Wall clock time and date at job start Tue Mar 31 2020 16:25:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47227 * 2 1 4 4 C 1.52999 * 109.47227 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.47086 * 180.02562 * 4 3 2 6 6 C 1.36820 * 119.99866 * 269.99997 * 5 4 3 7 7 H 1.07996 * 119.99923 * 144.29157 * 6 5 4 8 8 C 1.38859 * 119.99593 * 324.28800 * 6 5 4 9 9 N 1.31529 * 119.99745 * 153.87551 * 8 6 5 10 10 Si 1.86793 * 120.00383 * 333.87242 * 8 6 5 11 11 H 1.48509 * 109.47295 * 95.28350 * 10 8 6 12 12 H 1.48500 * 109.47581 * 215.28035 * 10 8 6 13 13 H 1.48494 * 109.47108 * 335.28395 * 10 8 6 14 14 C 1.38216 * 120.00540 * 89.99768 * 5 4 3 15 15 N 1.32065 * 120.12508 * 88.12077 * 14 5 4 16 16 C 1.32464 * 122.67224 * 180.02562 * 15 14 5 17 17 C 1.36256 * 121.97356 * 359.97438 * 16 15 14 18 18 C 1.40904 * 118.87295 * 0.02562 * 17 16 15 19 19 C 1.40045 * 122.01041 * 180.02562 * 18 17 16 20 20 C 1.38676 * 119.25383 * 179.97438 * 19 18 17 21 21 C 1.47776 * 119.75822 * 179.97438 * 20 19 18 22 22 O 1.21460 * 120.00109 * 0.02562 * 21 20 19 23 23 O 1.34712 * 119.99961 * 180.02562 * 21 20 19 24 24 C 1.45200 * 116.99667 * 180.02562 * 23 21 20 25 25 C 1.40539 * 120.48322 * 359.75657 * 20 19 18 26 26 C 1.36015 * 120.89994 * 0.50404 * 25 20 19 27 27 C 1.40160 * 119.91455 * 359.49955 * 26 25 20 28 28 H 1.09002 * 109.46909 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47121 * 299.99764 * 1 2 3 30 30 H 1.08991 * 109.46839 * 60.00181 * 1 2 3 31 31 H 1.09002 * 109.47502 * 239.99592 * 2 1 3 32 32 H 1.09007 * 109.47154 * 119.99708 * 2 1 3 33 33 H 1.08997 * 109.47343 * 59.99851 * 3 2 1 34 34 H 1.09002 * 109.47253 * 300.00089 * 3 2 1 35 35 H 1.08998 * 109.47121 * 60.00235 * 4 3 2 36 36 H 1.08998 * 109.47383 * 299.99509 * 4 3 2 37 37 H 0.97001 * 120.00145 * 180.02562 * 9 8 6 38 38 H 1.07992 * 119.01172 * 180.02562 * 16 15 14 39 39 H 1.07995 * 120.56434 * 180.02562 * 17 16 15 40 40 H 1.08001 * 120.37198 * 359.97438 * 19 18 17 41 41 H 1.09004 * 109.46701 * 179.97438 * 24 23 21 42 42 H 1.08991 * 109.47183 * 299.99795 * 24 23 21 43 43 H 1.09005 * 109.47258 * 60.00012 * 24 23 21 44 44 H 1.07995 * 119.55247 * 180.27511 * 25 20 19 45 45 H 1.08005 * 120.04133 * 179.77055 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0583 2.8237 0.0013 6 6 4.2869 3.4690 -1.1834 7 1 4.0814 4.5256 -1.2711 8 6 4.7830 2.7653 -2.2728 9 7 4.5358 3.1849 -3.4946 10 14 5.8014 1.2228 -2.0032 11 1 4.9231 0.0283 -2.0895 12 1 6.8563 1.1376 -3.0449 13 1 6.4343 1.2759 -0.6610 14 6 4.2882 3.4750 1.1985 15 7 5.4639 3.3762 1.7917 16 6 5.7388 3.9782 2.9392 17 6 4.8199 4.7462 3.5893 18 6 3.5398 4.9022 3.0216 19 6 2.5459 5.6766 3.6331 20 6 1.3056 5.7915 3.0236 21 6 0.2486 6.6054 3.6594 22 8 0.4679 7.1710 4.7116 23 8 -0.9582 6.7200 3.0719 24 6 -1.9479 7.5357 3.7526 25 6 1.0479 5.1434 1.8035 26 6 2.0019 4.3839 1.2009 27 6 3.2651 4.2491 1.7930 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.8934 -0.5139 -0.8899 32 1 1.8934 -0.5138 0.8901 33 1 1.6767 1.9563 0.8899 34 1 1.6767 1.9563 -0.8900 35 1 3.9337 0.9285 -0.8891 36 1 3.9330 0.9288 0.8909 37 1 4.8820 2.6932 -4.2557 38 1 6.7208 3.8574 3.3720 39 1 5.0686 5.2270 4.5237 40 1 2.7433 6.1786 4.5687 41 1 -2.8718 7.5441 3.1742 42 1 -2.1420 7.1215 4.7419 43 1 -1.5728 8.5543 3.8524 44 1 0.0781 5.2468 1.3399 45 1 1.7877 3.8890 0.2652 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167128380.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:25:58 Heat of formation + Delta-G solvation = -23.379236 kcal Electronic energy + Delta-G solvation = -28119.803588 eV Core-core repulsion = 24295.529495 eV Total energy + Delta-G solvation = -3824.274093 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.05395 -41.27002 -38.69803 -37.96966 -37.46709 -35.48320 -34.18464 -32.93654 -32.47819 -30.62351 -29.44989 -28.78681 -26.53147 -25.58352 -24.65615 -24.38681 -22.45171 -22.19919 -21.78731 -19.66870 -18.85479 -18.64220 -18.20018 -17.73651 -17.41508 -17.14391 -16.96778 -16.31451 -16.02810 -15.33151 -15.13750 -14.97705 -14.74546 -14.62833 -14.59404 -14.48994 -14.25678 -14.01266 -13.71997 -13.48473 -13.29416 -12.98075 -12.95547 -12.91023 -12.76598 -12.23735 -12.08993 -11.89478 -11.82446 -11.81808 -11.73218 -11.62715 -11.32145 -11.03867 -10.79088 -10.36735 -10.19182 -9.11813 -8.90412 -8.30618 -5.72048 -0.86320 -0.28522 0.80385 1.25509 1.26791 1.39317 1.55554 1.61649 2.20585 2.35622 2.72401 3.00799 3.09959 3.57574 3.61118 3.80285 3.91192 3.96757 4.06456 4.08874 4.19323 4.22359 4.31988 4.36077 4.36601 4.41791 4.46376 4.65074 4.69409 4.75352 4.78938 4.87567 4.95735 5.00436 5.02320 5.08100 5.15237 5.19351 5.21410 5.35858 5.40468 5.44698 5.53359 5.64583 5.72819 5.82164 6.12736 6.58732 6.85167 7.25862 7.51547 7.88965 8.86987 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.012132 B = 0.004156 C = 0.003620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2307.417039 B = 6735.408300 C = 7733.402759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.123 4.123 3 C -0.126 4.126 4 C 0.138 3.862 5 N -0.558 5.558 6 C -0.263 4.263 7 H 0.049 0.951 8 C 0.011 3.989 9 N -0.923 5.923 10 Si 0.922 3.078 11 H -0.264 1.264 12 H -0.304 1.304 13 H -0.268 1.268 14 C 0.416 3.584 15 N -0.541 5.541 16 C 0.078 3.922 17 C -0.156 4.156 18 C -0.044 4.044 19 C -0.033 4.033 20 C -0.114 4.114 21 C 0.518 3.482 22 O -0.528 6.528 23 O -0.355 6.355 24 C 0.028 3.972 25 C -0.087 4.087 26 C -0.079 4.079 27 C -0.101 4.101 28 H 0.065 0.935 29 H 0.059 0.941 30 H 0.050 0.950 31 H 0.051 0.949 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.054 0.946 35 H 0.044 0.956 36 H 0.049 0.951 37 H 0.268 0.732 38 H 0.176 0.824 39 H 0.178 0.822 40 H 0.165 0.835 41 H 0.133 0.867 42 H 0.067 0.933 43 H 0.064 0.936 44 H 0.155 0.845 45 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.076 1.883 15.689 19.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.161 4.161 3 C -0.165 4.165 4 C 0.015 3.985 5 N -0.278 5.278 6 C -0.391 4.391 7 H 0.067 0.933 8 C -0.189 4.189 9 N -0.564 5.564 10 Si 0.750 3.250 11 H -0.191 1.191 12 H -0.232 1.232 13 H -0.193 1.193 14 C 0.176 3.824 15 N -0.254 5.254 16 C -0.067 4.067 17 C -0.175 4.175 18 C -0.049 4.049 19 C -0.051 4.051 20 C -0.116 4.116 21 C 0.364 3.636 22 O -0.419 6.419 23 O -0.271 6.271 24 C -0.065 4.065 25 C -0.106 4.106 26 C -0.099 4.099 27 C -0.107 4.107 28 H 0.085 0.915 29 H 0.078 0.922 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.073 0.927 35 H 0.062 0.938 36 H 0.068 0.932 37 H 0.078 0.922 38 H 0.193 0.807 39 H 0.195 0.805 40 H 0.182 0.818 41 H 0.152 0.848 42 H 0.086 0.914 43 H 0.083 0.917 44 H 0.173 0.827 45 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -10.288 1.568 15.509 18.677 hybrid contribution 0.389 0.016 -0.205 0.440 sum -9.899 1.584 15.305 18.295 Atomic orbital electron populations 1.21701 0.94249 1.02148 1.01961 1.21495 0.97250 0.95672 1.01676 1.22076 0.95208 0.97458 1.01793 1.21372 0.94689 0.83119 0.99316 1.41334 1.74081 1.12949 0.99424 1.18333 1.39922 0.94773 0.86108 0.93296 1.25784 0.97725 1.00775 0.94609 1.69922 1.45101 1.42898 0.98520 0.86217 0.79793 0.81395 0.77604 1.19078 1.23192 1.19261 1.18904 0.86911 0.89712 0.86854 1.67649 1.23291 1.23064 1.11354 1.22580 1.00827 0.93298 0.89966 1.22209 0.91869 1.00833 1.02583 1.18257 0.95699 0.97272 0.93697 1.21506 0.89941 0.94394 0.99273 1.19196 0.93148 1.01838 0.97430 1.21134 0.82309 0.78048 0.82125 1.90803 1.81716 1.45991 1.23361 1.86562 1.22361 1.66132 1.52064 1.23636 0.90019 0.94007 0.98789 1.21132 1.00563 0.95222 0.93633 1.21123 0.91434 0.97402 0.99894 1.19646 0.96362 0.98925 0.95793 0.91549 0.92197 0.93058 0.92986 0.91505 0.91515 0.92747 0.93757 0.93248 0.92226 0.80707 0.80451 0.81796 0.84843 0.91430 0.91678 0.82700 0.84585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.32 9.91 71.98 0.71 -2.60 16 2 C -0.12 -3.49 5.93 30.59 0.18 -3.31 16 3 C -0.13 -4.42 4.20 30.59 0.13 -4.29 16 4 C 0.14 5.85 4.53 86.38 0.39 6.24 16 5 N -0.56 -26.41 1.40 -516.75 -0.72 -27.13 16 6 C -0.26 -14.61 9.86 84.06 0.83 -13.78 16 7 H 0.05 3.02 8.06 -2.91 -0.02 2.99 16 8 C 0.01 0.62 5.24 84.89 0.45 1.07 16 9 N -0.92 -55.26 13.96 21.65 0.30 -54.95 16 10 Si 0.92 45.80 25.24 68.60 1.73 47.53 16 11 H -0.26 -12.19 6.62 99.48 0.66 -11.53 16 12 H -0.30 -15.22 7.11 99.48 0.71 -14.51 16 13 H -0.27 -13.68 7.11 99.48 0.71 -12.97 16 14 C 0.42 18.04 6.06 133.99 0.81 18.85 16 15 N -0.54 -22.74 10.33 -193.30 -2.00 -24.74 16 16 C 0.08 2.44 11.06 84.14 0.93 3.37 16 17 C -0.16 -4.07 9.87 22.46 0.22 -3.85 16 18 C -0.04 -1.33 5.74 -21.30 -0.12 -1.45 16 19 C -0.03 -0.86 9.38 22.81 0.21 -0.65 16 20 C -0.11 -3.05 5.87 -20.09 -0.12 -3.17 16 21 C 0.52 13.18 7.89 70.34 0.56 13.74 16 22 O -0.53 -14.98 16.10 19.96 0.32 -14.66 16 23 O -0.36 -7.65 9.77 -56.21 -0.55 -8.20 16 24 C 0.03 0.40 10.56 113.37 1.20 1.59 16 25 C -0.09 -2.45 9.52 22.31 0.21 -2.23 16 26 C -0.08 -2.70 8.06 22.22 0.18 -2.52 16 27 C -0.10 -3.75 5.76 -21.15 -0.12 -3.88 16 28 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.07 1.74 8.14 -2.38 -0.02 1.72 16 33 H 0.07 2.20 6.34 -2.39 -0.02 2.18 16 34 H 0.05 2.11 8.00 -2.39 -0.02 2.09 16 35 H 0.04 2.03 3.32 -2.39 -0.01 2.02 16 36 H 0.05 1.97 8.04 -2.39 -0.02 1.95 16 37 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 38 H 0.18 4.17 8.06 -2.91 -0.02 4.15 16 39 H 0.18 2.99 8.06 -2.91 -0.02 2.97 16 40 H 0.16 3.52 7.62 -2.91 -0.02 3.50 16 41 H 0.13 1.02 8.14 -2.38 -0.02 1.00 16 42 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 43 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 44 H 0.16 3.65 7.56 -2.91 -0.02 3.62 16 45 H 0.14 5.10 5.76 -2.91 -0.02 5.08 16 Total: -1.00 -69.97 371.36 6.69 -63.28 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: 0.95 Total: 15.75 kcal Atomic # 6 Polarization: -3.53 SS G_CDS: 6.65 Total: 3.12 kcal Atomic # 7 Polarization: -104.41 SS G_CDS: -2.42 Total: -106.83 kcal Atomic # 8 Polarization: -22.63 SS G_CDS: -0.23 Total: -22.86 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 1.73 Total: 47.53 kcal Total: -69.97 6.69 -63.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167128380.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.903 kcal (2) G-P(sol) polarization free energy of solvation -69.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds