulsion = 24295.529495 eV Total energy + Delta-G solvation = -3823.608186 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.81881 -40.09030 -37.28830 -36.59667 -36.35375 -34.13236 -32.43030 -31.46741 -31.12346 -29.31881 -28.06169 -27.87757 -24.97758 -24.17967 -23.35349 -23.00488 -21.26965 -20.90981 -20.35926 -18.38678 -17.36625 -17.14641 -17.05392 -16.44830 -16.12164 -15.79869 -15.51911 -14.80926 -14.67264 -14.00780 -13.88096 -13.82051 -13.48993 -13.40836 -13.33397 -12.91154 -12.73184 -12.63806 -12.47565 -12.25608 -11.99896 -11.97814 -11.55675 -11.36990 -11.08620 -10.95194 -10.93396 -10.67938 -10.55121 -10.45649 -10.33157 -9.89389 -9.69595 -9.65530 -9.16004 -8.88300 -8.59507 -7.61812 -7.32381 -6.23590 -3.67717 0.39023 1.00477 2.08844 2.47098 2.57475 3.22405 3.40688 3.45919 3.55437 4.23139 4.40520 4.43779 4.63297 4.83275 4.92272 4.99460 4.99919 5.03139 5.19904 5.26629 5.30471 5.31734 5.35077 5.42125 5.50536 5.54797 5.70101 5.81598 5.94485 6.01356 6.11086 6.14647 6.15400 6.19221 6.23226 6.30087 6.35695 6.41218 6.45380 6.52019 6.66551 6.78733 6.86618 6.98138 7.02424 7.63520 7.77541 8.17977 8.62087 8.80985 9.44877 9.78103 10.88969 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.012132 B = 0.004156 C = 0.003620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2307.417039 B = 6735.408300 C = 7733.402759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.125 4.125 3 C -0.140 4.140 4 C 0.141 3.859 5 N -0.550 5.550 6 C -0.278 4.278 7 H 0.087 0.913 8 C 0.055 3.945 9 N -0.877 5.877 10 Si 0.866 3.134 11 H -0.281 1.281 12 H -0.297 1.297 13 H -0.256 1.256 14 C 0.453 3.547 15 N -0.510 5.510 16 C 0.102 3.898 17 C -0.191 4.191 18 C -0.028 4.028 19 C -0.050 4.050 20 C -0.108 4.108 21 C 0.512 3.488 22 O -0.511 6.511 23 O -0.352 6.352 24 C 0.037 3.963 25 C -0.109 4.109 26 C -0.057 4.057 27 C -0.091 4.091 28 H 0.046 0.954 29 H 0.050 0.950 30 H 0.055 0.945 31 H 0.059 0.941 32 H 0.054 0.946 33 H 0.058 0.942 34 H 0.075 0.925 35 H 0.065 0.935 36 H 0.043 0.957 37 H 0.269 0.731 38 H 0.144 0.856 39 H 0.131 0.869 40 H 0.140 0.860 41 H 0.102 0.898 42 H 0.062 0.938 43 H 0.063 0.937 44 H 0.135 0.865 45 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.687 1.581 12.397 15.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.163 4.163 3 C -0.179 4.179 4 C 0.017 3.983 5 N -0.269 5.269 6 C -0.405 4.405 7 H 0.104 0.896 8 C -0.149 4.149 9 N -0.514 5.514 10 Si 0.695 3.305 11 H -0.209 1.209 12 H -0.225 1.225 13 H -0.180 1.180 14 C 0.213 3.787 15 N -0.223 5.223 16 C -0.044 4.044 17 C -0.211 4.211 18 C -0.034 4.034 19 C -0.068 4.068 20 C -0.110 4.110 21 C 0.358 3.642 22 O -0.401 6.401 23 O -0.268 6.268 24 C -0.057 4.057 25 C -0.127 4.127 26 C -0.077 4.077 27 C -0.097 4.097 28 H 0.065 0.935 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.094 0.906 35 H 0.083 0.917 36 H 0.061 0.939 37 H 0.079 0.921 38 H 0.162 0.838 39 H 0.149 0.851 40 H 0.158 0.842 41 H 0.120 0.880 42 H 0.081 0.919 43 H 0.081 0.919 44 H 0.153 0.847 45 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -8.875 1.279 12.180 15.125 hybrid contribution 0.085 -0.081 0.538 0.550 sum -8.790 1.198 12.717 15.506 Atomic orbital electron populations 1.21743 0.96255 1.00810 1.01734 1.21497 0.95498 0.97831 1.01454 1.22245 0.97628 0.95576 1.02450 1.21344 0.92607 0.84182 1.00165 1.41467 1.73276 1.12576 0.99609 1.18639 1.41355 0.96304 0.84170 0.89588 1.25377 0.96469 0.98204 0.94871 1.69830 1.42832 1.40909 0.97867 0.87101 0.81224 0.83160 0.79052 1.20889 1.22465 1.17970 1.18860 0.85623 0.88226 0.86039 1.67852 1.23348 1.21696 1.09367 1.22083 0.98799 0.92568 0.90930 1.21715 0.93499 1.03725 1.02147 1.18004 0.94335 0.96846 0.94200 1.21273 0.90662 0.95828 0.99028 1.19042 0.92549 1.01834 0.97564 1.21350 0.81851 0.78524 0.82521 1.90807 1.81288 1.45287 1.22715 1.86578 1.22651 1.65736 1.51816 1.23275 0.89946 0.94494 0.98007 1.20976 1.00509 0.97208 0.94021 1.21271 0.90936 0.95613 0.99872 1.19638 0.96539 0.98790 0.94758 0.93454 0.93038 0.92635 0.92206 0.92723 0.92377 0.90641 0.91730 0.93879 0.92108 0.83847 0.85063 0.84220 0.87954 0.91905 0.91869 0.84678 0.82834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 9.91 37.16 0.37 -1.46 16 2 C -0.12 -1.82 5.93 -26.73 -0.16 -1.98 16 3 C -0.14 -2.40 4.20 -26.73 -0.11 -2.51 16 4 C 0.14 2.90 4.53 -4.04 -0.02 2.88 16 5 N -0.55 -12.51 1.40 -114.69 -0.16 -12.68 16 6 C -0.28 -7.29 9.86 -15.10 -0.15 -7.44 16 7 H 0.09 2.45 8.06 -52.49 -0.42 2.03 16 8 C 0.06 1.49 5.24 -17.45 -0.09 1.40 16 9 N -0.88 -24.93 13.96 55.49 0.77 -24.15 16 10 Si 0.87 21.20 25.24 -169.99 -4.29 16.90 16 11 H -0.28 -6.54 6.62 56.52 0.37 -6.17 16 12 H -0.30 -7.40 7.11 56.52 0.40 -7.00 16 13 H -0.26 -6.44 7.11 56.52 0.40 -6.04 16 14 C 0.45 9.62 6.06 -155.20 -0.94 8.68 16 15 N -0.51 -10.72 10.33 -12.45 -0.13 -10.85 16 16 C 0.10 1.69 11.06 -17.99 -0.20 1.50 16 17 C -0.19 -2.83 9.87 -39.29 -0.39 -3.22 16 18 C -0.03 -0.47 5.74 -106.84 -0.61 -1.08 16 19 C -0.05 -0.73 9.38 -38.74 -0.36 -1.09 16 20 C -0.11 -1.58 5.87 -104.97 -0.62 -2.20 16 21 C 0.51 7.25 7.89 34.63 0.27 7.53 16 22 O -0.51 -8.03 16.10 -19.23 -0.31 -8.34 16 23 O -0.35 -4.30 9.77 -40.52 -0.40 -4.69 16 24 C 0.04 0.31 10.56 101.05 1.07 1.38 16 25 C -0.11 -1.60 9.52 -39.51 -0.38 -1.98 16 26 C -0.06 -0.98 8.06 -39.66 -0.32 -1.30 16 27 C -0.09 -1.69 5.76 -106.60 -0.61 -2.31 16 28 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.06 0.95 6.34 -51.93 -0.33 0.62 16 34 H 0.07 1.40 8.00 -51.93 -0.42 0.98 16 35 H 0.06 1.44 3.32 -51.93 -0.17 1.27 16 36 H 0.04 0.85 8.04 -51.93 -0.42 0.43 16 37 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 38 H 0.14 1.92 8.06 -52.49 -0.42 1.49 16 39 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 40 H 0.14 1.83 7.62 -52.49 -0.40 1.43 16 41 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 44 H 0.14 1.72 7.56 -52.49 -0.40 1.32 16 45 H 0.15 2.74 5.76 -52.48 -0.30 2.44 16 LS Contribution 371.36 15.07 5.60 5.60 Total: -1.00 -30.53 371.36 -8.41 -38.94 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -6.25 Total: 2.47 kcal Atomic # 6 Polarization: 0.05 SS G_CDS: -3.25 Total: -3.20 kcal Atomic # 7 Polarization: -48.16 SS G_CDS: 0.49 Total: -47.67 kcal Atomic # 8 Polarization: -12.33 SS G_CDS: -0.71 Total: -13.04 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -4.29 Total: 16.90 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -30.53 -8.41 -38.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167128380.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.916 kcal (2) G-P(sol) polarization free energy of solvation -30.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds