Wall clock time and date at job start Tue Mar 31 2020 16:26:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47389 * 2 1 4 4 C 1.52993 * 109.47248 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.47061 * 180.02562 * 4 3 2 6 6 C 1.36828 * 119.99916 * 89.99992 * 5 4 3 7 7 H 1.07991 * 120.00225 * 313.74052 * 6 5 4 8 8 C 1.38916 * 119.99783 * 133.47017 * 6 5 4 9 9 N 1.31491 * 119.99852 * 164.30135 * 8 6 5 10 10 Si 1.86799 * 119.99891 * 344.29906 * 8 6 5 11 11 H 1.48497 * 109.47057 * 95.65332 * 10 8 6 12 12 H 1.48507 * 109.46775 * 215.65213 * 10 8 6 13 13 H 1.48499 * 109.47460 * 335.64902 * 10 8 6 14 14 C 1.38398 * 120.00066 * 269.99928 * 5 4 3 15 15 C 1.40316 * 119.22721 * 167.29916 * 14 5 4 16 16 C 1.36174 * 119.83853 * 179.97438 * 15 14 5 17 17 C 1.41192 * 118.29956 * 359.97438 * 16 15 14 18 18 C 1.39956 * 121.09476 * 179.97438 * 17 16 15 19 19 C 1.38793 * 119.43274 * 180.02562 * 18 17 16 20 20 C 1.47527 * 119.81573 * 179.97438 * 19 18 17 21 21 O 1.21493 * 120.00428 * 0.03518 * 20 19 18 22 22 O 1.34755 * 119.99932 * 180.02562 * 20 19 18 23 23 C 1.45200 * 117.00167 * 179.97438 * 22 20 19 24 24 C 1.40668 * 120.36322 * 0.02562 * 19 18 17 25 25 C 1.35694 * 120.87506 * 359.97438 * 24 19 18 26 26 C 1.40810 * 120.12833 * 0.02562 * 25 24 19 27 27 N 1.31902 * 119.22203 * 347.01944 * 14 5 4 28 28 H 1.09001 * 109.47094 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.47681 * 300.00117 * 1 2 3 30 30 H 1.09011 * 109.46815 * 60.00651 * 1 2 3 31 31 H 1.09000 * 109.47501 * 239.99561 * 2 1 3 32 32 H 1.09004 * 109.47074 * 119.99964 * 2 1 3 33 33 H 1.09006 * 109.46785 * 59.99522 * 3 2 1 34 34 H 1.08997 * 109.46694 * 299.99395 * 3 2 1 35 35 H 1.09000 * 109.47287 * 59.99779 * 4 3 2 36 36 H 1.09004 * 109.47429 * 300.00095 * 4 3 2 37 37 H 0.96999 * 120.00238 * 179.97438 * 9 8 6 38 38 H 1.08001 * 120.07840 * 359.94917 * 15 14 5 39 39 H 1.08001 * 120.85555 * 179.97438 * 16 15 14 40 40 H 1.08002 * 120.28511 * 0.02562 * 18 17 16 41 41 H 1.09002 * 109.47148 * 299.99830 * 23 22 20 42 42 H 1.08998 * 109.46995 * 59.99768 * 23 22 20 43 43 H 1.08997 * 109.47113 * 179.97438 * 23 22 20 44 44 H 1.07997 * 119.56390 * 179.97438 * 24 19 18 45 45 H 1.07998 * 119.93731 * 179.97438 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0583 2.8236 0.0013 6 6 4.2859 3.4683 1.1865 7 1 3.5518 3.4199 1.9771 8 6 5.4637 4.1804 1.3749 9 7 5.5597 5.0426 2.3630 10 14 6.9109 3.9129 0.2245 11 1 6.8911 4.9441 -0.8439 12 1 8.1785 4.0185 0.9910 13 1 6.8138 2.5636 -0.3879 14 6 4.2895 3.4764 -1.1970 15 6 4.4947 4.8645 -1.1925 16 6 4.7238 5.5193 -2.3643 17 6 4.7473 4.7662 -3.5584 18 6 4.9770 5.3795 -4.7953 19 6 4.9922 4.6061 -5.9477 20 6 5.2330 5.2438 -7.2560 21 8 5.4179 6.4427 -7.3226 22 8 5.2481 4.4965 -8.3773 23 6 5.4904 5.1910 -9.6292 24 6 4.7783 3.2177 -5.8751 25 6 4.5543 2.6090 -4.6832 26 6 4.5327 3.3660 -3.4960 27 7 4.3173 2.7782 -2.3157 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6768 1.9562 -0.8900 35 1 3.9337 0.9285 -0.8891 36 1 3.9330 0.9287 0.8909 37 1 6.3822 5.5396 2.4948 38 1 4.4707 5.4122 -0.2620 39 1 4.8834 6.5873 -2.3800 40 1 5.1410 6.4454 -4.8527 41 1 4.7131 5.9389 -9.7861 42 1 6.4634 5.6808 -9.5905 43 1 5.4770 4.4746 -10.4506 44 1 4.7925 2.6283 -6.7799 45 1 4.3914 1.5421 -4.6450 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167129373.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:26:13 Heat of formation + Delta-G solvation = -28.093155 kcal Electronic energy + Delta-G solvation = -27584.333056 eV Core-core repulsion = 23759.854552 eV Total energy + Delta-G solvation = -3824.478504 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.47971 -39.85696 -37.83763 -36.29820 -35.52872 -34.31278 -32.97194 -32.26714 -30.07290 -29.57357 -28.53101 -27.50897 -25.19250 -24.16607 -22.95923 -22.26995 -21.28881 -20.84427 -20.51257 -18.73215 -17.86974 -17.10312 -16.73735 -16.21366 -15.81972 -15.57731 -15.16679 -15.03646 -14.32570 -14.03148 -13.76583 -13.73831 -13.62518 -13.27982 -13.21582 -13.06134 -12.81808 -12.66404 -12.34130 -12.20448 -12.07680 -11.82466 -11.68502 -11.23711 -11.04896 -10.91649 -10.81578 -10.77799 -10.75761 -10.72426 -10.31346 -10.26970 -10.12695 -9.82145 -9.33153 -8.80311 -8.56456 -7.85680 -7.02006 -6.79380 -4.37658 0.81065 1.36434 2.44458 2.76527 2.85754 3.03443 3.13642 3.21226 3.64893 3.89844 4.02338 4.53466 4.86964 4.97731 5.03155 5.06426 5.11760 5.16348 5.22150 5.25025 5.38601 5.40647 5.48702 5.53409 5.61709 5.69599 5.82851 5.96984 5.99107 6.03843 6.07308 6.13952 6.27315 6.28194 6.37222 6.38899 6.43614 6.55858 6.61474 6.68069 6.75106 6.78045 6.94821 7.05566 7.23044 7.40058 7.70092 7.95216 8.24519 8.59214 8.76817 9.25767 10.23250 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.011951 B = 0.003821 C = 0.003088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2342.360958 B = 7325.729430 C = 9066.294791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.120 4.120 3 C -0.127 4.127 4 C 0.111 3.889 5 N -0.417 5.417 6 C -0.325 4.325 7 H 0.112 0.888 8 C 0.076 3.924 9 N -0.843 5.843 10 Si 0.859 3.141 11 H -0.253 1.253 12 H -0.282 1.282 13 H -0.257 1.257 14 C 0.394 3.606 15 C -0.187 4.187 16 C -0.047 4.047 17 C -0.195 4.195 18 C 0.019 3.981 19 C -0.203 4.203 20 C 0.516 3.484 21 O -0.526 6.526 22 O -0.358 6.358 23 C 0.038 3.962 24 C -0.044 4.044 25 C -0.147 4.147 26 C 0.236 3.764 27 N -0.592 5.592 28 H 0.049 0.951 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.062 0.938 34 H 0.060 0.940 35 H 0.080 0.920 36 H 0.071 0.929 37 H 0.283 0.717 38 H 0.150 0.850 39 H 0.129 0.871 40 H 0.130 0.870 41 H 0.060 0.940 42 H 0.060 0.940 43 H 0.098 0.902 44 H 0.128 0.872 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.025 -4.206 -11.791 12.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.158 4.158 3 C -0.166 4.166 4 C -0.012 4.012 5 N -0.107 5.107 6 C -0.454 4.454 7 H 0.129 0.871 8 C -0.136 4.136 9 N -0.474 5.474 10 Si 0.683 3.317 11 H -0.177 1.177 12 H -0.208 1.208 13 H -0.181 1.181 14 C 0.147 3.853 15 C -0.209 4.209 16 C -0.072 4.072 17 C -0.201 4.201 18 C 0.000 4.000 19 C -0.206 4.206 20 C 0.363 3.637 21 O -0.417 6.417 22 O -0.275 6.275 23 C -0.056 4.056 24 C -0.064 4.064 25 C -0.167 4.167 26 C 0.105 3.895 27 N -0.317 5.317 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.098 0.902 36 H 0.090 0.910 37 H 0.094 0.906 38 H 0.167 0.833 39 H 0.147 0.853 40 H 0.148 0.852 41 H 0.079 0.921 42 H 0.078 0.922 43 H 0.116 0.884 44 H 0.146 0.854 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -3.037 -4.707 -11.310 12.621 hybrid contribution 1.090 1.096 -0.512 1.628 sum -1.947 -3.611 -11.822 12.514 Atomic orbital electron populations 1.21751 0.96250 1.00979 1.01720 1.21441 0.95477 0.97106 1.01776 1.21899 0.96219 0.96208 1.02272 1.21673 0.93397 0.83731 1.02431 1.42734 1.55841 1.10228 1.01888 1.19167 1.04164 1.30756 0.91300 0.87101 1.25661 0.97794 0.94305 0.95816 1.69733 1.28363 1.20098 1.29212 0.87073 0.81859 0.81577 0.81182 1.17712 1.20793 1.18111 1.18882 0.91785 0.88034 0.86587 1.21626 1.04672 0.94494 1.00134 1.21099 0.95693 0.99285 0.91090 1.18416 1.12977 0.95018 0.93694 1.21209 0.89702 0.99079 0.90004 1.18530 1.18312 0.94506 0.89293 1.21300 0.72687 0.84976 0.84692 1.90786 1.47470 1.15989 1.87447 1.86562 1.83120 1.41898 1.15953 1.23188 1.01659 0.98030 0.82768 1.20713 0.95106 0.92762 0.97821 1.20406 1.06298 0.99893 0.90123 1.18667 0.89853 0.89250 0.91704 1.67619 1.30207 1.37280 0.96613 0.93188 0.92896 0.92924 0.92057 0.92173 0.91895 0.92091 0.90173 0.91015 0.90649 0.83266 0.85312 0.85220 0.92127 0.92152 0.88373 0.85413 0.85320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 9.91 37.16 0.37 -1.35 16 2 C -0.12 -1.55 5.93 -26.73 -0.16 -1.71 16 3 C -0.13 -2.06 5.54 -26.73 -0.15 -2.20 16 4 C 0.11 2.06 5.49 -4.05 -0.02 2.04 16 5 N -0.42 -9.19 2.17 -115.00 -0.25 -9.44 16 6 C -0.33 -7.80 9.15 -15.07 -0.14 -7.94 16 7 H 0.11 2.78 8.06 -52.49 -0.42 2.36 16 8 C 0.08 1.86 3.93 -17.45 -0.07 1.79 16 9 N -0.84 -21.49 13.96 55.50 0.77 -20.71 16 10 Si 0.86 19.96 24.59 -169.99 -4.18 15.79 16 11 H -0.25 -5.81 6.03 56.52 0.34 -5.47 16 12 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 13 H -0.26 -6.30 7.11 56.52 0.40 -5.89 16 14 C 0.39 8.76 5.25 -155.58 -0.82 7.94 16 15 C -0.19 -4.03 5.93 -39.54 -0.23 -4.26 16 16 C -0.05 -0.92 9.54 -39.20 -0.37 -1.29 16 17 C -0.20 -3.76 5.74 -106.77 -0.61 -4.37 16 18 C 0.02 0.34 9.34 -38.73 -0.36 -0.02 16 19 C -0.20 -3.34 5.87 -104.99 -0.62 -3.96 16 20 C 0.52 8.23 7.89 34.52 0.27 8.50 16 21 O -0.53 -9.40 16.10 -19.26 -0.31 -9.71 16 22 O -0.36 -4.82 9.78 -40.64 -0.40 -5.21 16 23 C 0.04 0.36 10.57 101.05 1.07 1.43 16 24 C -0.04 -0.67 9.51 -39.58 -0.38 -1.04 16 25 C -0.15 -2.47 9.94 -39.52 -0.39 -2.86 16 26 C 0.24 4.71 6.61 -84.76 -0.56 4.15 16 27 N -0.59 -12.69 8.99 -10.15 -0.09 -12.78 16 28 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.05 0.61 8.14 -51.92 -0.42 0.18 16 31 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.08 1.50 7.20 -51.93 -0.37 1.13 16 36 H 0.07 1.28 8.04 -51.93 -0.42 0.86 16 37 H 0.28 6.78 8.31 -40.82 -0.34 6.44 16 38 H 0.15 3.39 5.82 -52.49 -0.31 3.08 16 39 H 0.13 2.10 8.06 -52.49 -0.42 1.68 16 40 H 0.13 2.09 7.62 -52.49 -0.40 1.69 16 41 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 43 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.13 1.61 7.57 -52.49 -0.40 1.22 16 45 H 0.13 1.95 8.06 -52.49 -0.42 1.53 16 LS Contribution 372.09 15.07 5.61 5.61 Total: -1.00 -27.61 372.09 -8.60 -36.22 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: -6.58 Total: 5.42 kcal Atomic # 6 Polarization: -2.00 SS G_CDS: -3.17 Total: -5.18 kcal Atomic # 7 Polarization: -43.36 SS G_CDS: 0.43 Total: -42.93 kcal Atomic # 8 Polarization: -14.21 SS G_CDS: -0.71 Total: -14.92 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -4.18 Total: 15.79 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -27.61 -8.60 -36.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167129373.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.123 kcal (2) G-P(sol) polarization free energy of solvation -27.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds